Dema009193.2
Basic Information
- Insect
- Drosophila emarginata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037075365.1
- Location
- JBAMCD010000174.1:5552153-5556736[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-122 1.4e-118 395.9 27.0 1 299 94 384 94 385 0.99 2 2 0.11 1.3e+03 -1.2 3.7 210 241 404 434 386 458 0.53
Sequence Information
- Coding Sequence
- ATGGATAGTACAAGCGCCACCGGTCGACGGCGAAACAATACGCGAGTCAATGCCGAGGATAATGCTCTAGATCAAATCACAAAAGAGGAAACCATCCAAACAATGGAATCGACAATAGGCGTtcaactaaataataaaagtgtcACAGCTGTAGATGATCAGGCTACTCCTACAACTACAGAGCCATGTCTAattgacgatgatgacgaaCCGTGCGACGACGATAGTGAGTCGGAAGATGAAATATTAGTTCATTTTTTGGGACAGGCAAATCTGATTgCCGAAGCGCGTTTGGCAGCGCGTCGACAGGCTCGTGCCGAGGCTCGTGATATACGCATGCGGGAGCTTGAGCGTCAGCAAAAGGAGCAAGAACAGAATGCCGACCGGGTCTTTGATATGCAAAACACCGGTGGAAGCGCAGACACAATTTCTGGCCATCCTGCGCGTCTTGTTTACGGCGGTGGCCTTTTAAATGTAACCCGTGCCACAGCATCGCGTCGCAGTAGCGAGGATTCATTAGAAGATGAAAGCCGAAGTTTACGCGACATGAAACATGAGCTCAAAGACGTTGAAGAACGGTTCCGAAAAGCAATGATAACGAATGCTCAGCTAGACAATGATCGTGCCTCACAAACTTACGAAGTCAAGCTACTCAAGGACAGAAGCGAAACTATGCAGGAGTCGTTGGCTCAGCTTCAACGCGAGTACAAGGAAAAAATGCGCGAATATAATGCATTGAAACGTAACTTGGATCGCACCACTTTGGAGCTACAACTGGTACAGGGCCAGTTGAATGAGCGCGATTCTTTGATAGCGGAACAGGGTCTTGTGATTGTAGCTATTGAGAATTCCGATGGCAGTGATGCCAAGCGGGCTCTAGTCAGTGTTGATAACGCCAATGTCTTAGCCTCTGTGCAGGGTTCGTTAGATGTAAGACTTAAAAAATTTAGCGAAGATAAACAACAGCTTCTTGCGGAGGTTAAGAAGCTTAATGATCAATTGGAAGAGTATAAACGTGACGGGAAAATAGGCCATGGTAGTTCATCGTATGGAACGTTCGGCTACGACGATGATTATGAGGCTCAGAgagaatcaaataaaataatttcggATTATAAGTATAAACTGCAAAAGGCTGAACAAGAAATTGCAAGTCTGCAGGCGAGCTTAGCACGTTCAGAAACTCAGGTTATACGATACAAGAGCACAGCGGAAGCAGCCGAAAAAGCGGAGGCTGAATTAAAGGTGGAACGGCGTAAACTTCAACGTGAGAACCGTGAAGTTTTGGAGCGACTGGAAGAAGCGGAAACAGCTAATAATCATTTACTGAAACGgcttgataaattaaaaaatgcaaagagCGCAATCCTCAAGGACTTATGA
- Protein Sequence
- MDSTSATGRRRNNTRVNAEDNALDQITKEETIQTMESTIGVQLNNKSVTAVDDQATPTTTEPCLIDDDDEPCDDDSESEDEILVHFLGQANLIAEARLAARRQARAEARDIRMRELERQQKEQEQNADRVFDMQNTGGSADTISGHPARLVYGGGLLNVTRATASRRSSEDSLEDESRSLRDMKHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDRSETMQESLAQLQREYKEKMREYNALKRNLDRTTLELQLVQGQLNERDSLIAEQGLVIVAIENSDGSDAKRALVSVDNANVLASVQGSLDVRLKKFSEDKQQLLAEVKKLNDQLEEYKRDGKIGHGSSSYGTFGYDDDYEAQRESNKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENREVLERLEEAETANNHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00600311;
- 90% Identity
- iTF_00600311;
- 80% Identity
- -