Basic Information

Insect: Drosophila formosana
Gene Symbol: -
Assembly: GCA_035045625.1
Location: JAWNOW010000272.1:765211-768405[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.1e-05 0.00072 19.8 3.5 1 23 169 192 169 192 0.97

2 17 0.0015 0.097 13.1 3.3 1 23 240 263 240 263 0.96

3 17 0.00064 0.042 14.3 3.3 1 23 326 349 326 349 0.96

4 17 0.011 0.71 10.4 0.4 2 23 400 421 399 421 0.97

5 17 3.4 2.2e+02 2.6 1.5 1 23 501 527 501 527 0.90

6 17 4 2.6e+02 2.3 0.6 1 20 534 553 534 555 0.75

7 17 0.02 1.3 9.6 0.6 1 23 564 586 564 586 0.94

8 17 0.00029 0.019 15.4 2.1 1 23 593 615 593 616 0.95

9 17 0.00036 0.023 15.1 1.4 2 23 624 645 623 645 0.96

10 17 0.0037 0.24 11.9 0.0 2 22 672 692 671 695 0.89

11 17 0.0076 0.49 10.9 0.6 1 23 735 758 735 758 0.96

12 17 1.7 1.1e+02 3.5 3.4 1 22 765 786 765 786 0.96

13 17 0.0071 0.46 11.0 1.6 1 23 795 818 795 818 0.97

14 17 4.1e-05 0.0026 18.1 0.1 1 23 837 860 837 860 0.97

15 17 0.75 49 4.6 0.1 1 23 870 892 870 892 0.91

16 17 0.0001 0.0067 16.8 3.2 1 23 898 920 898 920 0.98

17 17 5.3e-05 0.0034 17.7 0.9 1 23 926 948 926 948 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.1e-05	0.00072	19.8	3.5	1	23	169	192	169	192	0.97
2	17	0.0015	0.097	13.1	3.3	1	23	240	263	240	263	0.96
3	17	0.00064	0.042	14.3	3.3	1	23	326	349	326	349	0.96
4	17	0.011	0.71	10.4	0.4	2	23	400	421	399	421	0.97
5	17	3.4	2.2e+02	2.6	1.5	1	23	501	527	501	527	0.90
6	17	4	2.6e+02	2.3	0.6	1	20	534	553	534	555	0.75
7	17	0.02	1.3	9.6	0.6	1	23	564	586	564	586	0.94
8	17	0.00029	0.019	15.4	2.1	1	23	593	615	593	616	0.95
9	17	0.00036	0.023	15.1	1.4	2	23	624	645	623	645	0.96
10	17	0.0037	0.24	11.9	0.0	2	22	672	692	671	695	0.89
11	17	0.0076	0.49	10.9	0.6	1	23	735	758	735	758	0.96
12	17	1.7	1.1e+02	3.5	3.4	1	22	765	786	765	786	0.96
13	17	0.0071	0.46	11.0	1.6	1	23	795	818	795	818	0.97
14	17	4.1e-05	0.0026	18.1	0.1	1	23	837	860	837	860	0.97
15	17	0.75	49	4.6	0.1	1	23	870	892	870	892	0.91
16	17	0.0001	0.0067	16.8	3.2	1	23	898	920	898	920	0.98
17	17	5.3e-05	0.0034	17.7	0.9	1	23	926	948	926	948	0.98

