Basic Information

Insect: Drosophila formosana
Gene Symbol: -
Assembly: GCA_035045625.1
Location: JAWNOW010000502.1:2405639-2409612[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00044 0.029 14.8 0.1 1 23 176 199 176 199 0.96

2 14 0.0018 0.11 12.9 3.1 2 23 248 270 244 270 0.89

3 14 0.14 8.8 7.0 1.3 1 23 361 384 361 384 0.93

4 14 0.44 28 5.4 5.6 2 23 433 455 432 456 0.95

5 14 0.0035 0.23 12.0 0.5 1 23 517 540 517 540 0.88

6 14 2.2 1.4e+02 3.2 0.1 2 14 559 571 558 583 0.85

7 14 0.00074 0.048 14.1 3.3 2 23 591 613 591 613 0.96

8 14 0.00099 0.064 13.7 0.1 1 23 711 734 711 734 0.95

9 14 0.00012 0.0075 16.6 0.2 1 23 802 825 802 825 0.92

10 14 0.0012 0.081 13.4 2.2 2 23 875 897 874 897 0.97

11 14 0.002 0.13 12.7 2.0 1 23 990 1013 990 1013 0.92

12 14 0.057 3.7 8.2 1.5 1 21 1065 1085 1065 1086 0.95

13 14 0.38 24 5.6 0.2 2 23 1138 1162 1137 1162 0.88

14 14 1.8 1.1e+02 3.5 0.6 1 16 1180 1194 1180 1204 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00044	0.029	14.8	0.1	1	23	176	199	176	199	0.96
2	14	0.0018	0.11	12.9	3.1	2	23	248	270	244	270	0.89
3	14	0.14	8.8	7.0	1.3	1	23	361	384	361	384	0.93
4	14	0.44	28	5.4	5.6	2	23	433	455	432	456	0.95
5	14	0.0035	0.23	12.0	0.5	1	23	517	540	517	540	0.88
6	14	2.2	1.4e+02	3.2	0.1	2	14	559	571	558	583	0.85
7	14	0.00074	0.048	14.1	3.3	2	23	591	613	591	613	0.96
8	14	0.00099	0.064	13.7	0.1	1	23	711	734	711	734	0.95
9	14	0.00012	0.0075	16.6	0.2	1	23	802	825	802	825	0.92
10	14	0.0012	0.081	13.4	2.2	2	23	875	897	874	897	0.97
11	14	0.002	0.13	12.7	2.0	1	23	990	1013	990	1013	0.92
12	14	0.057	3.7	8.2	1.5	1	21	1065	1085	1065	1086	0.95
13	14	0.38	24	5.6	0.2	2	23	1138	1162	1137	1162	0.88
14	14	1.8	1.1e+02	3.5	0.6	1	16	1180	1194	1180	1204	0.75

Sequence Information

Coding Sequence: ATGGAAGGTATGGATCTGTGGACGTCGATGTTTTCGGCCGACTTTGAGGAAGGCGACGACGGTGTGGctgataattataataatgacAGCAACGTACACGTAGAGGACATTATGGGAGATGAagaggaggacgaggaggaggatgaggagcaGGAGCGGGATGTCGATGAGATTGaggaggagggggaggggcaggGTGACGACAGTAGACGACGGCGAAAGGAGAAAGCGCACGAGCCCGATGATGATGCCATATTTGATTTCGAACTGGAGCCCATCGTTAGCATTGCTGAACCAGAATTGGAGCCAGCGCGCAGAGGAACTGTCGCCTTGGCGCCACCAATGCCAACTGGTCCTCCGGTGCGTGCCATGCACCGTCAGTCGCTGCCGGCGTCGTTTGGCTCATCGTTGATGCCACGAGGAGGCTCTGTGGTGGGGGCAACCCCAGCAACGCGTCCAACAACATCGCAGATCAATGCCACCGATGAAAATGGCGTTCCCATAAACTATGAATTGggtgttatttatatttgtccCGCATGCGGCGCGGAGTATCGACAGCAGGACATGTGGAAGCGTCATATGAACCAGATGCATCAGTACAACACACGCAAGGGGCTCAATTTTGTGGCCATCGATAAGCTGTATCATCGGTGTCTGGAGTGTAACAAGCGTATTGCGATGCACAGTCGAGAGAATCTATTGAAGCATAAGTTCACCCATCTGCCATATCGGTGCACCAAGTGCTTCATATGCAAGCGAGAGTACAAATACAGGCAGGATCTGATGGTGCATCTCCGTATGGTGCACTGTGACGAGGTGGTGGCCATGATGCGTGACGGCGATACCAGTGCCGGCCGAAAGACGCGAGTGCGTGAGCCACGCACAGAGCAGAACTTGTGTCAACCAAGTGCTCCAATCCTCGGAGATGACGATAGCAGGCAACTGAAGCATGAACATGTGGAGACGGATGCTGCTGGGGATGAGGACGACAAGCGAAAGCGCAGCCATCCAGCTGCAGCAGGTAACGGGAGCAGCGGTGTGGGCAGCGCAGCAGAAATCTGCGAGGATTACATTCACTACATGTGTCCGGACTGCAGCACTGATTGCGACACTCATGCGCAGTGGAGTCAGCACATTGAATTCGTGCACGATTATGTCAGCAGACGAGGCCTCAATTTTCGCTGCGTGGACATGCAGATGCAGTGCCTCGAGTGCAAACAGTTCGTCATTCCAAACACGATCAAGACTTTGCGAGCCCACAAGTTCAGCCACTTGCCGCAGCCCAATTGGATGCGCTGCAAATTGTGCTATAAGGGCTACACGGAGCATCACGAGCTGGTTACACATCTGCTTAAGCAGCATCACTTAGAGACATTAATGCCCGACTCCGAGGAGACGGAGGAACCCATTTACATTGCCAGTGGCGGCGAAGATGTTGAAGATAAAACTGACAATGGCTGTGACGAGGAATCGACACATTGGGACGAAGCACCGCGACGCGGCGGACGCATTAGCAGCGATGACATGTACGAGCCACACATTGACTATCTCTGTCCACAGTGCGGTAGAGAGTTCATCGAGAAGAAACACTGGCGCACGCATGTCGTACAGGTTCACGGCATGAACGATCTGGGCAAGTTGAACTTTGAGGTCATCAACGACAGGCAGCTGAAGTGCACGGAATGCGATAAGATCATCACAAACGCCTATGGCATACAGAATGCCCAACAGCATCGCATTACGCATTTGCCATACAAGGCATACGCTCGATGTCGCAAGTGCCACAAATCATACACGGATCGCAAGGGTTTGGTTAAGCATTTGGCCACTTATCATCGTGTGGGCTACGAGCCGCGtaaggctgctgctgttggagcAGCTCCGAGTGCTGCTACCAGTCAGTCTGCTAAGACACAAACGCCGCGCAAGCAAATTGTAACTGTAGCAAATGAAACGTATGagattatttatttggatGAGGAACAATCCTCTCCCGGTAATAATAACATTAACGAGGAAAATGATTTTGGAGAGCAGATGCAAGCAGATGACGATGAATATGCCATCAGCAGCAGTCGGCAGTTGCCGCCAGCTGCCACGACCAATCAGAACCACAATCCCAATCGGTACAAATGCGTTGACTGCGGCTCCCTGTTTCCAACGCAGGCGGCTCTCAAGACTCATATTAGTGAAGAGCATGATTTCATGGATACTCTATATAGTGCCAAAAAGTTTGACAACGCCGAACCGACTGAAGAGTCAGTTCCGATCTCGGCGCTAGCCCCTCCTCAAACACCAATATCAGCGGCCACAGCAAAAACGTCACCAGGCGCAACAAGTAGTAAGAAGACGGCGCAATTGAATCCATCGGGCGCCTCGACTATTGAGCAAAACTATATATTTCTGTGTCCCTCGTGCGGCAAGGCCTACAAGACCCAGTTTGAGTGGCGTCGCCACATTAATGATGCGCACAACTTTGACAAGCGGCAATACTTGAATATGCGCCAGTTGGACAAGTACCGCTATCAGTGCACGCAGTGCAAGGATATTGTGAGCAGCTCGAAACTAAAGGGTCTGCAAGATCATCACTTTCGTCATCTGCCCTACCGCCTGTATCTGAAGTGTCTTGTCTGCGGCACATGCTACAATCACAAGCCCAACATAGCAGCTCATTTGCGTACGCGCCACAACATCTACGAACGCGATACGCCGTGGCGAGAGTTGCAGCCGAAGCCACAGTACAACTATGTGATAATGAAAGACAAGGataaagacaaagacaaagacaaggATGGTCGTGGTATTTCTTCCACATCATCGTCACCAATACCTGGGAGCAGTAGCTGTAATGCCGGACGCTCTTTGAAGCCGCAGCCAGGCGTATTGCCCACTCGACCAGCTGGCCTGAATACGCTAGAGGACAGCATTTCATATCATAACGCTGTGGATTTGGACTTCATCACGTACTATTGCCCCAAGTGCAATAAAAACTTTGATTCGCATGCCTTCTGGCGGAAACACATTGTGGAGCAGCATAATTACAACAGCCGTCAGGGTCTCAATTTTCGTCAAATCGACATTCATCACTATTTGTGCCTAGAGTGCTACAAGCGTGTTACTGTTACCCACACAAAGGGCGCCATTGGCCAACTGCAGTCACACAAGTTCCGACATCTGCCCTACCGATCTTTCAAGTGCCTGACCTGCAATGGAGAATTTGTTCGCAAGCAAATGTTCTTCAAGCACCTGAATCGCGACACAAATCGCTGTGACAACAAGCCGTTAAGTGCACAGGAAACCGACGACGATGCTACAGAGCCGCCAGAGAGTTTAGCCAGCGGTGGCGGTGATAGTGGAATAGTGCAAGCTGCTGCCATAGAGGAAGTGGATCCCGCTGCATATCGCCTAAGATGTCCTCAATGCGGAGATAATTTTACCACCACCAGCAAAGCGCTGTGGCGTGAACACATCAACATCTATCATGGTCTCGGCAAGCGAGACCAGCTGCATATGCGAAAGATCGGTGACGAACTCTATCGCTGCACGGATTGTGACGAGCAGTTGCAATCAAAGCATTTGCGGGTGCTGCAGGAACATCGCTTTCGCCACTTGCCCTTTGCCGCCTACATTCGATGTCAGCTGTGTGAACACCAGAAGGATGCACTGGGTCATGGGGCTGTTGCAGCTGGTCTGCACAGTATGTTCGAATTGCAGCAACACATACGCGACAAGCATCCCGATTTGGCTGAGAGCGATGAACCAATGGAAACACTCCTTGATGATGCTGACGACAGTCAGCCGGCAAACAATGAGTCTGCAGCCAATGGACGGTATATGCCACTACCGCCGCATTTACTGGACGATGATGTTGATGACATGGAATTTGGGGATCAGTATCTGCTTGGCTAA
Protein Sequence: MEGMDLWTSMFSADFEEGDDGVADNYNNDSNVHVEDIMGDEEEDEEEDEEQERDVDEIEEEGEGQGDDSRRRRKEKAHEPDDDAIFDFELEPIVSIAEPELEPARRGTVALAPPMPTGPPVRAMHRQSLPASFGSSLMPRGGSVVGATPATRPTTSQINATDENGVPINYELGVIYICPACGAEYRQQDMWKRHMNQMHQYNTRKGLNFVAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCFICKREYKYRQDLMVHLRMVHCDEVVAMMRDGDTSAGRKTRVREPRTEQNLCQPSAPILGDDDSRQLKHEHVETDAAGDEDDKRKRSHPAAAGNGSSGVGSAAEICEDYIHYMCPDCSTDCDTHAQWSQHIEFVHDYVSRRGLNFRCVDMQMQCLECKQFVIPNTIKTLRAHKFSHLPQPNWMRCKLCYKGYTEHHELVTHLLKQHHLETLMPDSEETEEPIYIASGGEDVEDKTDNGCDEESTHWDEAPRRGGRISSDDMYEPHIDYLCPQCGREFIEKKHWRTHVVQVHGMNDLGKLNFEVINDRQLKCTECDKIITNAYGIQNAQQHRITHLPYKAYARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKAAAVGAAPSAATSQSAKTQTPRKQIVTVANETYEIIYLDEEQSSPGNNNINEENDFGEQMQADDDEYAISSSRQLPPAATTNQNHNPNRYKCVDCGSLFPTQAALKTHISEEHDFMDTLYSAKKFDNAEPTEESVPISALAPPQTPISAATAKTSPGATSSKKTAQLNPSGASTIEQNYIFLCPSCGKAYKTQFEWRRHINDAHNFDKRQYLNMRQLDKYRYQCTQCKDIVSSSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIYERDTPWRELQPKPQYNYVIMKDKDKDKDKDKDGRGISSTSSSPIPGSSSCNAGRSLKPQPGVLPTRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEQHNYNSRQGLNFRQIDIHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDNKPLSAQETDDDATEPPESLASGGGDSGIVQAAAIEEVDPAAYRLRCPQCGDNFTTTSKALWREHINIYHGLGKRDQLHMRKIGDELYRCTDCDEQLQSKHLRVLQEHRFRHLPFAAYIRCQLCEHQKDALGHGAVAAGLHSMFELQQHIRDKHPDLAESDEPMETLLDDADDSQPANNESAANGRYMPLPPHLLDDDVDDMEFGDQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00602113;
90% Identity: iTF_00520883;
80% Identity: -