Ddem002884.1
Basic Information
- Insect
- Drosophila demipolita
- Gene Symbol
- retn
- Assembly
- GCA_035042405.1
- Location
- JAWNLI010000033.1:6084203-6094446[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-26 5.7e-23 81.1 0.0 2 89 20 105 19 105 0.96 2 3 5.9 1e+04 -3.1 1.7 80 80 252 252 216 298 0.62 3 3 3.6 6.1e+03 -2.4 0.9 20 39 274 298 241 313 0.53
Sequence Information
- Coding Sequence
- ATGCTCATCTCGGAGGATCAAATACAGGAGCTCTACGAAATCAATGATGATCCCAAGCGAAAGGAGTTTCTCGATGATTTGTTTTCCTTTATGCAAAAGCGAGGCACGCCCATCAACCGTTTGCCCATTATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATTTGGTGATAGCACGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTGTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCCGCATTCACCCTGCGCACCCAATACATGAAGTATTTGTATCCCTACGAGTGCGAGAAGAAGAATCTCAGCACTCCCGCCGAACTCCAGGCGGCCATCGATGGCAATCGTCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAGTCAGATGCCACTGaCAACAATTTCGCGACCACCGTTACCTggtggcatgcaacaaatgtcGCCGCTGGCGCTGGTCACACACGCCGCCGCGGCAAACAATCAGCAGGCGCAGGCagcggccgcagcagcagcagcacatcgACGGCTGATGGGCGCACCGGCCTTTGGTCAGATGCCGAATCTGGTGACGCAGGAGATTGAGAATCGCATGATGGAATATCTGCAGCTTATACAGGCcaagaaggagcagcagcagcagcaacagattgCGCCTGTTCTGGGCGCTACGCAtccccaccagcagcagcagcagcaacaatcgctGCATcatcaccaacaacagcagcaacaacaacaacaacagcagcagcagcagcaacagcagcagcagcgacagcgctCACAAAGTCCCGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCCTTGAACCTTTCGGATTCGCCGCCAACTTTGAATTTGAATCACATAAAACGGGAAAGGGAACGCGATCCGACGCCAGAGCCAACGGATCTGGAGGAAACGGCACATCAGCCGCCGCCAGCGAAACGTGTGGGCAGCGGCCTAATGCCGCCCGGTTTTCCCGCCAACTTTTACTTGAATCCCCACAATATGGCCGCTGTGGCAGCCGCAGCTGGTTTTCATCACCAGGCCGCcaacaatcatcatcatcagcagcagcaacagtcgcagcagcaggacGCCACGTCCGAGGGTGAACCAGAGGATGAGTATGGCAATGGGGAGCACAATACCACCGGCAACTCATCGTCGCTGCACGATGACAGTGAGGCACAACAGTTGAATGGACACCATCtacaccatcatcatcatgaccATCACGATCTGCTTCATGACCATCATCAtgagcatcatcatcatcatcagaatCATCTGGACAAGTCAGATGACTCGGCCATTGAGAACTCACCCAGCACatcgacaacaaccacaacaacatcatcatcctcatccatATCCAAAGCGCATCGCCACAGCTCGCCGGTGTCCACAAAAAAGAagggcggcaacaacagcagcagcctcaacaacaacaacaacaacaacaaatcgcaGTCCTTGTTGTGCACGAAGGATGCTGGCAATGACAGCAACAGTGCCAGCGATGTCAAGCTGAATCCCCTCGAGACGCTCAGCCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAACGGCACCAATGCAAATGGTGAACAACAGCTGATTGTCAATCTCGAGCTAAATGGGATTAAGTACTCGGGTGTGCTGGTGGCAGCCatccaagcagcagcagctgcagcggcagttacagcagcagcaggaggagcagccaAGCCAGAGGCGGCACAAGCTGAACGGGAGCAGGCAGCGACGCCAACTgctgaagttgctgctgctcatgaGGAGCCAGCAGTGAGACGCAACAGCCTCGCTGAGGATGAGAACAGCCAGAAACTTGGCCACAACGAGGCAATTGATGAGGAAACAATGCAggaacaccagcaacagcaacaacaactcacaGATGACATTGTGAATGGATCGAGTGTTGGCATTGGAGGAGTTGGTGTCACTGGTGGAGTGGGTGCAAGTCTGCTTAAGGATGCTGTGGTCAGTTCATAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHSQMPLTTISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGAPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQIAPVLGATHPHQQQQQQQSLHHHQQQQQQQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEETAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQSQQQDATSEGEPEDEYGNGEHNTTGNSSSLHDDSEAQQLNGHHLHHHHHDHHDLLHDHHHEHHHHHQNHLDKSDDSAIENSPSTSTTTTTTSSSSSISKAHRHSSPVSTKKKGGNNSSSLNNNNNNNKSQSLLCTKDAGNDSNSASDVKLNPLETLSLLSGMQFQVARNGTNANGEQQLIVNLELNGIKYSGVLVAAIQAAAAAAAVTAAAGGAAKPEAAQAEREQAATPTAEVAAAHEEPAVRRNSLAEDENSQKLGHNEAIDEETMQEHQQQQQQLTDDIVNGSSVGIGGVGVTGGVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00570178;
- 90% Identity
- iTF_00535094;
- 80% Identity
- -