Basic Information

Gene Symbol
nfxl1
Assembly
GCA_035045575.1
Location
JAWNOV010000167.1:4158241-4162185[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 2e+04 -8.1 6.4 15 19 151 155 150 155 0.82
2 21 0.13 1.3e+03 -0.3 0.4 4 10 186 192 185 192 0.95
3 21 6.5e-08 0.00065 19.8 15.5 1 18 200 216 200 217 0.98
4 21 1 1e+04 -3.2 2.7 6 10 243 247 242 247 0.89
5 21 6.3e-08 0.00062 19.9 17.5 1 19 253 272 253 272 0.97
6 21 0.57 5.7e+03 -2.4 1.2 5 10 296 301 296 301 0.94
7 21 1.3e-07 0.0013 18.9 15.3 1 19 307 327 307 334 0.95
8 21 0.027 2.7e+02 1.8 1.0 5 12 350 357 350 357 0.92
9 21 3.3e-08 0.00033 20.7 10.3 1 18 361 378 361 379 0.96
10 21 0.7 7e+03 -2.7 0.4 1 5 388 392 388 397 0.73
11 21 0.74 7.3e+03 -2.7 1.8 5 10 402 407 402 407 0.95
12 21 0.0045 44 4.4 19.2 1 18 413 430 413 431 0.97
13 21 3.4e-08 0.00033 20.7 14.7 1 19 440 458 434 458 0.90
14 21 0.37 3.6e+03 -1.8 1.1 6 10 486 490 485 490 0.92
15 21 0.00016 1.6 9.0 8.6 9 18 503 512 501 513 0.91
16 21 0.011 1.1e+02 3.1 5.6 1 11 525 534 525 535 0.95
17 21 0.86 8.6e+03 -2.9 1.4 6 10 590 594 589 594 0.88
18 21 7.7e-06 0.077 13.2 4.5 1 11 600 610 600 611 0.96
19 21 2 2e+04 -6.9 5.9 1 10 624 631 624 631 0.78
20 21 0.016 1.6e+02 2.6 14.1 4 18 641 655 639 656 0.93
21 21 0.00011 1.1 9.5 8.4 1 16 707 721 707 727 0.92

