Basic Information

Gene Symbol
ct
Assembly
GCA_035042485.1
Location
JAWNLH010000885.1:3712845-3750382[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.1e-26 9e-23 80.0 0.0 3 71 1174 1243 1172 1249 0.94
2 3 7.2e-32 6.1e-28 96.6 0.0 3 77 1636 1711 1634 1713 0.96
3 3 4.3e-31 3.6e-27 94.1 0.0 3 76 1926 2000 1924 2003 0.96

Sequence Information

Coding Sequence
atgaaaacaattttcaagctTAAGCAGCTCAACTACAGTAACAGCAACGTGCCACAGACATTGCCGCAAACACGCGCTACACTTGCCGAGAAGGAAGTGAACACACTCAAGGAACAACTATCCACAGGCACgccaggcagcaacagcgacaacagcaacagcgacaacagcaatacagcaacagcagcagcggcagcggcattGGCCAGCGGCGAAGAGGAAGCCACTGGGAACAGCGAAAGTGAGAGTGACAAGCTGCTGAATAGCTCGATTGTTGCAGCGGCCATAACGCTGCAACAGAACGGCGGCAATCTGCTAGCCAACACAAATACACCGTCGCCATCGCCGCCGTTGCTGAgtgccgagcagcagcaacagttgcagagCAGCCTGCAGAACGGCGTCGGTGGCGCTTGTTTAAATCCCAAGCTCTTCTTCAATCACGCACAGCAAATGATGATGGAagcggcagcggctgctgcggcggcagcagctgcagcggcagcacaacaacagcagcaacaatcgccCATGCACTCGCCCGTTGCTGCAACTAACAAtacgcaagcagcagcagctgcagcaactgcaacaacagcaggggTAACACAGCAGCAATCGGCACGCGGTCTTGCTGAGGCAACAGCAAGTAGCAATtgcaacgacgacgatggcgaGGACGATGACGAGGAGGATGCTTCGATGCAATCAAATGTGGCGCATGCCGATGGTGATCTAGACGATGATGATATGGAGTTGGAACCGGAGCATGTTGCTGATGGCGGTAGTGTTGCTGCCACTAAGTCATTGGCAAGAACTGATAGCATTGGCGATGCGAATGCAACACATAATGTTGATGATGGTCATCAtcgcgatgatgatgatgacgatgttgCCGATGTGGCTACCGATGAGCATGAGGATGACGAGGAAGCTAGTTTAAATATTAGCaataatcacaacaacaacaataataacagcaacaatactGATAGAAACAATAGCTGTAGTCgaaagagcaacagcagtgaAGCGCAACATGTTGCACTGCGTGATAATAATGTAAATGAGCAACATGTGGCACATTGCGCTGAGGACGACGATTGCACCAATAACAACACTaacaccaacaataataacaacaacaccaacaccaacagcaacagcaatgagaAGCGCAAAAAGCGCaatgcaagcaacaacaacaacaataataacaacaacaataatcaacCCGCTGTTCTATTAGCTGCCAAAGACAAAGAGGTAAGCAATCCATATTCAACGCTCACCAGCGGCAAGCCACAATGTGAGGCAGGCAGCAGTACCAAGCTCGCGTCCTGGTTAAGCCTCAAGCCACAGCATGTCACTGCCCGCCTGCCCGCCTGCCCCGCCCATTACGCCCTTAAGTCCTTAACATTAAAGCACTTTTGGATGAGTTGCAACGCCTGCGTGGTCTGGAACAAACTCACCTTGTACAAATCCAAAGGCTCGAAGAGCATTTGGAGAGTGAAGCGACAGCACATAATGCGTTTGGAGGCACGTTTGGATAAACAACAGATAAATGAGGCACTTGCCGAGGCAACTGCATTGGCTGCCGCTGTTAATGCGGCTGcgacaaacaataacaacaacaacaacaatagcagcagcaacaacaacaacaacaacaataatcacaGTAGCCAGGGCAGCGAAAGCAACAACGAGCTGAGCGCGGTGTTTAAATCAACAGATCTAACATCTACCCATCAGCACAATGACGATgaagacgatgatgatgatgatgataatgataatgttaATGATaacgataatgataatgataatgataaccATGCTGAGCTGTGCGatgtcgatgatgatgaggaggacACGGATACTGCTAACGAGCAGCATCATTCTGCCATTGGCAACAATCGGCACAACGATGATAACGAAAAGGATGACGACGAGGAGCAGGATGCCGATATATCcaatgccacagccacagcggACAGCAATGAGCTGAAAATCAAAAGGAACAGCACCGCCGCggccgcagcagccgctgcctGCGCCAACGATCCGAACAAATTCCAAGCTCTGCTCCTGGAACGCACCAAAGCTTTGGCCGCCGAGGCTCTCAAGAATGGCGCCAGCGAGACAGCGAATGCAAGCAGTGATGAAATgccgcaacaacaagcagcagacgcagcaaCAACCGCTAATCAAGTAACAGTAGAAGATGATgcagatgaagatgaagatgaagatgaagaacAAGAAGCAGTAAGAGCAGCAGCTACATCCACATCTACAGAAACAATCACAAATGTAACGGCAAAGCCTGAAAATGATTCATTGACCGAGGCCAACTTGCAGCCCAAAATCGAAATCATTGACACAGACGATGCTGATGGGGGCGGCACTGAGATTGCCGCTGGCCAAACACTGGAAGAACAGCTGGTCAATAGCTATTGGAGGCGCGGCTTTGagacatcaacagcagcagcaacgacaacagcagcagcagcagcagcagcagcagcagctgcaacagcagcagcagccactgggAGCAAAACGCCaacaatttatcaaaatgcCAATgtggtgcagcagcaactgttgccgccaccgccaccgccgccgccgctgccgccgtcacaacagcagcagcagcagcagcagcacttttctgcacagcaacaacaacaatatcaccaacagcaacaacaacaacaacagcagcagcaacatggaCCCTCGTCCACAGTGCTACTAAGTCAATTGGTTAACTCAACTTTCTTACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCCACACGCCTAGATGCCGCAtcccaccaccaacaccagcagcatcagccacagcagcagcagctgcttcaacagcagcaacatcaccacaacagcagcaatagcagcaacagcagttcaGTTGCCGGCAGCGATCCACTGaatccacatcatcatcatgcgCACCACCATGGCCATCCACATGGACAGCTGTTGCATGCAGCACATCATCTGCATCACGGTGCCGACTCGAACTCATCCAGCGCCAATAGCACACCCAACAGCACCGCCCAGCTGGCGGCCACCATTGCTAGCACGCTGAATGGCAACAAGTCACTGTTGCAGGCCGCGGCCGCTGCCAatgtggcagctgttgctgccgtttccgaggataacaacaacagcctgACGCCAAATGCGAATGCGGCTGTGGCCGCTGCAGCAATGGCTGCCCATGCACAGCATGCGGCCGCATTGGGTGCACCCAGTTTTCTGCCCAATTTGCCCAGCCTGCCGGCGTTTCAATTTGCGGCCGCCGCTGCGGCTGGCCAGGATCCTCGAACACAACATTTTCGCTTTGCGGATGCCGAACTGCAAATGCAGCCGGGCGTCTCGATGGCCGGTCGATTGGGTGAATCGCTAATACCCAAAGGTGATCCCATGGAGGCCAAACTGCAGGAGATGCTACGCTACAATATGGACAAGTATGCGAATCAGGCGCTCGACACTCTTCACATCTCTCGACGCGTACGCGAACTGCTCTCCGTGCATAATATCGGGCAGCGGCTGTttgccaaatatattttgggcCTGTCGCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAGCTAACCGAGAAGGGTCGTGACAGTTACCGCAAGATGCACGCCTGGGCCTGTGATGATAGTGCCGTCATGCTCCTCAAATCCCTCATCCCCAAGAAAGATTCGGGATTGCCACAGTATGCTGGTCGCGGCGCTGGTGGCGATGATTCCATGTCCGAGGATCGCCTTGCACACATACTCAGCGAGGCCTCGTCCCTGATGAAGAGCAGCGCGGTCGCcgcacagcagcaggagcatcAGCAGCTGCAGCTCCCCTTCTACAAGGACCAGCAGATTAAGCAtctgcagccgcagcagcagcagcagctgcagcatgcCACCGAGCATGCACAACGCGAACAGCGCGAAGCGGCCGCCGCCGTTGTTGCCgtacaccagcagcagcagcagcgggagcagCGCGAACAGCGCGAGGCCGCTCAgcgtgagcagcagcagcgcattcGTCACGACGAACTGGGACCGGACAAGATGGCCCGTCTCTATCAGGAGCTAATGACGCGCGCTCCACGCGAAGCAGCCTTCTCCAGCTTTTTGTTGACGCCGTTCTTTGGCGGAGCCGCTGGCATGCCTGGAGCAACCGCCAATCCATTCCCCACAGCAATGGCCGCCGACGAGAATATGCGTCATGTACTCGAACGTGAGATAGccaagctgcaacagcagcaggcacagcaGGTGCAGCAGGCTGCCAGTTTCCCCAACTTTTCCAGTTTGATGGCACTACAGCAGCAGGTGCTGAACGGTGCGCAGGATCTATCGCTGGCCAACAAGGATATTAAGTTAAATGGACAGCGCTCATCGCTCGATCAGCAcagtggcggcagcagcagctgctccaagGATGGCGAACGTGGCGACGATAACGACAGAAGCTATCCATCCCTGTCGCATGCTGCTCGCAAATCGGAGGGCGGCAACACACCAGCACCGCCCGCACCATCACTAACACAGACATCAGCGGGCAGCGGCAGTAATTCAAATGCAGCCAACTCAACGGTTGCCAGCGGTCATGGAAGCAACTCGGCGGCACCCAGTCCGCTGAGCAACTCAATACTGCCGCCAGCGCTGAGCAATCAGAGCGAGGAGTTTGCGGCGACGGCGAGTCCACTGCAGCGAATGGCATCGATTACCAATTCCCTGATTACACAGCCGCCCGTAACGCCGCATCATTCACAGCCGCAGCGGCCCACCAAGGCGGTCCTGCCACCCATCACACAGCAACAGTTCGATATGTTCAACAATCTGAACACGGAGGATATTGTGAGGCGTGTGAAGGAGGCGCTCTCCCAGTACAGCATCTCGCAGCGTCTATTCGGTGAGTCTGTGTTGGGATTGTCGCAGGGTTCCGTGTCGGATCTGTTGGCTCGACCCAAGCCTTGGCATATGCTCACACAAAAGGGTCGCGAGCCGTTCATCCGCATGAAGATGTTCCTCGAGGATGACAATGCGGTGCATAAACTGGTCGCCAGCCAGTATAAGATTGCGCCTGAGAAACTGATGCGCACGGGCAGCTACAGCGGCAGCCCCCAGATGCCCCAAGGATTGGCCAATAAAATGCAAGCGACGCTTCCCATGCAAAAGATGATGAACGAGCTGAAGCTGCAGGAGCCCGCGCAGGCGCAACACATCATGCAACAGATGCAAGCAGCCGCCGCAATGTCGGCagcaatgcaacagcaacagcaggccGCTGCCGCTCAAGCTGCCGCCGTACAGCAGGCGCAGGCACAGGCTCAAGCTCAGGCGAGCCAGCATCAGCAGgcgcagcaccaacagcaacagcaccaacaggtacatcagcatcagcaggcacagcagcaggcgcaggcacaggcacaggcacaggcgcAGTTGCTTCATCATCAGAATATGCTGCTGACCTCGCCCGGTTTGCCGCCGCAACACGCAATCAGTCTGCCGGCAGCGGTCACCCCTAGTGGCATCCAGTCGGGTGCAGGCAATCCAACAGCAGCGGGCAGCACTCCGGGTAGCAACGAGAAGAAGCCAATGATGATGCCGGTGCTGGGTGGTGTACATGCACCGAATGCAATGCGCAGTCTGCATCAGCATATGTCGCCCACGGTTTACGAGATGGCCGCACTCACCCAGGATCTGGACACGCACGACATAACGACGAAAATTAAGGAGGCCCTGCTTGCCAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTCGGTCTATCGCAGGGCTCCGTCTCGGAGCTGCTCAGCAAACCAAAGCCCTGGCACATGCTCTCGATCAAGGGTCGTGAACCGTTCATTCGCATGCAGCTGTGGCTGAGCGATGCCAACAACGTGGAGCGTCTGCAGCTGCTGAAGAACGAGCGACGGGAGGCGAGCAAGCGACGACGCAGCACTGGACCCAACCAGCaggacaacagcagcgatACGTCCAGCAATGATACGAATGATTTCTATACGAGCAGCCCGGGACCGGGTTCTGTGGGCTCATCGGTGGGCGGTGCACCGCCCAGCAAGAAGCAGCGTGTCCTCTTCTCCGAGGAGCAAAAGGAGGCACTGCGTCTGGCATTTGCACTGGATCCGTATCCGAATGTCGGCACCATTGAGTTTCTGGCCAACGAGCTAAGCTTAGCGACGCGCACCATCACCAACTGGTTCCACAATCATCGCATGCGGCTCAAGCAGCAGGTACCCCATGGCCAGCCAGGCCAGGACAATCCCATACCCAGTCGTGAGAACACAAATGCAACGCCCTTCGATCCCGTCCAGTTTCGCAtactgctgcagcagcgtcTCGTCGAGCTGCACAAGGAACGCATGGGCTTGAGTGGTGCGCCCATTCCCTACCCACCGTATTTCGCGGCTGCTGCACTGCTCGGTCGCAGCCTGGCCGGCATACCGggtgcggcggctgctgctggtgcagcggcagctgcggctgctgcagtggGTGCCGCCGGCGGCGATGAGCTGCAGGCACTAAATCAAGCATTCAAGGAACAGATGAGCGGCTTGGATTTGTCGATGCCAACGCTGAAGCGCGAGCGCAGCGATGACTATCAGGATGAGCTCGAGCTGGACGCAAGCGGACACAACATGAGCGACAACGAGTCCATCGAGGGTGGCAGCCACGAGCCGGAGCACACACCCCTAACCGAATACGAGAAGGCGCTGCAGAAATCGGCGCTCGCCTCGGCTGCGGCCGCTGCTGCATATATGAGCAATGCGGCGCGCAGTTCGCGTCGCAAGCCGGCGGCACCACAGTGGGTCAATCCGGCGGGTGCCAGCACACCGACAGCGGCTGGTGTCGCAGCGAGCATTGCTGGCGTcgacatcagcagcagcagcagcagcgagcgaATCATCAACGGTGTCTGCGTCATGCAAGGCTCCGACTACAATCGCGATGAGAGTGACAGCATCAAAGGTGGCGGCGGCGACTCCAATGCTGCCGATGCCGAGCACGACGATCACGCCCAGCTGGAGATTGAGCAGCGTTTCATGGAGCCCGAGGTGCGCATCAAGCAGGAGGAGGACGACGAGGACGAACaaccccagcagcagcaaaagcagcagttaGAAGACGCAACGCCTCTCGACAGCGAAGCGGAGAAGCAGCTCAACGTGATCAATGAGGAGAAGTTGCGTTTGGTGCGCGTGCGGCGCCTCAGCAGCAATGGCGATGCCGACGAGCTCTGCGCTGCTGCACAGCAGGCGACGACAGCCGGGGCGGCAGCGTCGCCGGCAGCAACATCATGGAACTACTAA
Protein Sequence
