Deoh009910.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila eohydei
Gene Symbol
Ssrp
Assembly
GCA_035045825.1
Location
JAWNOT010000072.1:16038417-16040767[-]

Transcription Factor Domain

TF Family
HMG
Domain
HMG_box domain
PFAM
PF00505
TF Group
Other Alpha-Helix Group
Description
High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.3e-26 4.2e-23 81.6 3.2 1 69 560 626 560 626 0.99

Sequence Information

Coding Sequence
ATGGTAGATGCTTTGGAGTACAATGACATAAATGCCGAAGTGCGCGGTGTTTTGTCTTCGGGACGCCTGAAGCTCACCGAACAGAACATCATATTCAAGAACACGAAGACGGGCAAAGTTGAGCAGATTGCCGCTGATGACATCGATCTCATCAATTCTCAAAAGTTCGTTGGCACCTGGGGCCTGCGTATATTTACGAAGAGCGGAGCATTGCACCGCTTTAGTGGATTTCGGGACAGCGAACATGAGAAGCTTGGCAAGTATATCAAGGAAGCCTATTCGCAGGAAATGGTGGAGAAGGAGATGTGTGTCAAGGGCTGGAACTGGGGCACAGCACGTTTCATGGGCTCTGTGCTAAGCTTCGACAAGGATACAAAAACCATTTTTGAAGTGCCCTTGTCACATGTTTCACAATGCGTCACGGGCAAGAATGAGGTCACACTGGAATTTCATCAGAACGATGATGCGCCTGTGGGTTTGCTTGAAATGCGCTTCCACATACCAGCTGTCGAGTCAGCGGATGAGGATCCTGTCGACAAATTCCATCAAAATGTTATGAACAAGGCGTCGGTCATATCGGCATCTGGCGAGTCCATTGCCATATTCCGTGAAATACACATTCTGACGCCGCGTGGTCGATACGACATCAAAATCTTCTCCACCTTCTTCCAGCTGCACGGCAAGACATTCGACTACAAAATTCCAATGGACTCAGTGCTGCGTCTGTTCATGCTGCCGCACAAGGATAGTCGCCAAATGTTTTTCGTGCTCTCGCTGGATCCGCCCATTAAGCAAGGTCAGACACGCTATCATTACCTTGTGCTACTCTTTGCTCCCGATGAGGAGACCACCATTGAGTTGCCATTCAGCGAGGCGGAACTGCGCGACAAGTATGAAGGCAAACTGGAGAAGGAGCTGTCTGGGCCGGTCTATGAGGTCATGGGCAAGGTGATGAAGGTGCTGATTGGACGCAAGATAACAGGTCCGGGCAATTTTATTGGGCATTCTGGAACCGCTGCAGTTGGCTGTTCATTCAAAGCTGCTGCCGGCTATTTGTATCCGCTGGAGCGCGGCTTTATCTACATACACAAGCCGCCACTGCACATACGTTTTGAGGAGATTAGTTCAGTGAACTTCGCGCGCAGCGGCGGCTCGACGCGCTCCTTTGACTTTGAGGTCACTCTCAAAAATGGCACTGTGCACATCTTCTCCTCCATTGAGAAGGAGGAGTATGCCAAGCTGTTTGACTTCATCACACAAAAGAAGCTGCATGTGAGCAACATGGGCAAGGACAAGAGTGGCTATAAGGATGTTGACTTTGGCGATTCTGACAATGAAAACGAACCGGATGCCTATCTGGCACGACTGAAGGCAGAGGCACGCGAAAAGGAGGAGGACGACGATGATGGCGACGATTCCGATGAGGAGTCCACGGATGAGGACTTCAAGCCCAACGAAAACGAGTCGGATGTAGCCGAGGAGTACGACAGTAATGTGCAGAGCGACTCGGACGATGATAGCGATGccagtggcggcggcggtggcggtggcgacAGCGATGGAGCCGCCAAGAAGAAAcacaaagaaaagaaacgcgaaaagaaggagaaaaaagagaagaaacaCAAAGAAAAGGAGCGCACAAAAAAGACCACCAAGAAGAAGGACAGCGGAAAACCGAAGCGTCCCACGACAGCTTTTATGTTGTGGCTAAACGATACGCGTGAACAGATCAAGCGCGATAATCCAGGAATAAAGGTAACAGAAATCGCTAAGAAGGGCGGCGAGATGTGGAAGGAGTTGAAGGACAAATCCAAGTGGGAAGAGATAGCCAGTAAGGACAAGCAGCGCTATCAAGATGAGATGCGCAATTACAAACCAGGTTCCGGTGCAGATGCTGGCAGCGACGACGAAGAAGCCCCCAGCAGCAAAGCTCCAAAGAAACGCATCTCTGAACCGTCACCTACGAAAAAGTCAAATACCTCGGGCAGCGGCTTTAAGAGCAAGGAATACATATCTGAAGATGATTCCACCAGCTCGGATGATGGCAAAAAGTCCGGCAATGAGCCAGCCAAAAAGAAGAGCAAATCAAATGATGCAACATCGAAAAAGAAGGCCAAAAAGAGCGAAAGCGAAGCTGAGGCCACCGATGAGGAGAGCAACGATTCtaatgatgatgaggatgaagccagtgattaa
