Basic Information

Insect: Drosophila flavopinicola
Gene Symbol: -
Assembly: GCA_035042425.1
Location: JAWNLL010000339.1:242136-248962[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.6e-05 0.0016 18.8 2.1 1 23 240 262 240 262 0.97

2 18 8.6e-06 0.00054 20.3 0.4 1 23 268 290 268 290 0.97

3 18 0.0013 0.079 13.5 0.9 1 23 296 318 296 318 0.95

4 18 1.8e-05 0.0011 19.3 3.1 1 23 324 346 324 346 0.97

5 18 4.2e-05 0.0026 18.1 4.7 1 23 352 374 352 374 0.99

6 18 7.6e-05 0.0047 17.3 5.7 1 23 380 402 380 402 0.97

7 18 3.7e-07 2.3e-05 24.6 4.3 1 23 408 430 408 430 0.98

8 18 1.3e-07 8.3e-06 26.0 2.4 1 23 436 458 436 458 0.97

9 18 7.8e-05 0.0049 17.3 6.7 1 23 465 487 465 487 0.97

10 18 0.00014 0.0084 16.5 6.5 1 23 493 515 493 515 0.98

11 18 1.2e-05 0.00075 19.8 4.5 1 23 521 543 521 543 0.98

12 18 8.8e-06 0.00055 20.3 8.1 1 23 549 571 549 571 0.98

13 18 7.1e-06 0.00044 20.5 7.6 1 23 577 599 577 599 0.97

14 18 8e-07 5e-05 23.5 7.7 1 23 605 627 605 627 0.98

15 18 0.00025 0.016 15.7 9.5 1 23 633 656 633 656 0.95

16 18 8.8e-05 0.0055 17.1 0.9 1 23 662 684 662 684 0.98

17 18 0.00097 0.06 13.8 3.4 1 23 694 716 694 716 0.97

18 18 1.1e-05 0.00069 19.9 1.6 1 23 722 745 722 745 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.6e-05	0.0016	18.8	2.1	1	23	240	262	240	262	0.97
2	18	8.6e-06	0.00054	20.3	0.4	1	23	268	290	268	290	0.97
3	18	0.0013	0.079	13.5	0.9	1	23	296	318	296	318	0.95
4	18	1.8e-05	0.0011	19.3	3.1	1	23	324	346	324	346	0.97
5	18	4.2e-05	0.0026	18.1	4.7	1	23	352	374	352	374	0.99
6	18	7.6e-05	0.0047	17.3	5.7	1	23	380	402	380	402	0.97
7	18	3.7e-07	2.3e-05	24.6	4.3	1	23	408	430	408	430	0.98
8	18	1.3e-07	8.3e-06	26.0	2.4	1	23	436	458	436	458	0.97
9	18	7.8e-05	0.0049	17.3	6.7	1	23	465	487	465	487	0.97
10	18	0.00014	0.0084	16.5	6.5	1	23	493	515	493	515	0.98
11	18	1.2e-05	0.00075	19.8	4.5	1	23	521	543	521	543	0.98
12	18	8.8e-06	0.00055	20.3	8.1	1	23	549	571	549	571	0.98
13	18	7.1e-06	0.00044	20.5	7.6	1	23	577	599	577	599	0.97
14	18	8e-07	5e-05	23.5	7.7	1	23	605	627	605	627	0.98
15	18	0.00025	0.016	15.7	9.5	1	23	633	656	633	656	0.95
16	18	8.8e-05	0.0055	17.1	0.9	1	23	662	684	662	684	0.98
17	18	0.00097	0.06	13.8	3.4	1	23	694	716	694	716	0.97