Sequence Information

Coding Sequence: ATGACGAGGACATGCAGAATCTGCGGCGGTGCAGATGGGCGTTATTGGATTGAGACGCCAGTGAACAAGTATGCCGAGAAAACATTCAATCAACTGCTGTTGGAATTAGCAAGACTTGATGTCGCCTTGGATCAAGCTGACAAACTGCCACCCTGGCTTTGTGGCATCTGCGCGCAGAAACTGGAAAATGCCTATGACTTCGTGCTACAAGCCCGCGAATCTCATGAGCAATGGATTCAAAAACTCTCGACAGACCTCGCCATGGATGAAACGGAGAAGGGAGCTTTTGAGTGCCTGCGAGAGACCCCAATACAATTGCTTGAAATCGAGGGAGTAACTATTAAAATGGAGGAACAAACGGAATCTGCCACGCCACAATCACATCCAAATGTCTCCGTTGATCCTCTGATTAAAAAGAGCATTGTGGATGATGAgagcgatgatgatgacgatgatgtgCCATTGAAGCAGCGCAAAGTGAATCAGACAAAGTTGCCCATAAACCACAAATGCAACATATGCGGCAAAGCCTTTAAATACGTAACAAACCTCTTCAGACATAAGCAGCGAGATCATCCGAGTGCCGATCAAGGCAAGGTGaacataaaatcaaaagctgaAAGTCGGCCAAAGCCAATCCTTCACAACCTCACAAACAAATCAACAGTAGCGCGAAGCAGCATCAATTCAGACTTGGACAATGAAGAGGATAACTATTACAAATGTGATCAGTGTGATAAATCCTACAAGTATATAATGCTGTTAATCAAACACAAGCACAAGGTACATGGCGCCAACCAGTTGCCATCAGAGCCAATGCCAATATCAAGAAGGAAATCGAGCTCCGAAGAATCAACCAAACTGAGACCTCAACGCATAAAGCCGGCAAGCACGGATTCCTTAGTGCACAGCCTGATCAAAGAGGTCAAAACACCTGAGGAGGAAGACCTAGAAGGCGTTAGCTCAGACAATTATTACAAGTGCGATCAGTGTGACAAATCGTACAAATACATTGTGAGTCTTATaaagcacaaacacaaagaGCACAGTGAATACAAGGATTCCGATGAGGACGACGATGAACCAATGCCATCCAAATATACAACGGCAGTTTCAAACTCAAAACCCACACGCATCGATCGACGGGTAAAAGGCTTCGATTTGCATCGATGTAGACCGAATGGTATCAAGGAGATACAGTGTATGATCTGTTTACGTCAATTTGGTAAATTGAGAGAGCTGCGCAACCATCTAAGAGCACATCCCAAGGACTTAACATTTGAGGCCCATGGCGAACCCATCGAACGCATTGCTGAGGGCTTCTATCGCACAGCTGTTGAGTCAACTGCTGACGGTTTAAAAGCGCGTATTCTCAATGATCTTAAGGTTGGCTTGTTGGGCCGCTACTATTCCATCACCAACGAGGCACGCTACGAGATGAATCTGGACAGCTCCGATACCGACAGCGATGGAGAATATGGAGTTGTTGAGCGTCGCAGTTACGCCTGTGAATTGTGCGAGAGTCCTGCTACAATTTATCCCCGCAAGTTTCAGCTACATGAGCATCATCGACAGCAACATACTTGGCTCGAGGCGCCCTACATCTGTTCGCGTTGTGATTCGCGTTTTCTTAGTGCCCAGCTACTCGATCATCACACGAATAAACTCTGTCAGAACACCCTTAAGCGCTTTATGTGTGACAAGTGCCCACAACGCTTCTTCTGGCGGCGCAACTTGCGTGCGCATCTCGTCGAACACAAAAACAAGCAAGATAATTACCCCTGTGATCAGTGTTCACGTAGTTTTCAAGATAAAAGTGCAGTCACAAAGCACAAGCTGATGCATCACGATGGCAGCCACGAACTGATTCCTTGTCGTTGGTGCACTCGAACTTTTTATCGTCCAGCGTTATTACATAAGCATGTCAAACGCCATGGCTTCACCGGAGAGGATTTGCCCTTGGCGGAGACTTTGTTGGCCTATGCCGCCAAGTCAACCGGACCAAAGTCAATCGTCTGCAAACTTTGCGATGTGCAGTTTATTAGCATAGCAGATTTGAGGCGACACATTTCGATGCAGGGTCATAGTGAGGATGCTTCCAACTATATGATTAGCACAGAGGAAGGTTTCGAGTTGCACCTAGATGAGACGGACGACAGCGATGATGAGACCACTACTACAACCACTTCTGCTGGCAGAACCTACAAGTGTGATCTTTGCGATGCGATCTTTCAGCGGCGTCGCGACATGAGCGAACATCAGTATTCCTTGCATACGTTCGATAAATTACCTCATTCCTGTGAACATTGCATCTACAAGACGGTCGACAAGTACATGATGCAGCACCATTTGCGCACACAGTGCCTCAACGAGAAGAAGAAATTCAAATGTTCACGCTGCGGCTTCAAATTCATGTGGAAGGAGAATCTGGATCAGCATATGAACAGTCAGCATACTCAAATCTCAAGTTTGCCCCCAATTCAGACCAAGAGAAGTCGTCGCTTTAGATACCAGTGTCCGCAATGCTGGCGCTCCTTTGTTGTACAACCGAGCCTGGACAAACACATACGCGACATGCATGTGGCCAAAAAGAATCCCGGCAAAAAGTATCTCTGCTCATTGTGCGGCTTAGAAGCGCTAACTCCCAACAAGCTGGCAATCCACATGCAACGCCACAACGGCGAAAAACCACACAAATGCGATCTCTGCGACATGTCCTTTACAGTATTTTACGAGCTTAAGGTGCATCGTAGAAAACATACGGGCGAGCGGCCTTACCAATGTACATTTTGTGCCAAAGATTTCGCACGCCCCGATAAGTTAAGACGTCATGTTTACATGCACAGTGTTAAGCGTTAG
Protein Sequence: MTRTCRICGGADGRYWIETPVNKYAEKTFNQLLLELARLDVALDQADKLPPWLCGICAQKLENAYDFVLQARESHEQWIQKLSTDLAMDETEKGAFECLRETPIQLLEIEGVTIKMEEQTESATPQSHPNVSVDPLIKKSIVDDESDDDDDDVPLKQRKVNQTKLPINHKCNICGKAFKYVTNLFRHKQRDHPSADQGKVNIKSKAESRPKPILHNLTNKSTVARSSINSDLDNEEDNYYKCDQCDKSYKYIMLLIKHKHKVHGANQLPSEPMPISRRKSSSEESTKLRPQRIKPASTDSLVHSLIKEVKTPEEEDLEGVSSDNYYKCDQCDKSYKYIVSLIKHKHKEHSEYKDSDEDDDEPMPSKYTTAVSNSKPTRIDRRVKGFDLHRCRPNGIKEIQCMICLRQFGKLRELRNHLRAHPKDLTFEAHGEPIERIAEGFYRTAVESTADGLKARILNDLKVGLLGRYYSITNEARYEMNLDSSDTDSDGEYGVVERRSYACELCESPATIYPRKFQLHEHHRQQHTWLEAPYICSRCDSRFLSAQLLDHHTNKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQDNYPCDQCSRSFQDKSAVTKHKLMHHDGSHELIPCRWCTRTFYRPALLHKHVKRHGFTGEDLPLAETLLAYAAKSTGPKSIVCKLCDVQFISIADLRRHISMQGHSEDASNYMISTEEGFELHLDETDDSDDETTTTTTSAGRTYKCDLCDAIFQRRRDMSEHQYSLHTFDKLPHSCEHCIYKTVDKYMMQHHLRTQCLNEKKKFKCSRCGFKFMWKENLDQHMNSQHTQISSLPPIQTKRSRRFRYQCPQCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLEALTPNKLAIHMQRHNGEKPHKCDLCDMSFTVFYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00579434;
90% Identity: iTF_00589683;
80% Identity: -