Sequence Information

Coding Sequence
ATGGAAAAATTCAACAAGGCGCAGGCAAAGAATTTAGCAGCTGCACAAAAACTAGTGGATGCATACGCCTCCAGCTCTGAAGATGAAGGCGAACTGGATGAGAAGCATATATTGGaTTTGTTATACAAGCACTACCAAGATGGATCAGCTGGACAACGTGGTAACAATGGAAATTCTAATGCCAATCGCACAGCAACATTCCTGGAGAACACTTTACACTCGGGAGCAGCAACATGTTTGATTTGCATTGGCAGCATACGCAGAGTGGAGTCCATTTGGTCCTGCAAGAGTTGCTATTGCTTCTTCCACCTGAATTGCATCCAGAGATGGGCCAACGATAGTGTTATGCAGCTAAAGATCAAAGCGGAGCAGCAAAATGGCAATCAGGGACATTATAATCATCTGGGAGAGTTTGTGCCGCCCAAGCGTCAAAAGTCGCTGCATTGGTGTTGTCCACAGTGCCGCAGAGATTATCAGCCGGCAGATCGACCCACACAGTATGATTGCTTCTGTGGCAAGGAGCTGAATCCACAGCCACAGCCCTTTCTGGTGCCGCACTCCTGTGGCGAGATCTGTGGCAAGTTGTTGCAGCCCAAATGTGGCCACGATTGCAAGCTGCTCTGTCATCCGGGTCCGTGTCCACCCTGTGCTCAATTGGCGCACAATTCGTGTCTTTGTGGCAAGTCTGCTCCGCGTTCAGTGCGTTGCATCGACAAGACGTGGCAGTGTCAACAAACGTGCCAAGCGCTTTTAGCCTGCGGCAAGCACAAGTGCAACCAAAAATGCCATCGACCTGGCCAGTGTCCACCCTGTACCAGCAAGAGCTCCCAGCCCTGCGATTGCAAGCGGGAAGTCAGGGTTGTCAACTGCTCCGAACCCAAATGGAAGTGCAGCAAagtATGTGGCGCTCCATTTGCTTGTGGACTGCACAACTGTGAGAAGGTGTGTCATGCAGGTCCTTGTGGAGGCGGCGAGTGTCCTTTGGGCCTACGCAGTTGTCCCTGTGGCAAGAGTAGCAAAGCGGGCAACTGCAGCGAGGTGGTGGAAACTTGTGGCGACACTTGCCACAAACTGTTGTCCTGTGGCAAACATACTTGTGCGCAACGCTGTCATCGCGGAGCTTGCAACCTGtGTCTGGTGCGCACCAAGAAAAAGTGTCGTTGTGGTCTGCATGAAAAGGAGCTGCCCTGCTCCAAGGATTTCACCTGCGAGAGCAAGTGCAAGCAGATGCGAGATTGTGGCAAGCATGGCTGCAACCGCAAGTGTTGCGGCGATCAGTGTCCGCCCTGTGAGAAGATTTGTGGCAAGCAGCTGAGTTGCAACAAGCACAAGTGTCAGTCTGTCTGCCACAATGGTCCCTGTTATCCCTGCAAATTGGAGTCCCAGGTCAACTGTCGCTGTGGCAAGACACGACGCAGTGTGCCCTGTGGCAGGGAAAAGAGCGCCAGGATTGCCTGTCAGGAGCTGTGCAGgaTCTCTGCAAAGTGTCATCATGCCATAAAACATCGCTGTCACAAAGGAGAATGTCCGCCTTGTGGACAACCCTGTGGTTTGCCCAATGACACCAACAAATGTGGCCACATTTGCAAGGCGCGCTGTCATGCAGCCATCAGAGTCCAGAAGTCAGCGGATGCAGTGCGTTCACATGCCAACAAATATGAGTATCGTGCCCTGCCGCATCCACGTTGTGAGGAGGGCGTCAGTGTCACCTGCATTGGTGGTCATGAGCTGGCCACCTGGCCCTGCTGGAACTCCAAGCCGTCGTCCTGCCAGCGCAAATGTGCGAGAAAGCTGAAATGTGGCAATCACAGCTGCTCCTTGGTCTGTCATGCTGTGCCCAATCCGCAGGACATGCAACAACAGATTGGCTGCGGCAATTGCGAGCAAGGCTGTGACATTCCCAGGCCGCCAGGCTGTGTGCATGCCTGTGCCCGAGGATGTCATCCACCTCCTTGTGCACCCTGTAACTTCGTTATCAAGAGCAAGTGTCATTGTGCCCTCAATCAGAttgtttacaagtgcagcGAATTCTACAATGAAGTCGGAACTGAGCAGGAGATTGCCGAGCATCGGGAGAAGCTTAAAAGTTGTGGCAATCGTTGCCTCAAGAATTTTGCCTGCGGTCATCGTTGTCTGGCAATCTGTCACTCCGCCAAGTGTCCCAATCCGGAGTTGTGTCGTAAAAAGGTCCGAATTTACTGTGCCTGCAAGCGGATTAAGCTGGAAATATCCTGCGACAAACATCGAGCAGGTCAAACATCTTTGGACTGCGATGCCAACTGTCAAGCTGAACGCACAAAGGCGGAGGCGacggagcaacagcagctggagcagAGACTCCGCCAGGAGGAGGCCAAGAATCGAATTGAGCTGGAGAAATTCGAACAGAAGTTTGGCAAGCGTAAGCCCAAGGAGCGCAAAGCTGTAGATGTTGAGAAAACCAAATCAGACATCGATTGGAAGCGAGTAGCCATCTATATAGTATCTTTTCTGGCCGTGATGGGCGCACTGGGCGTGGCATACTATGCAGATAGCTAA
Protein Sequence
MEKFNKAQAKNLAAAQKLVDAYASSSEDEGELDEKHILDLLYKHYQDGSAGQRGNNGNSNANRTATFLENTLHSGAATCLICIGSIRRVESIWSCKSCYCFFHLNCIQRWANDSVMQLKIKAEQQNGNQGHYNHLGEFVPPKRQKSLHWCCPQCRRDYQPADRPTQYDCFCGKELNPQPQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQLAHNSCLCGKSAPRSVRCIDKTWQCQQTCQALLACGKHKCNQKCHRPGQCPPCTSKSSQPCDCKREVRVVNCSEPKWKCSKVCGAPFACGLHNCEKVCHAGPCGGGECPLGLRSCPCGKSSKAGNCSEVVETCGDTCHKLLSCGKHTCAQRCHRGACNLCLVRTKKKCRCGLHEKELPCSKDFTCESKCKQMRDCGKHGCNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLESQVNCRCGKTRRSVPCGREKSARIACQELCRISAKCHHAIKHRCHKGECPPCGQPCGLPNDTNKCGHICKARCHAAIRVQKSADAVRSHANKYEYRALPHPRCEEGVSVTCIGGHELATWPCWNSKPSSCQRKCARKLKCGNHSCSLVCHAVPNPQDMQQQIGCGNCEQGCDIPRPPGCVHACARGCHPPPCAPCNFVIKSKCHCALNQIVYKCSEFYNEVGTEQEIAEHREKLKSCGNRCLKNFACGHRCLAICHSAKCPNPELCRKKVRIYCACKRIKLEISCDKHRAGQTSLDCDANCQAERTKAEATEQQQLEQRLRQEEAKNRIELEKFEQKFGKRKPKERKAVDVEKTKSDIDWKRVAIYIVSFLAVMGALGVAYYADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00561426;
90% Identity
iTF_00510951;
80% Identity
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