Dfal000544.1
Basic Information
- Insect
- Drosophila falleni
- Gene Symbol
- -
- Assembly
- GCA_035045575.1
- Location
- JAWNOV010000011.1:1933272-1937200[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.5 1.9e+02 3.0 0.1 1 23 310 335 310 335 0.90 2 17 0.018 1.3 9.7 1.8 2 23 346 367 346 367 0.93 3 17 5.7 4.3e+02 1.8 3.0 2 17 378 393 377 404 0.75 4 17 0.0031 0.23 12.1 0.3 3 23 437 457 435 457 0.96 5 17 0.069 5.2 7.9 0.9 1 23 465 488 465 488 0.95 6 17 0.00028 0.021 15.4 1.9 2 23 493 514 492 514 0.97 7 17 2.1 1.5e+02 3.2 0.1 1 20 522 541 522 543 0.91 8 17 0.00028 0.021 15.4 0.4 1 22 562 583 562 586 0.91 9 17 6.3 4.7e+02 1.7 0.6 3 21 593 611 593 612 0.84 10 17 0.011 0.86 10.3 1.0 1 23 631 656 631 656 0.96 11 17 0.011 0.86 10.3 1.4 2 23 672 694 671 694 0.93 12 17 0.0041 0.31 11.7 0.2 3 23 701 722 699 722 0.92 13 17 0.027 2 9.2 0.5 2 23 726 748 725 748 0.96 14 17 0.00016 0.012 16.2 1.5 1 23 754 776 754 776 0.98 15 17 0.029 2.2 9.1 0.5 1 23 780 803 780 803 0.93 16 17 7.4e-05 0.0056 17.2 0.9 1 23 809 832 809 832 0.97 17 17 0.00012 0.0091 16.6 0.2 5 23 845 864 837 864 0.89
Sequence Information
- Coding Sequence
- atgtcggagaatttgaaaacaaataacGAATCTGAGCCTAGCTGCCTGCATTGCAGAGTGCACAATTCAAAGCAGCCGTTTCAGGAGATATTCGATGAACTGGGTATTGAAATCGAACTGCCCGAGTTGCTGGCTAAATATTTTCAGATAAATATCAAACCCGATccgaaaaaacaacaattgctgtGCGAGGAGTGCGTCAAAACATTAATTCGATTCTTCGACATTGATGAACTGCAGCGGGAACAGGATGCAGCGGCCAAGGATAAATCCAAGAAGCAGGACAAGAATGATTCAACGCCGGCAGCTGCAGTTAAAAAGGGaacaaaACGTAATCTGTCCAAGTCAAGTGAAAAGTCCATTGTTAAGACGACAGGTAAACGGAACAGCGCCAAGGAAGCAGGAACAGGGGAGCAGGAGCAGATTAGCGAACTCTTAAGGGACATACTGGATGATGAGAAGACGCCACCCGTTGACAAAGACAATGAGGCAGCTACAAAAGTCGCGGCAGAGGAGAAACAGTTGCAACAGGTTCCTGTCCAGGAAGAGGAGCAGGATGAGCAGGAAGAGCAGCAGGACAAGCAGCAGGAAAATGCTGATGAGCTGGAGTTTCTGCTCGAGCCTGAAGATGGTTCCTCTGACCTGGATGTGCGTCAATTCAAGGTGGAGAAGCGCACATCAGTTGACACCTCACAGTCGCTAAGCGAGGATGAATCCATGAAAGTGGAACCCTTCAACTTTGTTTTAATCAAGGAATCTGATGGCATTGAAGATCTGTTTGAATATCTGTCGACTGTAGTAAAGACTTGCTTTGAGACCTTGACCTTTGAATGGGCCACTGTCTGTTGTCACTGCTCGCTGAAGTGCAGCAAATTCGAAAGCTTGTTGACGCACATGCAGAAGTGTCACCAGCTGCCAGAGGAGCACTTTAAGTGTCCCATTGAACAGTGCAACGCGGAGTTGCCAAGTCGCAAATTCTTGGCCATGCATTTAGTTCTAATGCATGCTCCTGTGGCAGACATACCCATTTATGGCAGCTGTCCCGAGTGCAACATGACCTTCTCCAATATATTGCAGTACAATAAACACTCCTGTGCCCATGTCATCAAGAAACGTCGTGGCGCCCGCTTGTATTGCGAAATGTGCGGCTTGGAGTTCCCCTCCTGGAAGCGCTTTAACTTTCACAATCAATTCCATTTGGAGAGACATAGGCCACGTGCCTGCTTTGTTTGCAGCTATGCGGACAACAACATCGATGAACTCTTTCAGCATTTGCATTATTCACACGAACCCGAAGGCACGCTCTTCTGTGATATCTGTGATCGCTATTTTCGAGATCCTGCTGTGTTTACGGATCACAATAAAACCCATGCGAATGTCGGCGGTGCCACACATTACTGCAGCAGTTGTAGCGCCACCTTCGAGACACGCGGACGTCTGGGTAGTCACATACGCGCAATGCATGGATCCATCATTAGCTGTGAGCTGTGCAGTCGAGAATTTGCCTCGGAGTCCAACTACCACTCGCACATGAAGAAGCATCTGATCATTGAGCGTGAAGTGCATGTGTGCAGCAATTGTGGCATCCTCAGTGAGAGTCAGGAGAAGATGATGTCTCACATCGAGAATGTTGATACGGTTTGCTTTGGCGTTGAAATCTATGTGGAACTTTTAAGGGATGCCTATGTCTGTGAATATTGTACAGCATATTTTAAGCAGAAAACTGATTTGCGTGCCCATCGTGAATCTGGCATACATAAGGATGGCTTCTGCTGGTGTCAGCCGTGTGGCAAGGAGTTTAATGACATGAAAATATATCGTCATCATTTGCGCAACTTGCAGCAACAATTATCGGATGTTGAGCATCGCAAGCTGGAGATTTGTGTGTACTATATGTGCGATTATGAGGATTGTTTTGAGTCGTACATCAATTGGAATTCTTTGTACACTCACAAGAAACGGAATCATAATGTGGCCGATACGCAAGTGTCAGCGGCAAAGGTTAACGAATGGATCTGTCAGTTCTGCCAGAAGGTTTGTCGCTCCAAGATGTCGCTATCGGTGCATGTGGCACGCAGTCACAACAACAATAATGTGATTTGTCCAATCTGCAAGGCTTCTTATAAAGATGATGAGGCGTTGAAGAAACATCACGCCTATTGGCATGAACCGATGAAGTGTGCGTTGTGCCTGAAAATGGTCAAGAATCGTCGCAACTATGACACACACATGAATGTGGTGCACTCGAATAATAAGCGTTATAACTGCGATGTCTGCGAAAAAGGATTCTATCACAGGAGCGAAATGGAGGCACACAAGCGATTGCATTCACAATTGTATAGCTGCGCACAGTGCAGTTTCAGTACGAGGAACAAGAATTCATTGTCGGTTCATGTTCTTGGACAGCACTACAAGAGATTCGCCTTTGAGTGTAAGGCTTGCAACAAGAACTTCGGACGTCGTCAGGGTTTAACCAATCATATGCAACGTGTCCATGGCTCCAAGAATATGTGTAGTGATTACTTTGAGGGAGGCTGCAACAAAACATTTAGCACAATCTCACAGTTAAACGTGCACGTGCGTAAAGCACATGATAACGGCATTGAGTTGGCCGATCTCGTGGAGGACTACGAGGAGGATCACGACGAGCAGCAGGACGGCGAGGATCAGCAGGAGGTATACGAGGTGCAGGAAGAAGATCAGGCccaggagcaggagcaagaTCAGgcgcaggagcaggagcagcagcaggaacagcagcaggaacGAAAATCGAAGCGTAAGACTTCAACAGCACCATCAACATCTAAGAAACGCTGCATCCGCATCATTGATGATACACAAATCGAGTTCATGAGCGCCGATGAGGATAATATGAGCATTATGGACGCGGAAAACCTTGACAAAGAAACCAAATTCAAACCAACTCCagtaaaaaggaaaaagaaacAGAGTTAA
- Protein Sequence
- MSENLKTNNESEPSCLHCRVHNSKQPFQEIFDELGIEIELPELLAKYFQINIKPDPKKQQLLCEECVKTLIRFFDIDELQREQDAAAKDKSKKQDKNDSTPAAAVKKGTKRNLSKSSEKSIVKTTGKRNSAKEAGTGEQEQISELLRDILDDEKTPPVDKDNEAATKVAAEEKQLQQVPVQEEEQDEQEEQQDKQQENADELEFLLEPEDGSSDLDVRQFKVEKRTSVDTSQSLSEDESMKVEPFNFVLIKESDGIEDLFEYLSTVVKTCFETLTFEWATVCCHCSLKCSKFESLLTHMQKCHQLPEEHFKCPIEQCNAELPSRKFLAMHLVLMHAPVADIPIYGSCPECNMTFSNILQYNKHSCAHVIKKRRGARLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYADNNIDELFQHLHYSHEPEGTLFCDICDRYFRDPAVFTDHNKTHANVGGATHYCSSCSATFETRGRLGSHIRAMHGSIISCELCSREFASESNYHSHMKKHLIIEREVHVCSNCGILSESQEKMMSHIENVDTVCFGVEIYVELLRDAYVCEYCTAYFKQKTDLRAHRESGIHKDGFCWCQPCGKEFNDMKIYRHHLRNLQQQLSDVEHRKLEICVYYMCDYEDCFESYINWNSLYTHKKRNHNVADTQVSAAKVNEWICQFCQKVCRSKMSLSVHVARSHNNNNVICPICKASYKDDEALKKHHAYWHEPMKCALCLKMVKNRRNYDTHMNVVHSNNKRYNCDVCEKGFYHRSEMEAHKRLHSQLYSCAQCSFSTRNKNSLSVHVLGQHYKRFAFECKACNKNFGRRQGLTNHMQRVHGSKNMCSDYFEGGCNKTFSTISQLNVHVRKAHDNGIELADLVEDYEEDHDEQQDGEDQQEVYEVQEEDQAQEQEQDQAQEQEQQQEQQQERKSKRKTSTAPSTSKKRCIRIIDDTQIEFMSADEDNMSIMDAENLDKETKFKPTPVKRKKKQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00523180;
- 90% Identity
- -
- 80% Identity
- -