Protein Sequence
MVDALEYNDINAEVRGVLSSGRLKLTEQNIIFKNTKTGKVEQIAADDIDLINSQKFVGTWGLRIFTKSGALHRFSGFRDSEHEKLGKYIKEAYSQEMVEKEMCVKGWNWGTARFMGSVLSFDKDTKTIFEVPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESADEDPVDKFHQNVMNKASVISASGESIAIFREIHILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEGKLEKELSGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGFIYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDFITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDDSDEESTDEDFKPNENESDVAEEYDSNVQSDSDDDSDASGGGGGGGDSDGAAKKKHKEKKREKKEKKEKKHKEKERTKKTTKKKDSGKPKRPTTAFMLWLNDTREQIKRDNPGIKVTEIAKKGGEMWKELKDKSKWEEIASKDKQRYQDEMRNYKPGSGADAGSDDEEAPSSKAPKKRISEPSPTKKSNTSGSGFKSKEYISEDDSTSSDDGKKSGNEPAKKKSKSNDATSKKKAKKSESEAEATDEESNDSNDDEDEASD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01553933;
90% Identity
iTF_00519887; iTF_00551553; iTF_00516226; iTF_00528771; iTF_00473028; iTF_00587364; iTF_00562439; iTF_00563144; iTF_00475186; iTF_00584392; iTF_00530921; iTF_00534547; iTF_00490747; iTF_00589514; iTF_00585163; iTF_00493612; iTF_01553196; iTF_01557530; iTF_00472333; iTF_00614154; iTF_00509070; iTF_00520599; iTF_00510509; iTF_01553933; iTF_00478689; iTF_00499553; iTF_00598849; iTF_00564618; iTF_00501771; iTF_00553004; iTF_01556801; iTF_01550247; iTF_01555382; iTF_00574018; iTF_00619810; iTF_00558630; iTF_00560230; iTF_00521320; iTF_00566760; iTF_00495081; iTF_00497354; iTF_00593069; iTF_00528015; iTF_00496566; iTF_00607036; iTF_00609852; iTF_01549540; iTF_00616869; iTF_00573286; iTF_00916198; iTF_01552423; iTF_00518408; iTF_00577031; iTF_00537482; iTF_00595914; iTF_01554667; iTF_00506829; iTF_00522926; iTF_00540334; iTF_00585934; iTF_00512687; iTF_00552271; iTF_00595215; iTF_01559727; iTF_00504656; iTF_00619120; iTF_00476593; iTF_00513426; iTF_00597330; iTF_01551699; iTF_00500276; iTF_00591668; iTF_00572566; iTF_00498840; iTF_00557880; iTF_01548824; iTF_00608409; iTF_01550969; iTF_01559002; iTF_00570363; iTF_00568220; iTF_00601757; iTF_00516958; iTF_00583646; iTF_00805151; iTF_00559456; iTF_01324864; iTF_01325632; iTF_00554351; iTF_00803567; iTF_00509784; iTF_00568944; iTF_00582224; iTF_01323344; iTF_00556497; iTF_00553702; iTF_00495826; iTF_00567503; iTF_00530232; iTF_00547323; iTF_00588804; iTF_00598117; iTF_00561004; iTF_00541727; iTF_00526546; iTF_00579250; iTF_00532339; iTF_00470836; iTF_00533768; iTF_00545205; iTF_00544458; iTF_00586646; iTF_01558262; iTF_00519128; iTF_00479449; iTF_00549516; iTF_00610617; iTF_01556090; iTF_00546619; iTF_00599548; iTF_00802812; iTF_00508292; iTF_00575549; iTF_00901469; iTF_00832126; iTF_00506079;
80% Identity
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