Dequ007727.1
Basic Information
- Insect
- Drosophila equinoxialis
- Gene Symbol
- -
- Assembly
- GCA_018150345.1
- Location
- JAECWI010000001.1:7247513-7249715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.02 1.6 9.4 0.2 1 23 284 307 284 307 0.97 2 10 1.3 1.1e+02 3.7 0.2 6 23 317 334 317 334 0.97 3 10 0.0021 0.17 12.5 0.3 1 23 340 362 340 362 0.97 4 10 0.00021 0.017 15.7 0.7 1 20 385 404 385 408 0.87 5 10 0.00018 0.014 15.9 0.7 1 23 416 439 416 439 0.97 6 10 3.4e-05 0.0027 18.2 1.6 3 23 447 468 445 468 0.92 7 10 0.0011 0.087 13.4 0.4 2 23 480 502 479 502 0.97 8 10 0.00056 0.045 14.3 7.1 1 23 509 532 509 532 0.93 9 10 2.4e-06 0.0002 21.8 0.8 1 23 538 560 538 560 0.98 10 10 6.9e-05 0.0055 17.2 1.3 1 23 566 589 566 589 0.97
Sequence Information
- Coding Sequence
- ATGGTGGCCTGTGTTCTTTGTTTGAGTCACTGCTCAACTGAGACGGCACTAGGCCTGTCCTCGGTGGAGGGATTGCGGCTAAACGTTCGTGCGAAAATTAGCAAACATTTTTTGTTTCTTGATTTACCCCAATCAGAGGGCAGCTCCACCAAATCTTTGGAGATAATATGCCAGGAGTGCTGGCAGATTGTACGCTCCTTTAATGAGTTCTACGATCGAGTGTTTAAATTGCATCAACATCGGAGCGGAGATGTGGAGTTTTGTGACGAAAGTACTGCAGTTAATCCCTTATATGCAGTCGAATTGGATGCATTGGCCGAGGAGGGATTCTTTGCGCCGAACGAAATTAAAGTGGAGGTCAATGAGCTGGAACCACTGGCCAAAATGGAAGTGGACACAGAACTAGAGGAGGATCCAGTGGATACGAAGGAAAAGAAACAGCTGCTGGCCAGCGATTCAGATGGCGATCGTCCATTGGCCGAACTCCTGTCCATAGCTACTGAAGCAGCCCCCGAAGGCCAAATGAAAAAGGAATTTGAGTCGGATGACGATGCCAACGATATGGATTTTGTTGCTGCCGAAGCTGTTTTAGGAACCGATGATTCCGCTAGCTCCTCTGATGAAGATGACAACTCCAGTCGCATTCATTCGGATGGTGACTCCTTGCCAGACATTGAACCCGAGGAGCGTTATGCGGAAATTCCTAAACGAGTGGTAGTCAAGCCCAAAAAGTATCGCAAACGTCCAAAACCCGTGGTTCCACCAGTCCGCCTCAGCCGTGAGGAGATCGAGCGGCGCAAGGAACAGCAGAATGAATATGATGAGATAATATTGTCATTCTTCAAGAAATTCCCCTGTGACATTTGTAATTTGCTTGTACAGAATTTTGCAGACATGCGACGCCATCAGCGCATGTCGCACAATATTGAATCGGGCTACATTAATTGCTGTGGACGCAAATTTCACATACGCAAGGCGCTGGCCGAGCATGTGTTAGTTCATAGAAATCCAGATCATTTTATGTGTTCCCAATGTGGACGAGTTTTGCAGGATTCACGCACATTGGAATTGCACGAACAATCCCATTCGACGGAAGCAGATGGCACGGGTTCGGGCACTGGGATTGGGGGAGAAACCAAGGAGAAACGAACCTATCAATGCGAAAAATGTCCAAAAAGTTTTACTACAAAGGCGGCCATTGAGTATCATAATGTGTCCAAGCATGTGCCCAAATCAGAGTTTAAATTCACTTGCCCCGAGTGCAATAAAAAAATTCCCACGGAACGTAAACTGAAGGAACATTTGCGTTATATGCATGATCCAGAAACCGCCATTATATGCGATAAGTGTGGAAAAACTCTACGCTCACAAACGAATCTCAAGAAGCATCACGAGCTCGAACATTCCGATGAGCCGCGTCCCAAACCGGATCCAGTGCAATGTGAAATTTGTGGGACATGGCTGCGACATCTCTCGGGGCTGAAGCAGCATATGAATACGGTGCATGAGCCACCGGGTGGAGAGCATCGCTGTCATATATGCAATAAGACATCCACCAATTCGCGTGCCCTCAAGCGTCACATCTATCACAATCATTTGTGCGAAAGGAAGTTCAAGTGCGGCATGTGCGAAAAGGCATTTAAGCGTCCACAGGACTTGAGGGAACACACGTCAACGCACACCGGTGAAGTGCTATACACCTGTCCCAATTGCCCCATGACATTCTTTTCAAACGCCAACATGTACAAGCATCGCCAGCGTTTGCATCGCGCTGAATGGGAAGCCGATCGCAAGAAGCCATTGCCGCCAAATATTATGAAAATCTCACAAGGGGCTACGACGGCGATGAAGAAACGTCAAGCAGCAGCAGCTGGTCTTTTTCCTCAAATGGATGGCATAGCTGTAGCCTCTTCTACTCCTCCTCCTCCACCTGCTCCTCCCTCAGTCCAGTAG
- Protein Sequence
- MVACVLCLSHCSTETALGLSSVEGLRLNVRAKISKHFLFLDLPQSEGSSTKSLEIICQECWQIVRSFNEFYDRVFKLHQHRSGDVEFCDESTAVNPLYAVELDALAEEGFFAPNEIKVEVNELEPLAKMEVDTELEEDPVDTKEKKQLLASDSDGDRPLAELLSIATEAAPEGQMKKEFESDDDANDMDFVAAEAVLGTDDSASSSDEDDNSSRIHSDGDSLPDIEPEERYAEIPKRVVVKPKKYRKRPKPVVPPVRLSREEIERRKEQQNEYDEIILSFFKKFPCDICNLLVQNFADMRRHQRMSHNIESGYINCCGRKFHIRKALAEHVLVHRNPDHFMCSQCGRVLQDSRTLELHEQSHSTEADGTGSGTGIGGETKEKRTYQCEKCPKSFTTKAAIEYHNVSKHVPKSEFKFTCPECNKKIPTERKLKEHLRYMHDPETAIICDKCGKTLRSQTNLKKHHELEHSDEPRPKPDPVQCEICGTWLRHLSGLKQHMNTVHEPPGGEHRCHICNKTSTNSRALKRHIYHNHLCERKFKCGMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMKISQGATTAMKKRQAAAAGLFPQMDGIAVASSTPPPPPAPPSVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00591152; iTF_00501255; iTF_00577975; iTF_00483902; iTF_00600507; iTF_00556024; iTF_00571358; iTF_00523883; iTF_00618607; iTF_00612264; iTF_00555287; iTF_00604292;
- 90% Identity
- iTF_00571358;
- 80% Identity
- -