Basic Information

Gene Symbol
ct
Assembly
GCA_018153835.1
Location
NW:2812396-2886546[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.1e-27 4.3e-23 80.8 0.0 3 72 873 943 871 948 0.95
2 3 6e-32 4.2e-28 96.8 0.0 3 77 1325 1400 1323 1402 0.96
3 3 3.7e-31 2.6e-27 94.3 0.0 3 76 1603 1677 1601 1680 0.96

Sequence Information

Coding Sequence
ATGCAGCCAACATTGCCACAAGCCGCTGGGACAGCCGATATGGATCTGACGGCTGTTCAATCAATCAACGATTGGTTTTTCAAAAAGgagcaaatttatttattggcaCAGTTTTGGCAACAGCGGGCTACCCTGGCCGAGAAGGAAGTGAACACACTCAAAGAGCAGCTATCCACCGGCAATCCCGACAGCAATCTCAACAGCGACAACAGCGATACAGCAGCAGTTGAAGCAgttgttgcagcagcaacagcaaccaacGGTATCGAAGAggagcaaaagcaacaacagcaacaggaaaaCGACAGCGAAAAGCTGCTGACCAGCTCCATTGTTGCGGCCATAACGCTGCAGCAGCAGAACGGCAGCAATCTGCtggcaaatacaaatacaccGTCGCCATCGCCGCCGTTGCTCAGTGccgagcagcagcaacagttgcagAGCAGTTTGCAACAGAGCGGCGGCGGTGTTGACGGTGCCTGCCTCAATCCGAAGCTCTTCTTCAATCACGCCcagcagatgatgatgatggaagCGGCAGctgcggcagcagcggcggctttgcaacagcagcagcaacagcaatcgcCATTGCATTCTCCGGCGACTGAAGTCGCACTTCCCACAGAACAGCCAGCAGCAACGGTAAGTggtgcagcaacagcagcagcatcagcgtCTGCGACAGCAGCAACTTCCATTGCTAGTGGCATCATCAGGAGCGGTAGTAACATCAATCACACCAATAATAGCCACCAGGACGAAGAGGAGGTggatgaagaagaagaggacGACGAAGAGGATgaggacgatgatgatgaggaggagAATGTCTCGATGCAATCGAATGCTGATGATATGGAACTGGATGCACAGCAAGAAACCAGAACTGAGCCGAGTGcaacacaacaacagcagcacgATGAGGATCTTAAGGAGAACAAGGATGCGGCGGAGGCTAGTTTAAATGTTAGCAATAATCATACAACCGATAGCAATAATAGCTGTAGTCGAAATAATAACAATGGCGGCAATGAAAGTGAGCAACATGTGGCCAATTCTGCGGAGGACGATGATTGCGCCAACAACAATACAAATaccagcaataacaacaatactACCAACACCGCTaccagcaacaccaacaacaacaacaacaacagtaacaacagcagcagcggcaataGCGAAAAAcgcaagaagaagaacaacaacgGCCAGCCTGCTGTTCTATTAGCTGCCAAAGATAAAGAGATTAAAGCACTTCTGGACGAACTGCAACGCTTAAGGGCCCTGGAGCAAACGCACCTTGTTCAGATTCAGCGACTAGAGGAGCATCTGGAAGTTAAGCGTCAGCACATTATGCGATTGGAGGTCCGTCTCGATAAACAGCAAATCAACGAAGCACTAGCCGAGGCAACtgctttggctgctgctgctgctagcaacaacaataacaatagcCAAAGCAGTGACAACAATAAGAAGTTAAATACCACTGGAGTTACACCATTGGATGCATCATCGTCTATTGGCGATCTACCCGAAATGGCAAAAGGTCCAGTACCCACGGAAGATGAGGATGATGGCGAGGATCAGGCTATGCTGGTAGACTCTGAGGAAGCAGAGGACAAACCAGAGGTACCTCATCACCACGACGAGGTCGAtgacgaggaggaggacgagACCGAGGATCGGGAGGCGGTCAATGCCACCACAACCGATAGCAACGAgctcaaaatcaaaaaggaaCAGCaCAGTCCATTGCTCAGTCCACAATCGGCAATCGCCGCTGCGGCTGcggccgccgctgccgccgcctgcgccaaTGACCCCAACAAATTCCAGGCGCTTCTCATCGAGCGGACCAAAGCCTTGGCCGCCGAGGCGCTAAAGAACGGCGCCAGCGATACCATTAGCGAAGATGCCCaccatcaacagcagcaacaccaccaacaacagcaacaccaccagcaaaatcaccaccagcagcaacaacacctcCATCAGCAACATCACCATCacctgcaacagcagcaaaataGCGGTAGTAACAGCAATCCAGCGACCAATGATAGTTTGAACCATCATCATGGACACCATTTGCATAGCCATGCCTTATTGCATCCATCGGCGGCGCATCATTTGCATCATCAACAGAATGAATCCAGTTCGAATTCGAGTACACCGACAGCTGTTGGAATTATGAGTAATAATAACGTTGGCAACAATAGCACTGGCAACACGAATGCCACCAGTAACGCCACCGTTCAATTGGCCGCCAGTTTGGCCAGTTCACTGAATGGCAACAAATCGTTGTTAAAAGAGGATAGCAATGGTTTGGCCGCTGCCGCAATGGCTGCTCATGCCCAACATGCGGCCGCATTGGGTCCTGGATTTCTGCCCGGCCTGCCAGCTTTTCAATTTGCCGCCGCCCAAGTGGCCGCCAGTGGTGATGGCCGGGGTCATTATCGTTTCGCAGACTCGGAATTACAATTACCACCGGGTGCATCGATGGCTGGTCGTCTTGGTGAATCCCTTATACCCAAAGGTGATCCCATGGAGGCCAAGTTGCAAGAGATGCTACGTTACAATATGGACAAATATGCCAATCAGGCATTGGACACCCTGCATATATCGCGACGTGTCCGGGAACTTCTATCGGTTCACAATATTGGCCAGCGACTGTTTGCCAAATACATTTTGGGTTTGTCGCAGGGCACCGTTTCCGAGCTGTTGAGCAAACCAAAACCGTGGGACAAGTTGACGGAGAAAGGACGTGATAGTTACCGCAAAATGCACGCCTGGGCCTGTGACGATAATGCCGTCATGCTGCTCAAATCGCTGATACCCAAGAAAGattcTGGCCTGCCGCAGTATGCAGGTCGTGGGGCCGGCGGCGATGATTCCATATCCGAGGATCGGATTGCTCATATCCTCAGCGAGGCCTCCTCTCTGATGAAACAGAGCAATGTGGCCCAGCATCGGGAGCAGGAGCGTCGCAGTCACGGCGGCGAGGATTCGCATAGCAACGAGGATAGTAAATCGCCACCGCAAAGCTGCACATCTCCGTTCTTTAAGGTGGAACAGCAACTGAAGCAGCACCAGCATCTCACTCCCGATCAGGCTGCTGCCGCTCAGCATCGGGAAAGGGAACGCGAACAGCGGGAAAgggagcaacagcagcgacTGCGGCATGAGGATTTGGCCCAGGACAAGATGGCTCGTCTCTACCAAGAGCTGATTGCACGCACTCCCAGGGAAACTGCTTTTCCAAGCTTCCTTTTCTCTCCATCTCTTTTCGGAGGAGCTGCTGGCATGCCAGGAGCAGCTAGTAATGCCTTTCCCGCCATGGCCGATGAGAATATGCGCCATATGCTCGAACGCGAATTTGCCAAGCttcagcagcaccagcagcaacaacaggctGCACAAGCGCAGGCTCAGTTCCCCAATTTCTCAAGCCTGATGGCTCTGCAACAGCAGGTCCTCAATGGAGCACAAGATCTTTCGTtggccgccgctgctgccaaAGATATCAAGCTAAATGGTCAGCGATCTTCTTTGGAGCACAGTGCCGGCAGTAGCAGTTGCTCAAAGGATGGCGAGCGGGATGATGCATACCCAAGCTCGCTACATTGCCGCAAATCTGAGGGTAGCGGTACACCAGCACCACCTGTCCCGCCATCTGGCCAAGCTGGAGCCGGAGCACCACCTACAGTAGTACCACAAACTGGAGGCGCAAGCAGCAATTCGGCAGCGCCCAGTCCGCTAAGCAATTCAATCCTTCCACCAGCATTGAGTAGCCAAGGTGAGGAGTTTGCCGCAACAGCAAGTCCTCTACAGCGAATGGCATCGATTACCAACTCATTGATCACCCAACCACCGGTTACGCCTCACCATAGTACACCACAGCGACCCACGAAAGCTGTGTTGCCACCGATAACTCAGCAACAGTTCGATATGTTCAACAACCTAAACACTGAAGATATTGTGAGAAGGGTGAAAGAGGCTCTCTCCCAGTATTCCATCTCACAGCGATTGTTTGGCGAATCCGTATTGGGTTTGTCGCAGGGTTCCGTTTCTGATTTACTGGCCAGACCTAAACCTTGGCACATGCTTACCCAAAAGGGTCGTGAGCCCTTTATCCGCATGAAGATGTTCCTGGAGGATGAGAATGCGGTACACAAACTGGTGGCCAGCCAATATAAGATTGCTCCTGAAAAGCTAATGCGAACGGGCAGTTACAGTGGAAGTCCACAAATGCCACAGGGATTGGCCAGCAAAATGCAAGCAGCCTCACTACCAATGCAGAAAATGATGAGCGAACTGAAGTTGCAGGAGCCGGCACAGGCTCAGCACTTAATGCAGCAAATGCAGGCGGCCGCCATGTCGGCAGcaatgcaacagcagcaacaagtaGCACAGGCGCAACAGCAGGCACAGCAAGCGCAGCAGGCCCAACAGCATTTGCAGCAGCAGGCGCAGCAGCatctgcaacagcagcaacatctagcccagcaacaacatccacatcagcagcatcatcaaGCGGCCGCAGCAGCTGCCGCATTGCATCATCAGAGCATGCTTTTGACCTCGCCTGGACTTCCGCCACAGCATGCTATTAGCTTGCCACCTTCGGCCGGTGGAGCTCAACCAGGTGGTCCTGGCAATCAAGGAAGCTCCACTCCTTCGAACAGCGAAAAGAAACCCATGCTGATGCCAGTTCATGGCACCAATGCAATGAGAAGTCTACATCAGCACATGTCACCCACCGTTTATGAAATGGCCGCTCTAACCCAAGATCTGGACACCCACGACATCACCACCAAAATCAAGGAGGCTTTGCTAGCCAATAATATTGGCCAGAAGATATTTGGTGAAGCCGTTTTGGGTCTATCTCAGGGATCAGTGTCTGAACTTCTGAGCAAACCGAAACCCTGGCATATGCTTTCCATCAAGGGCAGGGAACCCTTCATACGGATGCAATTGTGGCTCAGCGATGCCAACAATGTTGAGCGATTGCAGTTGCTGAAGAACGAGCGAAGGGAGGCCAGCAAGCGAAGGAGAAGCACGGGTCCAAATCAACAGGATAACAGTAGCGATACCTCCAGCAATGATACCAATGACTTCTATACCAGCAGTCCGGGTCCAGGATCTGTCGGCTCGGGAGTCGGTGGTGCACCGCCAAGCAAAAAGCAACGTGTTCTCTTTTCCGAAGAACAAAAGGAGGCTCTCCGCTTGGCTTTCGCTTTAGATCCGTATCCAAATGTCGGCACCATCGAGTTTCTGGCTAATGAATTGGGTCTGGCAACACGAACGATCACCAATTGGTTCCACAATCATCGCATGCGTTTGAAGCAACAGGTTCCCCATGGACCTGCCGGTCAGGATAATCCGATACCAAGTCGCGAGAGTACCAGTGCCACGCCCTTCGATCCCGTCCAGTTTCGCATCCTGCTGCAGCAGCGTCTGCTTGAGCTGCACAAGGAGCGAATGGGTATGAGTGGTGCACCCATTCCATATCCACCCTACTTTGCTGCCGCTGCTATTTTGGGCCGCAGTCTAGCGGGGATTCCCGGTGCGGCAGCGGCCGCTGgggcagctgcagctgctgcagcagtcGGAGCCTCTGGCGGTGATGAGTTACAGGCCCTGAATCAAGCCTTCAAGGAGCAGATGAGCGGATTAGATCTGTCGATGCCCACTTTGAAGCGGGAACGCAGCGATGACTATCAGGATGATTTGGAACTCGAGGGCGGTGGCCAGAATCTAAGTGACAATGAATCTCTGGAGGGTCAGGAGCCCGAGGACAAGACCACCGATTATGAGAAAGTGCTGCACAAATCAGCTTTAGCCGCCGCCGCAGCTTACATGTCTAACGCGGTACGAAGCTCTCGACGAAAACCCGCTGCACCGCAGTGGGTCAATCCCGCCGGAGCAGTAACCAATCCAAGTGCCGTTGTTGCagcggttgcagcagcagctgctgcagcggcagACAATGAGCGTATAATCaatggcgtatgcgtgatgcAATCCTCCGAATACGGACGTGATGATGCTGATAGCAACAAGCCAACGGATGGTGGTAACGATTCCGATCATGAGCATGCCCAGCTGGAAATTGATCAGCGTTTCATGGAACCTGAGGTGCATATTAAACAGGAGGAGGACGACGATGAAGAGCAATCGGGATCGGGTAATCATCTAGATAACGAGGACAATACCAGCGATCAAAAACTGAAGGTGGTCAACGAAGAAAAGCTCCGAATGGTGCGAGTTCGACGATTGAGCAGCACTGGCGCTGCTTCCTCCGAGGAGATGCCCGCCCCATTGGCACCGCCAcccccagcaacagcaacagcatcaacTTCTTCCAGTGGTGACAGCACTTCGAGCATtaacagcagcagtggcaccaccaccaccagcaccacaCCGGCAGTAACCACCGGTGGAGCAACCAATGCAACCGGTTGGAATTACTAG
Protein Sequence
MQPTLPQAAGTADMDLTAVQSINDWFFKKEQIYLLAQFWQQRATLAEKEVNTLKEQLSTGNPDSNLNSDNSDTAAVEAVVAAATATNGIEEEQKQQQQQENDSEKLLTSSIVAAITLQQQNGSNLLANTNTPSPSPPLLSAEQQQQLQSSLQQSGGGVDGACLNPKLFFNHAQQMMMMEAAAAAAAAALQQQQQQQSPLHSPATEVALPTEQPAATVSGAATAAASASATAATSIASGIIRSGSNINHTNNSHQDEEEVDEEEEDDEEDEDDDDEEENVSMQSNADDMELDAQQETRTEPSATQQQQHDEDLKENKDAAEASLNVSNNHTTDSNNSCSRNNNNGGNESEQHVANSAEDDDCANNNTNTSNNNNTTNTATSNTNNNNNNSNNSSSGNSEKRKKKNNNGQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEVRLDKQQINEALAEATALAAAAASNNNNNSQSSDNNKKLNTTGVTPLDASSSIGDLPEMAKGPVPTEDEDDGEDQAMLVDSEEAEDKPEVPHHHDEVDDEEEDETEDREAVNATTTDSNELKIKKEQHSPLLSPQSAIAAAAAAAAAAACANDPNKFQALLIERTKALAAEALKNGASDTISEDAHHQQQQHHQQQQHHQQNHHQQQQHLHQQHHHHLQQQQNSGSNSNPATNDSLNHHHGHHLHSHALLHPSAAHHLHHQQNESSSNSSTPTAVGIMSNNNVGNNSTGNTNATSNATVQLAASLASSLNGNKSLLKEDSNGLAAAAMAAHAQHAAALGPGFLPGLPAFQFAAAQVAASGDGRGHYRFADSELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGDDSISEDRIAHILSEASSLMKQSNVAQHREQERRSHGGEDSHSNEDSKSPPQSCTSPFFKVEQQLKQHQHLTPDQAAAAQHREREREQREREQQQRLRHEDLAQDKMARLYQELIARTPRETAFPSFLFSPSLFGGAAGMPGAASNAFPAMADENMRHMLEREFAKLQQHQQQQQAAQAQAQFPNFSSLMALQQQVLNGAQDLSLAAAAAKDIKLNGQRSSLEHSAGSSSCSKDGERDDAYPSSLHCRKSEGSGTPAPPVPPSGQAGAGAPPTVVPQTGGASSNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLASKMQAASLPMQKMMSELKLQEPAQAQHLMQQMQAAAMSAAMQQQQQVAQAQQQAQQAQQAQQHLQQQAQQHLQQQQHLAQQQHPHQQHHQAAAAAAALHHQSMLLTSPGLPPQHAISLPPSAGGAQPGGPGNQGSSTPSNSEKKPMLMPVHGTNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPAGQDNPIPSRESTSATPFDPVQFRILLQQRLLELHKERMGMSGAPIPYPPYFAAAAILGRSLAGIPGAAAAAGAAAAAAAVGASGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDDLELEGGGQNLSDNESLEGQEPEDKTTDYEKVLHKSALAAAAAYMSNAVRSSRRKPAAPQWVNPAGAVTNPSAVVAAVAAAAAAAADNERIINGVCVMQSSEYGRDDADSNKPTDGGNDSDHEHAQLEIDQRFMEPEVHIKQEEDDDEEQSGSGNHLDNEDNTSDQKLKVVNEEKLRMVRVRRLSSTGAASSEEMPAPLAPPPPATATASTSSSGDSTSSINSSSGTTTTSTTPAVTTGGATNATGWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00539448;
90% Identity
iTF_00505307;
80% Identity
iTF_00505307;