Dequ018136.1
Basic Information
- Insect
- Drosophila equinoxialis
- Gene Symbol
- Trl
- Assembly
- GCA_018150345.1
- Location
- JAECWI010000267.1:1404068-1412312[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.017 3.2e+02 1.7 0.3 35 51 211 227 200 228 0.88 2 3 3.9e-44 7.5e-40 134.9 6.2 1 54 302 355 302 355 0.99 3 3 0.04 7.7e+02 0.4 0.5 4 23 356 375 356 381 0.74
Sequence Information
- Coding Sequence
- ATGTCGTTGCCAATGAATTCACTATATTCGCTCACTTGGGGCGATTATGGCACAAGTCTGGTATCGGCCATACAATTGTTGCGCTGCCATGGCGACCTTGTCGATTGCACTCTGGCAGCGGGTGGCCGTAGTTTTCCCGCCCATAAAATTGTCCTATGTGCCGCCTCGCCGTTTTTATTGGATTTGCTAAAGAACACACCATGCAAACATCCTGTAGTCATGTTGGCCGGCGTTAATGCGAATGACTTAGAAGCGCTTCTGGAATTTGTTTACCGTGGGGAAGTGAGTGTGGATCATGCTCAATTGCCATCGCTGTTGCAGGCAGCGCAGTGCTTGAACATTCAAGGCTTAGCTCCACAAACTGTCACCAAGGACGATTATACGACTCATTCAATACAATTACAACATATGATACCACAACACCATGACCAGGATCAATTGCTTGCAACTATTGCAACGGCCCCTCAACAGACTGTCCACGCCCAGGTTGTCGAGGATATTCATCATACGGGGCAAATTCTGCAGGCCACCACGCAGACGAATGCAGTCGGACAACAGCAAACCATTGTCACCACGGATGCAGCTAAACATGACCAGGCAGTGATACAGGCTTTTCTTCCAGCACGTAAACGTAAACCCCGTGGAAAAAGATGTCACCTACGGCTCCGAAAATCAGCAAAGTTGATGGCATGGACACAATTATGGGGACACCGACCTCTTCTCATTCAGCAGCTGGGGGTCAGCAAGTCCAGTGAGGGGCAAAAGGTAGAGACTATTGTCACTATGGATCCGAATAATATGATACCCGTTACGTCAGCAAATGCTACTACAGGCGAAATAACAACTGCAGCGGGAACGACGGTTACACCCAGTGCTGGTGGTAGTGGTACAACTACTTCCACCCCAAAGGCCAAGAGAACCAAACATCCGCCCGGTACAGAAAAACCACGATCACGCTCACAATCTGAACAACCTGCTACTTGCCCTATTTGTTATGCTGTAATACGTCAATCACGCAATCTACGTCGACATTTAGAGCTAAGGCATTTCGCCAAACCAGGTGTAAAGAAGGAAAAAAAAATACCCGGCAGCAAAAAGCCTGGAGGTACCTCAAGCGGTTCCCAATCGGGTGGGAATGGAACGCTAAGCTCTAGTGGTGGTGTTCCTCAAGTGCAGACTGTGCAATCGTTACATACCCTACAAGGTGTTCAAGATTTCGAGCAATTGGATTATGTTTAA
- Protein Sequence
- MSLPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHDQDQLLATIATAPQQTVHAQVVEDIHHTGQILQATTQTNAVGQQQTIVTTDAAKHDQAVIQAFLPARKRKPRGKRCHLRLRKSAKLMAWTQLWGHRPLLIQQLGVSKSSEGQKVETIVTMDPNNMIPVTSANATTGEITTAAGTTVTPSAGGSGTTTSTPKAKRTKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGVKKEKKIPGSKKPGGTSSGSQSGGNGTLSSSGGVPQVQTVQSLHTLQGVQDFEQLDYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555927;
- 90% Identity
- iTF_00503346;
- 80% Identity
- iTF_00503346;