MKTIFKLKQLNYSNSNVPQTLPQTRATLAEKEVNTLKEQLSTGTPGSNSDNSNSDNSNTATAAAAAALASGEEEATGNSESESDKLLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSSLQNGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAAQQQQQQSPMHSPVAATNNTQAAAAAATATTAGVTQQQSARGLAEATASSNCNDDDGEDDDEEDASMQSNVAHADGDLDDDDMELEPEHVADGGSVAATKSLARTDSIGDANATHNVDDGHHRDDDDDDVADVATDEHEDDEEASLNISNNHNNNNNNSNNTDRNNSCSRKSNSSEAQHVALRDNNVNEQHVAHCAEDDDCTNNNTNTNNNNNNTNTNSNSNEKRKKRNASNNNNNNNNNNNQPAVLLAAKDKEVSNPYSTLTSGKPQCEAGSSTKLASWLSLKPQHVTARLPACPAHYALKSLTLKHFWMSCNACVVWNKLTLYKSKGSKSIWRVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNNNNSSSNNNNNNNNHSSQGSESNNELSAVFKSTDLTSTHQHNDDEDDDDDDDNDNVNDNDNDNDNDNHAELCDVDDDEEDTDTANEQHHSAIGNNRHNDDNEKDDDEEQDADISNATATADSNELKIKRNSTAAAAAAAACANDPNKFQALLLERTKALAAEALKNGASETANASSDEMPQQQAADAATTANQVTVEDDADEDEDEDEEQEAVRAAATSTSTETITNVTAKPENDSLTEANLQPKIEIIDTDDADGGGTEIAAGQTLEEQLVNSYWRRGFETSTAAATTTAAAAAAAAAAATAAAATGSKTPTIYQNANVVQQQLLPPPPPPPPLPPSQQQQQQQQHFSAQQQQQYHQQQQQQQQQQQHGPSSTVLLSQLVNSTFLHANHSSCSNSKSTRLDAASHHQHQQHQPQQQQLLQQQQHHHNSSNSSNSSSVAGSDPLNPHHHHAHHHGHPHGQLLHAAHHLHHGADSNSSSANSTPNSTAQLAATIASTLNGNKSLLQAAAAANVAAVAAVSEDNNNSLTPNANAAVAAAAMAAHAQHAAALGAPSFLPNLPSLPAFQFAAAAAAGQDPRTQHFRFADAELQMQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDSAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRLAHILSEASSLMKSSAVAAQQQEHQQLQLPFYKDQQIKHLQPQQQQQLQHATEHAQREQREAAAAVVAVHQQQQQREQREQREAAQREQQQRIRHDELGPDKMARLYQELMTRAPREAAFSSFLLTPFFGGAAGMPGATANPFPTAMAADENMRHVLEREIAKLQQQQAQQVQQAASFPNFSSLMALQQQVLNGAQDLSLANKDIKLNGQRSSLDQHSGGSSSCSKDGERGDDNDRSYPSLSHAARKSEGGNTPAPPAPSLTQTSAGSGSNSNAANSTVASGHGSNSAAPSPLSNSILPPALSNQSEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAQAQASQHQQAQHQQQQHQQVHQHQQAQQQAQAQAQAQAQLLHHQNMLLTSPGLPPQHAISLPAAVTPSGIQSGAGNPTAAGSTPGSNEKKPMMMPVLGGVHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEGGSHEPEHTPLTEYEKALQKSALASAAAAAAYMSNAARSSRRKPAAPQWVNPAGASTPTAAGVAASIAGVDISSSSSSERIINGVCVMQGSDYNRDESDSIKGGGGDSNAADAEHDDHAQLEIEQRFMEPEVRIKQEEDDEDEQPQQQQKQQLEDATPLDSEAEKQLNVINEEKLRLVRVRRLSSNGDADELCAAAQQATTAGAAASPAATSWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00495757;
90% Identity
iTF_00494897;
80% Identity
iTF_00498049;