Dema010778.1
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- -
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000221.1:6893369-6894137[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00012 1.4 9.4 0.0 24 45 73 94 58 100 0.86 2 4 0.00012 1.4 9.5 0.1 21 51 137 167 130 169 0.86 3 4 0.0015 18 5.9 0.1 21 44 165 188 163 192 0.89 4 4 9.9e-05 1.2 9.7 0.8 16 49 188 223 186 226 0.89
Sequence Information
- Coding Sequence
- ATGAAGGTGAAAAAGGAATTAAAGCCTTTTTCTCAATCTGTTAAAGTGGAGCCTATCGTCTATAATGCGGCCCTAGACACCGAGGAAGAGGATGAGATCAATCAATGCCAGCGGGAGCCCTACGAAATAGCAGATAGTGATCTTGACATTAAGTTGGAACACATAGACAGTCCTGATGAGCAAGAGGACAACGACTGTGAGAGGGAGAAGGGCTTCCCCTTTAAATGCGAATTCTGCTACAAATCATTTCGACACAAAAGAAACCTCTGTGAACATAACAAGATCCATAAGAATGGCGTTTTGGAAGATGAACTTTCTAACAGTGGAACGAATCGTCACAAGTGTCCCCATTGTCCATCATCTTTTGTAAGCAATGCCTATCTAACCAAGCATATACGCATCCATACTGGAGAACGTCCCTACAAGTGTCCTCATTGCACGTCCGCCTTTCGTGCCAGCGATGCTTTGAAATTACACGTACGCATACATACGGGAGAGAAACCCTTCAAGTGCCCTGATTGCTTAAAATCCTTTGCCGACAACCATAATCTACTAAGACATCGTCGTCGGCATACAAATGAAAGACCTTACAAGTGCCCCCATCTTGGTTGCTTCAAAGATTTCAGGGAGAAACATCATATGAAGCGGCATTTGCAAGGCAAGCACCACTTACACGGCGATGACCACGTTGTAGGATCTCCATGA
- Protein Sequence
- MKVKKELKPFSQSVKVEPIVYNAALDTEEEDEINQCQREPYEIADSDLDIKLEHIDSPDEQEDNDCEREKGFPFKCEFCYKSFRHKRNLCEHNKIHKNGVLEDELSNSGTNRHKCPHCPSSFVSNAYLTKHIRIHTGERPYKCPHCTSAFRASDALKLHVRIHTGEKPFKCPDCLKSFADNHNLLRHRRRHTNERPYKCPHLGCFKDFREKHHMKRHLQGKHHLHGDDHVVGSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00501313;
- 90% Identity
- iTF_00501313;
- 80% Identity
- iTF_00501313;