Dequ009692.1
Basic Information
- Insect
- Drosophila equinoxialis
- Gene Symbol
- -
- Assembly
- GCA_018150345.1
- Location
- JAECWI010000562.1:5182679-5185730[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 0.9 10.2 3.8 1 23 177 200 177 200 0.97 2 15 0.013 1 10.0 1.0 1 23 229 252 229 252 0.97 3 15 0.00054 0.043 14.4 3.3 1 23 301 324 301 324 0.96 4 15 0.0052 0.42 11.3 0.6 2 23 378 399 377 399 0.97 5 15 5.2 4.1e+02 1.8 1.5 1 20 517 536 517 538 0.87 6 15 0.0094 0.75 10.5 1.2 1 23 547 569 547 569 0.94 7 15 9.4e-05 0.0075 16.8 1.1 1 23 576 599 576 599 0.96 8 15 0.00028 0.023 15.3 1.0 3 23 609 629 607 629 0.96 9 15 0.0038 0.3 11.7 1.1 1 23 678 701 678 701 0.96 10 15 3.5 2.8e+02 2.4 1.7 1 22 708 729 708 729 0.93 11 15 0.007 0.56 10.9 0.6 1 23 738 761 738 761 0.95 12 15 1.4e-05 0.0011 19.4 0.5 1 23 786 809 786 809 0.97 13 15 0.033 2.6 8.8 0.2 1 23 819 841 819 841 0.94 14 15 2.1e-05 0.0017 18.8 3.3 1 23 847 869 847 869 0.99 15 15 7e-06 0.00056 20.3 3.6 1 23 875 897 875 897 0.98
Sequence Information
- Coding Sequence
- ATGACAAGGATTTGCCGTGTCTGCGCTGGCCCTGATGGGCGATTTAGGATGGAGACTCCTGTTGAGAAATATGCAGGCAAAACGTTCAGTCAATTGCTAATCGATTTGACCAAAATTGAGATCACTGCTGTCCAGATGGAGAAGTTGACGTCCTGGATATGCCGTAATTGTGCCCATAAATTGCAGCATTCCTATGATTTTGTGTCGAAGGCTAAGAGAACACATGCAATGTGGTTGGAAAAAATGTCCGATGATCCTATCTGTTTGCGTGAGACTCCCATACATTTATTGGAGATTGAAGGGGTAACCATTAAAATGGAAGATGTGGAACCAACTGTACCTACAGCAGTTCCCTGCTCTGTTCCCGATCCTCTAGTGCGTATAGGCGTCGAAAAGCGTTGCATATCTGATTTAAGCGACGATCCCAGTGCAGATGATCATTATGACTTTGATGATGATGAGGATGATGTTCCTCTAAAGCAGCGATCTGACATGAAGAAGTCTCAGGCTTTTGACAAATTGAAGAAGCATAAATGTAATCAATGTATTAAAGCCTTTAAATATATCACAAACCTCTACCGGCACAAGCAAACGGTGCACAATATCGATAAGGATATTAAAAAAAGTGTAAGGAAACTAGCACCAAATCGAGAGGAACTAAATGAAAACGAGGATGACAACTATTATAAATGCGATCAGTGTGATAACTCCTACAAGTATGTTATGCTTCTAGTCCAGCACAAGCAAAAGGTTCATGGAGTCCATCAACTGCCCTCTAGTCGAGGGCAAAGGGCAGCCCCTCAGCAGAAACCCAAACTGAATACTGACATGCTGGTGCATAGTCTTCTCAAAGCAGTGGAAATCTCAGATGAAGATGGCAGTTCCGATTCGGATAATTACTACAAATGCGATCAATGTGACAAATCCTATAAATACATTGTTAGTCTCATCAAGCACAAGCATAAGGAACATACAGAAAACTCTAGAGATTCGAACGACGGCGATGATCAAATCCAGGCCTCCACATCCAACTCTGCTAGCATCGGTGGTCCTCTAAAGACTTCTCGTATCAATAGGCGTGTTCAGGACTTTGACCCTCTACGTTGTCAACCAAATGGTTCTAAGGAGATTAAATGCATGATCTGCTTACGTCGTTTTGCCAAATTGGGTGAACTGCGTTATCATTTGAAATACCACCCAGATGACTTTAATTTTGATGCTCACGGCGAGCCTATTGAACGTATAGCTGAGGGCTTCTTCAAGACGGCCGTTGAATCGACAGCAGAGGGTCTAAAGCGACGCATTGTTAAGGATCTTAACATGGGCTTATATGGTCGTTACTACTCTATTACAAACGAGGCACACTATGAATTGAGTCTAGATAGCTCCGATACAGATAGCGATGGAGGTGATGCCGATGCCCAGGTGATCATCCGGCGGAGTTATGCATGTGAATTGTGTAATACCTCCAACCAGACGGCTGTCTGGCCCCGCAAATATCAACTTCATGATCATCATAGGCAATGTCACACGTGGATGGAGGCTCCCCATGTCTGTCAGCGTTGCGACTCGCGCTTCTTGAGTGAAAAACTTCTAGAACATCACACTAGTCAGCTTTGTAATAATACCTTGAAACGTTACCAATGTGACAAATGTCCACAGCGTTTCTTTTGGCGTAAGAATTTGCGCTCTCACTTGGTGGATCATAAAGATAAGCAAGAAAATTATCCCTGCGATCAATGTCAGCGTAGTTTTCAGGACAAAAGTTCTGTGACGAGGCATAAATTAATGATGCATGCAGATGGAAAGAGTCAACTTATAGCTTGCCGTTGGTGCACTCGGGTTTTCTACCGACCAGCACTGCTTCATAAGCATCTCCAACGCCATGGTTTCAACTTGCGTGGTCACATGGCTATGTCGGAGCACGATACTCAGGTTTCCAATTATATGATCAGTACTGAAGCTGGATTTGAACTGCAACTGGATGATACAGATGATAGCGACGATGATGATGGCCATACAAGACGATCCTACACATGTGATCTCTGTCAAATGAAATTCCCACGCAGACGTGAAATGAGTGAGCATCAATACTCGTTGCATACGTTTGATAAACTGCCACATACATGCGATCAATGTATATACAAAACTGTGGATAAGCTTATGTTGAAACATCATCAACTGACTCAATGCCAAAACAAAGAGAAGAAATTTATTTGCACGCAATGTGGTTACCGCTTCATGTGGCAAGAGAATCTCGACAAGCACTTGTCCAGCCAGCATCCGAAACAAAAAACAAGCAGCTTCGATCCACAGACCCCAAGTTCTTCTATACGTCGAAAAAGACGCTTCAGATACCAATGTCCCCACTGTTGGCGCTCTTTTGTTGTTCAGCCCAGCTTGGATAAGCACATTCGAGATATGCATGTGGCTAAAAAGAATCCGGGCAAGAAATATCTCTGTTCGCTCTGCGGACTGGAATCCCTTACACCCAATAAATTAAATATTCATATGCGTCGCCATATGGGGGAAAAACCCTTCAAATGTGATCTCTGTGATATGAGTTTTACGGTTCATTACGAACTAAAAGTGCACAGAAGAAAGCACACAGGCGAACGTCCTTATAAATGTACATTCTGTGACAAACATTTCGCTCGGCCCGACAAACTGAGACGTCATGTCTATATGCACAGCGATAAGCGTTAG
- Protein Sequence
- MTRICRVCAGPDGRFRMETPVEKYAGKTFSQLLIDLTKIEITAVQMEKLTSWICRNCAHKLQHSYDFVSKAKRTHAMWLEKMSDDPICLRETPIHLLEIEGVTIKMEDVEPTVPTAVPCSVPDPLVRIGVEKRCISDLSDDPSADDHYDFDDDEDDVPLKQRSDMKKSQAFDKLKKHKCNQCIKAFKYITNLYRHKQTVHNIDKDIKKSVRKLAPNREELNENEDDNYYKCDQCDNSYKYVMLLVQHKQKVHGVHQLPSSRGQRAAPQQKPKLNTDMLVHSLLKAVEISDEDGSSDSDNYYKCDQCDKSYKYIVSLIKHKHKEHTENSRDSNDGDDQIQASTSNSASIGGPLKTSRINRRVQDFDPLRCQPNGSKEIKCMICLRRFAKLGELRYHLKYHPDDFNFDAHGEPIERIAEGFFKTAVESTAEGLKRRIVKDLNMGLYGRYYSITNEAHYELSLDSSDTDSDGGDADAQVIIRRSYACELCNTSNQTAVWPRKYQLHDHHRQCHTWMEAPHVCQRCDSRFLSEKLLEHHTSQLCNNTLKRYQCDKCPQRFFWRKNLRSHLVDHKDKQENYPCDQCQRSFQDKSSVTRHKLMMHADGKSQLIACRWCTRVFYRPALLHKHLQRHGFNLRGHMAMSEHDTQVSNYMISTEAGFELQLDDTDDSDDDDGHTRRSYTCDLCQMKFPRRREMSEHQYSLHTFDKLPHTCDQCIYKTVDKLMLKHHQLTQCQNKEKKFICTQCGYRFMWQENLDKHLSSQHPKQKTSSFDPQTPSSSIRRKRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYKCTFCDKHFARPDKLRRHVYMHSDKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00523880;
- 90% Identity
- -
- 80% Identity
- -