Dezo002324.1
Basic Information
- Insect
- Drosophila ezoana
- Gene Symbol
- sba
- Assembly
- GCA_035045725.1
- Location
- JAWNOU010000036.1:4593625-4605132[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-09 2.2e-05 24.2 0.0 10 58 260 299 253 322 0.81
Sequence Information
- Coding Sequence
- ATGGCTGCCGCATCCGCTggccaacagctgcaacagcagcaacagcaacagcagcagcacaaattgaatattgttGGCAATGCGGAATCGGTTGCTGGCGTGCTGCAGGTGAACGAGttgcaacagcatcaacaacagcagctcaacatgtacaagcagcagcagcagcagcaacagcagcagcagcaccagcaccaccaccaccaaatgttgcagcaacagcagcaacaattctATCAGCAGCAAACGAAATTTGTATCGCGGGTCGTTACAAATGCcgcaatgcaacaacaacaacaacagcaacaacagcagcagcaacaacaaatcttACCAGCTGGTTTGGTAAATGGTAGCGCCAACATGATGCAAGCCACAAATGTTGCcgggcagcaacagcaacagcagcagcaacaacaacgccacaGTCAACACATTTTTGTCTGTCCAGCCATCGGCtcgccgctgcagcagcagcagcagcaacagcaacaacagcaaaccaAACAACGTGCTGCACAAATAAAGCTGCCTTTAaagtcagcagcagccgcatcagcaactgttgctgccacgcACTGTATGCCGGCAACAATTGCATCGCGTCAAATGAGTCAGAACaatcaacatcagcaacagcagctcttTGCAAAGAATGTGGCTAAAACCAACAATGCCAACAATAATGCaggcaacaccaacagcagcaacaacaaccacagcggcaacaccaacaacaacaacagcagcagcattaacaatagcaacaacagcgcaaATTTGGCTCCAGGCTGGCGTCGACtaaccaacaacaatgaagTGGCCTACATCAGtcCAACGGGCAAAACGCTGCGCACACAATTCCAAATCAAGGACTATTTGCTAACACAGGGTACCTGCAAATGCGGCCTGCCGTGTCCGCTGAGGCCGGAGTACTTTTTCGATTTTAATGCCCAGTGCCACAAGTTCCTGTCGCGAGTGCGCTCAAATGCACCAGAGTCGGAGTAA
- Protein Sequence
- MAAASAGQQLQQQQQQQQQHKLNIVGNAESVAGVLQVNELQQHQQQQLNMYKQQQQQQQQQQHQHHHHQMLQQQQQQFYQQQTKFVSRVVTNAAMQQQQQQQQQQQQQQILPAGLVNGSANMMQATNVAGQQQQQQQQQQRHSQHIFVCPAIGSPLQQQQQQQQQQQTKQRAAQIKLPLKSAAAASATVAATHCMPATIASRQMSQNNQHQQQQLFAKNVAKTNNANNNAGNTNSSNNNHSGNTNNNNSSSINNSNNSANLAPGWRRLTNNNEVAYISPTGKTLRTQFQIKDYLLTQGTCKCGLPCPLRPEYFFDFNAQCHKFLSRVRSNAPESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00530949; iTF_00588842; iTF_00516258; iTF_00495858; iTF_00512717; iTF_00540365; iTF_00582253; iTF_00493646; iTF_00532367; iTF_00476621; iTF_00572595; iTF_00545235; iTF_00546651; iTF_00559484; iTF_00573314; iTF_00599583; iTF_00551584; iTF_00473060; iTF_00544488;
- 90% Identity
- iTF_00530949;
- 80% Identity
- -