Dema010710.1
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- -
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000221.1:6323772-6326765[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.2 5.4e+02 1.8 2.5 3 17 61 75 60 76 0.88 2 14 6.7 5.8e+02 1.7 0.9 1 23 165 191 165 191 0.79 3 14 0.00092 0.081 13.8 0.1 1 23 197 220 197 220 0.97 4 14 6.8e-05 0.0059 17.4 3.7 1 23 225 248 225 248 0.96 5 14 4.6e-05 0.004 17.9 2.6 1 23 253 275 253 275 0.98 6 14 0.00024 0.021 15.6 5.6 2 23 282 303 281 303 0.97 7 14 0.00078 0.068 14.0 2.9 3 23 316 337 315 337 0.95 8 14 0.093 8.2 7.5 0.2 1 23 343 366 343 366 0.95 9 14 0.0097 0.85 10.6 0.7 2 23 377 399 376 399 0.95 10 14 0.00091 0.08 13.8 0.4 1 23 427 449 427 449 0.95 11 14 2e-05 0.0017 19.1 5.7 1 23 456 478 456 478 0.97 12 14 9.3e-05 0.0082 16.9 0.2 2 23 485 506 485 506 0.97 13 14 0.00052 0.045 14.6 0.8 1 23 513 535 513 535 0.99 14 14 0.00024 0.021 15.6 2.4 1 23 541 564 541 564 0.97
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGCTTTCCATGTTTCTTTGCGATTTTGAAAATggcaacaataattttttggaCTTGTTCCATCCCACATGTTGGCAAAGTGAAATGGCCAAAATTCGCTTGGAGTTTGTTAACTGGAATTTAAAAATATTACCCAATGATGGTCTGCCACAGAAGATCTGCAGCGattgttttacaaaattctGTTCTCTATATACATTTCGATTGGCCTGTCAGGAGGCACAAGTAAAACTCTTGAATATTTATGAGAAAATTGATGCTAGCAGTTTGGATGATGATACGGAGGCTGAAGAAGGCGGACAGGAGCTAGCAAATGATGCTAATGTTAAAAACGAAACAACTATAATGACGGTTTCAATTGAAACACCAAACACTGCCACTGTTCCTGCTCCAAGTGCTCCCATAGAAATCTATATAGATGCGGCAAATGTTGCAGATACAACTGAATACTCCCCAGAATTGGCAATTAGCTATGCctgtaaattttgtttcaagcCACAGGAGACCTTTCAACTGCAGCAATTGCTTCTCGAACACATCAGTACCGCACATGACCCGGAGCAACCGTATAATTGTCCTGAATGCAAAGCTGCTTTTCAAGATGCGGCTTCCCGTACCGTGCATATGAAGAGTGTCCATGTTGAGAAACAATTTTCTTGTGATGTATGCGGTAAGAAGTATGGAGATCGTCACAATCTCCGTCATCATGTGGAGAAATATCATTCCGACACAGATTTTGAATGCAGCATGTGTGAGAAACGCTTTTTTACAAGAAAAAGTCTACAGTATCACATAAAATGGCATAACCCAGAGCGCCAATTAAAATGTCCCCATTGCGAAAGATTGTTTATTAATCACAGGCATCTTACCACACATATGGCCACCCACAATCATATGACAGCCAGTGCCCGAAAGAGCGAGCATTGTGGTTTTTGTGGCAAAGCATTTATACACCTTAAAACTCTACGTTGGCACATCTATAGACAGCATGGCGGGGAGAAGCCTTACAAATGTGGAAACTGCACGGATGTCTTTGCTTCATATGCCGAAAAACGGATACACATGCTGGAGACGCACATGGAGAATCTGACAGCCATTGAAAGAAGTGAGTGTATGCTGTGTAGACAGGTATTTGGAAATGAACAGGACTTGGTTCACCATATGACTAGAGAGCACTTAAAGGGTCCTTCAGCCCCGGTGATAGTCAATAATAAACGTGTTCTGCAACAAAAACGAGAACGTCAGTATTCGGGACTTTTCCAGTGCCAAAGCTGTCCTCAACGTTTCAATATGAAGACCGCACTAGAAAGGCATGAGGTTGTCCACAGCGAAAAGGACCGACCACATGCCTGTAACCATTGTTCCAAGCGTTTTAAGCGTGCCCAGGACATGAAATGGCACATGAAAACgcatgaaaaagaaaaacctaatGTGTGTGATGTGTGTGGCAAGGCCTTTGCCCTAAAATATGTGCTTACCCAACACAAAAGGAGTCATGAAGTTCTAGAAAAAAACTTCAAGTGCAATGTGTGCGGACGTGCATATCTCTTTGAAAAATCGCTGCGACTTCATCAACGAGTTCATACGGGTATGACCTACTATAATTGTGACCTCTGTCAGGAGCGCTTTGTCACCCACATCaagttaaaaacTCATATGCAAAAGATCCATGCCCAAATGCAAGCAAAGGACCCCTCATTGGATGAATTGATCAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCALSMFLCDFENGNNNFLDLFHPTCWQSEMAKIRLEFVNWNLKILPNDGLPQKICSDCFTKFCSLYTFRLACQEAQVKLLNIYEKIDASSLDDDTEAEEGGQELANDANVKNETTIMTVSIETPNTATVPAPSAPIEIYIDAANVADTTEYSPELAISYACKFCFKPQETFQLQQLLLEHISTAHDPEQPYNCPECKAAFQDAASRTVHMKSVHVEKQFSCDVCGKKYGDRHNLRHHVEKYHSDTDFECSMCEKRFFTRKSLQYHIKWHNPERQLKCPHCERLFINHRHLTTHMATHNHMTASARKSEHCGFCGKAFIHLKTLRWHIYRQHGGEKPYKCGNCTDVFASYAEKRIHMLETHMENLTAIERSECMLCRQVFGNEQDLVHHMTREHLKGPSAPVIVNNKRVLQQKRERQYSGLFQCQSCPQRFNMKTALERHEVVHSEKDRPHACNHCSKRFKRAQDMKWHMKTHEKEKPNVCDVCGKAFALKYVLTQHKRSHEVLEKNFKCNVCGRAYLFEKSLRLHQRVHTGMTYYNCDLCQERFVTHIKLKTHMQKIHAQMQAKDPSLDELINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00555257;
- 90% Identity
- iTF_00556002;
- 80% Identity
- -