Deug002570.1
Basic Information
- Insect
- Drosophila eugracilis
- Gene Symbol
- -
- Assembly
- GCA_018153835.1
- Location
- NW:577017-578427[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.16 5.6e+02 0.4 0.1 12 46 146 179 138 184 0.82 2 6 0.0019 6.8 6.6 0.1 20 43 207 230 199 236 0.83 3 6 0.0022 7.6 6.4 0.2 19 45 234 260 228 265 0.84 4 6 0.0034 12 5.8 0.2 21 44 296 319 293 323 0.86 5 6 0.0012 4.3 7.2 0.9 21 43 324 346 319 350 0.86 6 6 1.1e-05 0.039 13.7 1.3 14 47 345 378 341 381 0.90
Sequence Information
- Coding Sequence
- ATGGAGAACCTGTGTCGAATTTGCGGTGGCCGCTACAAGTCCTTGGTGGGCATTTTCGACAAGCAGGAGCCGCAGCATTCTGTAGTAGGAGATGAACCAAATATTGCCGAAATGATCCAGACATGTGCCAACGTTGAGTTGGATCGTGAAGATTGCCTGCCCCAAAAAATCTGCATTGCATGTGTCCACGATGCACGAACTGCATACGGGTTCAAGCGAAGATGTGAAGAGAGCCATAGGAAGTTTTACATGGTGATCAGTGGTCAGCAGTTCATCAAAGAAGAACCCAACGATAACTATATGATTCTTGAGGAATTCTTAGATGAGGAAATCAATGCGAAGCTTGAGTTCATAGAGGAAACTTCCCCACAGCCACCTGCAAAAGAAGAATCGTCTAATACAgccaacaaaaagaacaacacAAAATTAAAGGTCACTAAAGAACCTAGAAAACAGCGAAAAGTGGAGAAGTTCAAGTGCGAACTCTGTACCAAGGAGTTCAAGCACCAACAAAACCTACTGGAGCACATGAAAATTCATAACAATTCCCACGTATGTCAAAACTGCGGAGAGCGATTTCTTTTCAAAACCGATCTGGATAAGCACCAGTGTTATCAAACCAGCGATTCCACTGTTGAGTGCCCCATTTGCTTGATGGTGTTTTCGAATACCCAGAGCCTTGACAAACACAAGTGTCAGGAGATGAAGAGTCAGCCCTTCCAATGCCCCCACTGCCCACAGACCTTTAGCAAAGACCGATACCTTAAGGCCCACCTGTTGATCCACCAAGAGTCGATTAAAGGCACCGGCCCACACAAGTGCTCGTACTGCAGCTCAACGTTCTTTAATAAGTCGGCTCTCAAGGTGCATATTCTCGCGCACAAGGGTGAGCGGCCACACTCCTGCCCGCTCTGCGATTCCAACTTCCGTTCACAGTACGCTCTTAATTCGCACATCCGCACTCACACGGGCGAGAAGCCTTATACATGTCCACTTTGCCCCAAGAAATTTACGGACAACAATAACCTGGCCAAGCATCGCAGACGCCACACGGACGAACGCCCCTACAAATGTTCCATCTGCCACCTGGCGTTCCGTGAGAAGCACCATTTGAAGAGACACTTTCTAGGCAAGCATAGGGATGGCGACCaaaaaataccttaa
- Protein Sequence
- MENLCRICGGRYKSLVGIFDKQEPQHSVVGDEPNIAEMIQTCANVELDREDCLPQKICIACVHDARTAYGFKRRCEESHRKFYMVISGQQFIKEEPNDNYMILEEFLDEEINAKLEFIEETSPQPPAKEESSNTANKKNNTKLKVTKEPRKQRKVEKFKCELCTKEFKHQQNLLEHMKIHNNSHVCQNCGERFLFKTDLDKHQCYQTSDSTVECPICLMVFSNTQSLDKHKCQEMKSQPFQCPHCPQTFSKDRYLKAHLLIHQESIKGTGPHKCSYCSSTFFNKSALKVHILAHKGERPHSCPLCDSNFRSQYALNSHIRTHTGEKPYTCPLCPKKFTDNNNLAKHRRRHTDERPYKCSICHLAFREKHHLKRHFLGKHRDGDQKIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00505575;
- 90% Identity
- iTF_00505575;
- 80% Identity
- iTF_00505575;