Deug012202.1
Basic Information
- Insect
- Drosophila eugracilis
- Gene Symbol
- ken1
- Assembly
- GCA_018153835.1
- Location
- NW:6353960-6356344[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.014 15.5 2.8 2 23 198 219 197 219 0.97 2 12 0.0054 0.34 11.1 0.1 1 23 225 250 225 250 0.92 3 12 0.12 7.4 6.9 0.1 3 23 259 282 257 282 0.92 4 12 0.0011 0.071 13.3 1.0 2 23 295 316 294 316 0.96 5 12 8.5e-06 0.00054 19.9 0.6 1 23 323 345 323 345 0.98 6 12 0.003 0.19 11.9 0.2 1 23 351 373 351 373 0.98 7 12 0.0068 0.43 10.8 1.7 1 23 379 402 379 402 0.97 8 12 0.0091 0.58 10.4 4.0 1 23 408 430 408 430 0.96 9 12 0.00077 0.049 13.8 2.9 2 23 437 458 436 458 0.96 10 12 0.00025 0.016 15.3 1.1 3 23 547 568 545 568 0.95 11 12 0.0027 0.17 12.1 1.1 1 19 574 592 574 596 0.95 12 12 1.5e-06 9.8e-05 22.3 0.9 1 23 602 624 602 624 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTAGGGAACTTCAGTATTCCGTCTATTCGCTGTGTCGCATCTGCCTTATCCATCTGGAGCACGGTGTTAGCCATAATCTGTTCCTGGTTCCAggcttggccaaaaaactgtGCGTGTGCACCTCCTTGTCGGTGGAGCAAGCAGATGGCTTTCCCAAAAACCTGTGCACTGTCTGCTTCTCGAAGCTAAATGACCTGCACGATTTTCGGGAACTGTGTGCTGGCTCCATAAGACGTTTCAAGGAAATGGTGGCTGGTAATAGAATTATGCCTATGGGGGTTTTCGAGCCCGTTGCAGAAGATTCCGTTGCATTGAGCAGGCAGGATGAGCAGGCCAGCTTTGATCCACTGCAAAATAATAAGCTGGAAATAATTGACAACGAGGAGGAGGTGTTCAAAATGCTGGAAACGGTGGACAGAGAACCACAGGATCACGCTATTTCTTCAAGCCATGATGGTTCTTCCACCgaagaggagaaggaggagaacAAGAAGCAGGCCGAAGATTTTTCTAGTGAAGATGAACAACCTTTAGCCAGGCGGAGAAGGATGCCTAGCGATGAGCGTCAATTGAATCGCTTAATAACCTGTCCCATCTGCcagcaaaaatttaaaaagctaTCAAAGTACGAGGAACATATGAAGCATCATAATGACCTGTTGCCTTTCCAGTGTGAGGAAGAAAGCTGCCGAAAAGGCTTCACAACTGCTGGGGCACTGCGTCTCCACGTAGACTATGCGCACACAAAGAAGGCGGATGAGATTCCCTGCAGCGTGGAGGGCTGTAGATTACTATTTCCCCGTCTCCGCCTGTTGACCATTCACTTAAAGAAGGTGCACAATCAGGCGAGAGTGAGTGCTCCACGGGCTGAACAGCCTTGCAGGGAGTGCGGAATGGTCTTTCGCTGCCCGGTGGCTTTGAAAAAGCACATGTACAAGCACACAGGCGAAGAGCTTCCGTACCCCTGCAACATCTGCGGCAAGGGCTTCCATATCAACAGTGCCTTGAAGAATCATCTTCTCCGGCATGCTGGGATTAAGAACTACGTGTGTCCGTACTGCGGAGTTGGGAAAACCACTCGCCAGGAATGGACCAAGCATTTGCTTACTCACACCCAGGAAAAGCAATTCAAATGCGACATCTGCGACCATGCCACCCATACAAAGCGGGCTCTGGATAGCCATGTGAAGATTGTACACGAAAAAATCCGGAATTTTGCATGTCAGTACTGTGGTAAGACGTTTGGAAAATCCCACGCCTGCAAAATTCACGAGATGACACACACTGGTGAAAAGCGATGCGAGTGCAAGGTTTGCGGGAAGAAGTTCCTGTATACGGAGAGTTTGACGAAACACCTGAAGATTCACGAAAAGAGCGTGGAAAGGGCTTTGGAAACCTATAGACAAAGGCAGGGAGAACCTGACGCCTTGGACTCCCAAGTAGACGCTGATCAATTGCTTAAAGTGTGTGCTGAATCCGTAGCCACCATTCCGAAGGATCCCCGCCGCGTGGAACGAGTTGACCTTGCTCAACTAGCCGGAACCGTAGTAAATCCCATTCCCACAGTTCAGGTCCCGGCCAGCGAAGTTCCAACTCGGACGAAGTTCGTTCAAAAAGAGGGCATGCACCTGTGCCCCGGATGCAGCCAGGGATTTAATAACCTGGGAAACATGAAGCGACATTACAAGAGTGTCCACGAGAAAGTCAAGGACTTTGAATGCCGCTTCTGCTCCCGACGTTTTGCCAACTCCCAATCACTGAAGCAACACGAGTGGATACACACTGGAGAAAAGCCCTATGAGTGCAAACTTTGTGGGACACATTTCCGCCAGGAAGCGGCTCTCATCCGCCACCAAAAGGTTCATGACGAGAAGCCGCCAAAGCCTCCCAGACCTGCCAAACAAATAAGCGAACGAGCGCGTCAGAAGGCAATGCAGAAAAGTGAAAGAAGACAAAAGGTCGAGGCTCTTCGGCAGGAAATTGCAGAAGCCGCTAAAGAGGAGCTCAAGGACTTGGCAATTCAACGGTCACTGGAGAAGCAGCAAAACACTTACGAACAGTATCAGGCAGCGGCAACTGACCAGAAAAATCCTGAATATAAGGAGGAACCTTGA
- Protein Sequence
- METRELQYSVYSLCRICLIHLEHGVSHNLFLVPGLAKKLCVCTSLSVEQADGFPKNLCTVCFSKLNDLHDFRELCAGSIRRFKEMVAGNRIMPMGVFEPVAEDSVALSRQDEQASFDPLQNNKLEIIDNEEEVFKMLETVDREPQDHAISSSHDGSSTEEEKEENKKQAEDFSSEDEQPLARRRRMPSDERQLNRLITCPICQQKFKKLSKYEEHMKHHNDLLPFQCEEESCRKGFTTAGALRLHVDYAHTKKADEIPCSVEGCRLLFPRLRLLTIHLKKVHNQARVSAPRAEQPCRECGMVFRCPVALKKHMYKHTGEELPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWTKHLLTHTQEKQFKCDICDHATHTKRALDSHVKIVHEKIRNFACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVERALETYRQRQGEPDALDSQVDADQLLKVCAESVATIPKDPRRVERVDLAQLAGTVVNPIPTVQVPASEVPTRTKFVQKEGMHLCPGCSQGFNNLGNMKRHYKSVHEKVKDFECRFCSRRFANSQSLKQHEWIHTGEKPYECKLCGTHFRQEAALIRHQKVHDEKPPKPPRPAKQISERARQKAMQKSERRQKVEALRQEIAEAAKEELKDLAIQRSLEKQQNTYEQYQAAATDQKNPEYKEEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00548237;
- 90% Identity
- -
- 80% Identity
- -