18	18	1.1e-05	0.00069	19.9	1.6	1	23	722	745	722	745	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACCTTAGGCGGACCTCCGCCGTTGCCTAATAAATCCGATCATAAAGAGGACGGTGGCAAGCCGCCACACGGCATTGAAATGTATAAAGTGAACATTGAGGATATATCGCAGTTATTTACGTATCACGAGGTCTTTGGCAAAATCCATGGCGATGTGGTGAATCATGTGGCGGCGGTGCATGGCAGCCAGCTGCCACCGCCGCagctgccaccgccgccgccattaCCGCCACAAACGACGCATTCGgctggcgcagctgcagccgcagcggcGGCGTCCTCAAATAATGCAGCCGTTGCTGCAGTAATGGCCTCGgccaatgcagcagcagcggctgcagcgGCCGCCTCAGCAGCGGCgacagcacaacagcaacaacagcagcaacaacagcagcaacagcagcagcaacaacagcaacagccagcaACAAGCACAAATGCTGGAACACAGCAGGGCAGCGCCACGGTGACCACGACTAGCTCCGGCACCAACAACGGGGGGAATGGGGGCAACAACTCGACAACGACGACGGGTGAGTTGCTAATGCCGAAAATGGAGGGCGGCATCCATGGCGTCGATGGGCAGTCGAGCGTTGCGTTGGCGCCGGATGGCACGCCCATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTCCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAGCCGTTTATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCACGGCAAAATCCACATTGGCGGTCCCATGTTCACGTGCATTGTGTGCTTCAATGTGTTTGCCAATAATACGAGTCTGGAGCGCCATATGAAACGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGTCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACGCGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACCAAGACGTTTACGCGCAAGGAGCACCTCACGAATCATGTGCGACAGCACACGGGCGATTCGCCGCACCGCTGTAGCTACTGCAAGAAGACCTTCACGCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCACACTGGGGATTCGCCGCACAAATGCGAATACTGTCAGAAGACGTTTACGCGGAAGGAGCATCTCAATAACCATATGCGCCAGCACTCCAGCGACAATCCCCATTGTTGCAACGTGTGCAACAAGCCCTTCACACGCAAGGAGCATCTGATTAATCATATGTCGCGATGCCACACCGGCGATCGCCCCTTCACCTGCGAAACGTGCGGCAAGTCCTTTCCCCTCAAGGGCAATCTGCTTTTCCATCAGCGCAGCCACACCAAGGGTCAGGAGTGCGAGCGTCCGTTTGCCTGCGAGAAGTGCCCCAAGAACTTCATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCCCCACCACCTgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCATTCGGCGACGACCACGATGCACACCATACAGCAGATAACAGCAGGAGCGGCAGCGGCTGGCGCCGTCCAGCTAGCGCCCGGCCTTGTGCCGCTGGTGACCAGCACGCTCATCTCTCACAATGCCCAGCAGtcgcagaagcagcagcaggcagcggcagcagtggcCGCccaacagcaggcagcagcagcagccgctgcacaGCAACAGGCGgccgctgcggcggcggcacagcagcaagcggcggcggtggcgcatcagcagcatcagcaacaggtcgctgcacagcagcaacaacagcagcagcagcaagcggcaGTGGCtgcgcatcagcagcaacaacagcagctgcagcagcaacagttgctgcaatTGTCCATACAGCAGGCGgcccatcatcatcagcagcatcagcaacaacagcagcagcagcagcaacaacaacagcaacaacagcagcaacaacagcagcatcatcaacagcaacaacagtccCATCCGCAGGCaccgccacagcagcaacaacaacagcaacagccgccgCCACAGGTGCCGATTGCATTGATAAGTGATCCGAGCGCGCTGGCACGTGCCGccatgcagctgcagcatctgCCCACAAATGTGGAGCAGCATCCAGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPLPNKSDHKEDGGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSAGAAAAAAAASSNNAAVAAVMASANAAAAAAAAASAAATAQQQQQQQQQQQQQQQQQQQPATSTNAGTQQGSATVTTTSSGTNNGGNGGNNSTTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAAAGAVQLAPGLVPLVTSTLISHNAQQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAVAHQQHQQQVAAQQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQQQQQQQQQQQQQHHQQQQQSHPQAPPQQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -