Dequ011498.1
Basic Information
- Insect
- Drosophila equinoxialis
- Gene Symbol
- RREB1_1
- Assembly
- GCA_018150345.1
- Location
- JAECWI010000238.1:10493233-10499631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 2 9.2 0.8 1 21 99 119 99 121 0.93 2 13 0.00023 0.018 15.6 0.2 1 23 131 153 131 153 0.98 3 13 1.5 1.2e+02 3.6 2.9 1 14 159 172 159 175 0.89 4 13 2.6 2.1e+02 2.8 0.3 2 23 284 306 283 306 0.91 5 13 1.6 1.3e+02 3.4 6.2 2 19 312 329 312 331 0.97 6 13 8.4e-06 0.00067 20.1 0.7 1 23 516 538 516 538 0.99 7 13 0.00057 0.045 14.3 2.0 1 23 544 567 544 567 0.97 8 13 0.0041 0.33 11.6 0.8 1 21 738 758 738 759 0.94 9 13 5.9e-05 0.0047 17.4 0.3 2 23 1005 1026 1004 1026 0.97 10 13 0.099 7.9 7.3 6.3 1 23 1032 1055 1032 1055 0.97 11 13 8.4 6.7e+02 1.2 6.1 1 23 1191 1214 1191 1214 0.87 12 13 0.0058 0.46 11.1 0.5 3 23 1280 1300 1278 1300 0.96 13 13 0.00091 0.073 13.7 4.8 1 23 1306 1328 1306 1328 0.99
Sequence Information
- Coding Sequence
- ATGCTAGCAACAACAACAACATCCACTGATATGGAACGTCAACAAGATGCCGAGGAGGAGTCTGCACCAACAATTGCTAATGCTGCAGCCGCGCAGCAGCAACAGCAACGCCCACGCCATAAACAGCGACGCAACGGCTCTGTTGCCGCCGCTGCTAGCGCCAGCATTGTAATCGATGGCCCAGCCGATGCCAATTCACTTCGCAAAAAATTTCGCTTGAACCACAGCAATAGCAGCAGTCTAATCAATGGCCTTTGCATGTCATCGTCCAGTGCTGGCGATGAGCACATGAAATATCTATGCCCCATCTGTGAGGTTGTCTCGGCCACGCCCCATGAGTTTACCAATCACATCCGATGTCATAATTATGCCAATGGCGATACCGAAAATTTTACCTGTCGCATTTGCTCCAAGGTACTATCCTCAGCCTCATCTTTGGATAGGCATGTTCTGGTACATACAGGTGAACGACCCTTTAATTGTCGCTACTGCCACCTGACATTTACCACAAATGAGTGCATCAAGGAAGAGCAAATGGATGTGGAGGATGAGCAAGTAGATGGAGAAGCAGCTGTCGTAATGGACGAATTGCCGATATTAAAACAAAAACGTCGTCTAAAGACGACAATTAATAATAATAATATAATAAACGATGATCACGATGATGACGATGCAGCGGCAGGTCGTGATGAACTGGATGCCGATGGAGAGGTGGATGATGATGAGGATGAAGCCGATATTGATGGCGATCGGCAAACAGAAGTGGAAGTATCTATCACTAGTACACCAGATGTTGCCGCTCTTTTGGCTGGCGCCTCGAGATCAGCATCACCCACAACTCCATTGATAAGTTGTCCCGTCTGTTTATCTGAATTCGAATCCCTGCCCACTTTATGTGAACATTTGGATCAACAGCATTCCGATATATTGGCCAAATGTCGTGAGTGTGAGGTCATCTTTTCGAGTCACAAGCAACTGCAGAAACATTGCTGTCGCGGTGGTTCTTCGTCCAGTGGTTTGCCGCCCCTCCTAAGAGCGAGCAGCTCACCATTGCATGGCGAGCAAGAGGATGACGACGATGTCGACCGTGATGACGATGATCGAGAGATGAGACGTGCTGGCGTGGACACAGACCTTCGCGATGAAGTCAAGGTGGAAAAGGAAGCCGAAGCCGAGGCCAAACAGCGTGACGATTTCTTTCATCATTTGTATTTGAAGAGCAAAACCGAACATGCCCATATGTCCGAGGACAACAATGAGTTGGCCACGTCGCCACCATCGCCCATAAAGCATGAGCCAAATGATAGCAAAGATTTGGCCGATATACAAAGCATCCTGAACATGACCAGTTCGAGTTGTACATCTAGTTTTCTGCGCAACTTTGAGCAATCGGTCAATACTCCATGCTCGTCGAGTCAATACAGTCTGGATGGTCGGGATCAGGAGGAGGAGGCCCAAGACGTCTTCACCTCGGAGTTCCGTCGCATGAAATTGCGTGGCGAATTCCCCCTGCAAACTGTGTGCGGCATTGGACCCGCTGGTCCCTTCCGTTGCAACATGTGTCCCTATGCCGTGTGCGACAAGGCCGCCTTGGTGCGCCACATGCGTACTCATAATGGGGATCGTCCGTATGAGTGTGCCGTCTGCAATTATGCTTTCACTACCAAGGCCAATTGTGAGCGCCATTTGAGGAATCGTCATGGCAAAACCAGTCGTGAGGATGTCAAACGTGCCATTGTCTACCATCCGGCCGAGGATGCCAGTTGTGGTGAGGGTGAGGGTAAATTGCGTTTAAATGACACCGATGAGAGTTATCGTTCGGCATCGCCGCCACCGCTGGAGGGGACTGCTGCCTCCCAATTGAAGCATATGCTGATGAACGATGGCCCAGGAGTGACGCAAAGTGTGCAACCGCCACCACTTAAGATCCAGGTAAAGAGCCTGGATCAGTTGGTGGAGAAGCAAACACCCGCCATTAAGGCGACACCATCGCCAGCAGCAACTCCGCCGCCACCGTCAACTTCATCGACTGGATCAGCCGTTGGAGAGAAATTGCCACCGTCAAGTGCCATGCAGCAGCAGCAGCAACAACAAATGAGCCCCTCGAGCAATCGTCTATCCCTGCTGCCCGGTGGACCAGTCAAAATGGTCATCAAGAATGGAGTTCTAATGCCCAAGCAGAAGCAACGTCGCTATCGCACCGAACGTCCCTTTGCCTGTGAGCATTGCTCGGCAAGATTTACCTTGCGTTCGAATATGGAGCGACATGTGAAATATGCCATATTGGCCCAACAATTGAAGGCACACAAGAATACGGATTTGCTGCAACAGGCTTTGGCCCATGGATCGAGCAGTGTGGCAGCAGCAGCGGCAGCTTCTTCTCACTTGATTAACTTCAATTATGCCTTGGCCAATGGAAATGGGAATGTCAATGGCAACACAGCAGCTCACGATGTGGATATGGATAAAAAGCTGGTGGTAATTGTGGATGATGAGCAGCAATCGCATGGCAAAGATTTGCCACAAACCATTGAGAACATGGCCAGCAACGAGGCAGCCAAAAAGGTGGCTGAAACCATTTTAGAGCAGGCCATCAAAGCTGGCAAACCAATAACCCATGAAGTGGAACCAACTTCCACTACAGTTGCCAGTAGCCATCAGCCGCCATCCTCAATGAAGTCGATGATTGCTCAAGTTGAGTCTGTGGCCAAGTCGCTGAAAGATGTGGCCAGTTCACCATTCAATAAAGATGAATCTCCACTCTCCGATTTGGTGCCGGTGTCCAAGCTAGTGGACAATGCCACAAGCAATCAATCGATGCAAAGTTTCACCAGTTATTTTCGTCCCAGCGATGTGGCCAATCACATGGAGCAGAGCGACGAGGAGGGTCTCGTTGCCTCGGGCAGTGCCAGTGAGAGTAATAACTCCGGCACCGAAGATGTCACCAGCAGCAGTAGCAGTGGGCAAGAGCCCAAAAAGAAATCCGCCTACAGTCTGGCCCCCAATCGTGTCTCGTGTCCCTATTGCCAGCGTATGTTCCCCTGGAGCAGTTCCCTGAGACGGCACATTTTGACCCACACCGGGCAGAAGCCATTCAAATGCTCTCACTGCCCATTACTCTTTACCACCAAGAGCAATTGTGATCGTCATTTGTTGAGGAAGCATGGCAATGTCGAATCGGCCATGTCCGTGTATGTGCCCACCGAGGATGTCAGCGAACCGATACCAGTGCCCAAATCAGTGGAAGAAATTGAATTGGAGGAACAACGCAAACGTCAAGAGGCCGACCGCGAGAAGGCCGAATTGGAACGAGAACGCGAGCGAGAGCGTGAACTTGAGCGTGAGCGGGAACGTGAAAGGCAATTGCAGCAAGAGAGGGAAAAGGAGCTAGAACGTGAGCGAGAATTGGAATTGGAGCGAGAGCAGCAGTTAATGCAACAATTGGCTGCCGCTGCTCAATTAACTCAGCAAATGGCCGTGGCTGCCTCCTCGTCGGCAGCAGCAGCAGCCGCTGCAGCCGTGGCTGCCGCAACTTCAGCGAGTAACGAGTTGGCCAATGGCGATTTGCCCTTCAAGTGCCATCTGTGTGAGTGTTCGTTTAGCGAGCGTTTACAGTGCTTGGATCACATCAAGCAAGCGCATGCCCATGAATTTGCTTTGCTTTTGGCCAAGGGAGCTATCGAAACGGAAGAACCCACCCAGGGAGCAAACGCAACAGCGACGGCGACAGTGCAGCCAACAGCTCCCCAATCCGATGATGAAGGATCTTTGGGTATGGCCGGCAATGGTCGTGGTGGTTCTGGTAAATATCCCGATTATAGCAATCGCAAAGTGATTTGCGCTTTTTGTGTTCGTCGCTTCTGGTCCACTGAGGATTTGCGTCGTCATATGCGTACCCATTCGGGCGAGAGGCCATTTCAGTGTGAGATTTGTCTGCGTAAATTCACATTGAAACATAGCATGTTGCGGCACATGAAGAAGCATAGTGGACGTTCCCATAATGCTGGTGAGATGCAAGGTGGTTCCGATTGTTCGGATGATGAGCAAATTATGACAACAGCAACAACAACCACACCGCCATCTACACCTCTGCCCAATAATAACAATAACAATTGTCACACCAACAACAATAATACAAACAACAACAACAATAATAATAACACAAACAATAATAACAATAAATTGGGAATACGTCTACCAAAATTGCATGAGCTACTGGACAAGGCGAACGAGTGGCGGGCCAGTCGGTTGGGCGAGCACAAAGAGAATTTGGGCGAGCAACAACACCGTGCAACAACACCTGGAGCAACTCCATCTGCTGTGGCTGGTTCAACAGATCTCATTGGCAATCTATTGGGCATCAGCGATCAGGGTATATTGAATAAATTGCTCTCGTCCGCCGATGAGGCAGCCAAATTTCTGGGAGTGGACAAGTAA
- Protein Sequence
- MLATTTTSTDMERQQDAEEESAPTIANAAAAQQQQQRPRHKQRRNGSVAAAASASIVIDGPADANSLRKKFRLNHSNSSSLINGLCMSSSSAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNECIKEEQMDVEDEQVDGEAAVVMDELPILKQKRRLKTTINNNNIINDDHDDDDAAAGRDELDADGEVDDDEDEADIDGDRQTEVEVSITSTPDVAALLAGASRSASPTTPLISCPVCLSEFESLPTLCEHLDQQHSDILAKCRECEVIFSSHKQLQKHCCRGGSSSSGLPPLLRASSSPLHGEQEDDDDVDRDDDDREMRRAGVDTDLRDEVKVEKEAEAEAKQRDDFFHHLYLKSKTEHAHMSEDNNELATSPPSPIKHEPNDSKDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSSQYSLDGRDQEEEAQDVFTSEFRRMKLRGEFPLQTVCGIGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREDVKRAIVYHPAEDASCGEGEGKLRLNDTDESYRSASPPPLEGTAASQLKHMLMNDGPGVTQSVQPPPLKIQVKSLDQLVEKQTPAIKATPSPAATPPPPSTSSTGSAVGEKLPPSSAMQQQQQQQMSPSSNRLSLLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKYAILAQQLKAHKNTDLLQQALAHGSSSVAAAAAASSHLINFNYALANGNGNVNGNTAAHDVDMDKKLVVIVDDEQQSHGKDLPQTIENMASNEAAKKVAETILEQAIKAGKPITHEVEPTSTTVASSHQPPSSMKSMIAQVESVAKSLKDVASSPFNKDESPLSDLVPVSKLVDNATSNQSMQSFTSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSGQEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRKRQEADREKAELERERERERELERERERERQLQQEREKELERERELELEREQQLMQQLAAAAQLTQQMAVAASSSAAAAAAAAVAAATSASNELANGDLPFKCHLCECSFSERLQCLDHIKQAHAHEFALLLAKGAIETEEPTQGANATATATVQPTAPQSDDEGSLGMAGNGRGGSGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNAGEMQGGSDCSDDEQIMTTATTTTPPSTPLPNNNNNNCHTNNNNTNNNNNNNNTNNNNNKLGIRLPKLHELLDKANEWRASRLGEHKENLGEQQHRATTPGATPSAVAGSTDLIGNLLGISDQGILNKLLSSADEAAKFLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00523913;
- 90% Identity
- -
- 80% Identity
- -