Dcol013300.1
Basic Information
- Insect
- Drosophila colorata
- Gene Symbol
- -
- Assembly
- GCA_035041545.1
- Location
- JAWNLD010000662.1:1859618-1866718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.063 4.1 8.0 0.3 1 23 1288 1311 1288 1311 0.94 2 13 7.9 5.1e+02 1.4 0.2 1 23 1478 1500 1478 1500 0.91 3 13 0.00018 0.011 16.1 2.7 2 23 1503 1524 1503 1524 0.97 4 13 6.8e-05 0.0044 17.4 0.2 3 23 1532 1552 1530 1552 0.98 5 13 5.7e-07 3.7e-05 23.9 4.1 2 23 1559 1580 1558 1580 0.97 6 13 5.4 3.5e+02 1.9 0.4 5 23 1593 1611 1591 1611 0.96 7 13 1.3 86 3.9 5.4 3 23 1618 1639 1616 1639 0.93 8 13 0.14 9.2 6.9 0.2 2 23 1650 1670 1649 1670 0.96 9 13 5.4e-05 0.0035 17.7 0.4 1 19 1676 1694 1676 1698 0.95 10 13 1.6e-05 0.001 19.4 0.5 1 23 1706 1728 1706 1728 0.98 11 13 0.0001 0.0066 16.8 7.6 1 23 1734 1756 1734 1757 0.96 12 13 0.0002 0.013 15.9 5.9 1 23 1762 1784 1762 1784 0.98 13 13 0.028 1.8 9.1 8.2 1 23 1790 1812 1790 1813 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAGTGTACAGTGCCCCGTGTGCACCCTGTATCTGCATGCGGGCATGAATCTCTCCGATCACTTGGAGACCCATCCCAAGGAGCAGGTCATCAAGGCGCTGGTACAGATGACCATCGTCGGCAGCACTGGCATGGACAGCGCCCTGGCGGCAGCTGTGCTCTCCGGCAGCGCTGCAGCATCagatgccgccgccgcctcatCATCGCCATCATCCacgcccgctgctgctgatgtgaAGCCAGTTGTGCCAGCAGCACCTTCGCCACCAACtccaaccacaacaacagcaacaacaacagcagcaacaacatccaAATCAGCAGCAACCAAAGCTGCGTtgcacatcagcagcagcatcagcagctgcaacaacaaattgagcAATCCACCGATTAAGGCAGTTAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCACCACATCCAACACACCCACCACAAGCAGCGTGGCCGCCGTATACGCCGACTATCGCTACGAACAGCAGCCCCAGCAGCAaccccagcaacagcagcagcagcaccatgGTTTTCCACGTGGCGCCACCACGCTGGTCATACCACAGGCAccacatcagcagcagcaccagttCCTGGCCAGCCAACAGCAGCCTGCGCACTTTGCCCACCATCCGCAGCCGGCGATGAAGTACGCATATGCAACAGCGCtgcctccgccgccgccgccgctgcagCTGTTTGCGCAGCAGGCGACGTCGACGCAGTCGCATCAGAAGCCACCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGcacaaccaaaacaaacagcaacaacaacaacagcagcagcatcaacaacaacacatcAACGTGCAACAGAACGTTAACCTAGCACCACCGAGCGACAAGCACAGCAAGGTCCACACGGAGATCTTCCTAAATCCACCGCCTCCACCACCGCCACATCTCACGATTCCACCAGCGTCGGCCGCATCCCGACTGCAGcatccacagcagcagcaacagcaacaacaatccctagcagcgggcagcagcagcggcaacagcagctatgTGGTCATGATGTCTATGATGTCATCCAGCTCAGCCGGACgcgccagcagcagtcgcCAGTCGAGCAGCTCGCCCTTTGGCGCCCTGCTGAATGCTGCGGCCCAAGCGGCCTGCGCCTCGCCCGCCTCCTCGGGCGCTGCGTCTGTGCTGCGCTATGCCGAGTCGCCAGTGGCGCACTATCTGGAGCGGGAGAACGGCGACTTTATAGTCCAGGAGACGCCCAAGCACATTGTCGAGTGCGTCGAGAAGGACGACGGCGAGTTCTCTGTGATTGAGCGCATCTATCAGTCGCCACTCAGCGTGCTGCACATccacgacgacgatgacgacgacgaagaggacgaggaggaggaggaggaagaTAAGGGCTGGGCACACAGCGATGATGAGGATCACGTTAAGCTGGCGCAGGAGCACGTCGAGGATGGCGACGATGAGCACGAGGATAGCCGCAGCAGAGTTGGCCCCAAGACCACATCGAAGAAGTCACGCAAGGCTAAACCAAATGGCAGAAAGCACAAGCGTGCTGCCAAGCATCAGCCGGAGGACGAGGACGACTTCATGAGCATAGGCAGCAGCTGTGCCGAGAGCGATCACCagctggaggagcagcagccggcacagGCGCAACAGTCGCATGCTGCACCGGCTGCGTCCGCGTCGCCAGCTCAGCTGTGCACGGCGCCTTCGACGAGCGGTGGAGCAGCTGTCGCAACTGTGTCCGCTGTCGCCTCGAGCGCCGCCAACTTGACGCCCAGCGGCTCCCTCAAGTCCAAGAAGAATCGCGTGACGGTGCTCAGCGATGTGCCGCTGAACATGAACGAGTATCTGGATCTGATGGGCAACCTTGTGGCCTCCACTCAAAATGGTGCGTCTCGTCCGTTTGCCGCCGTGGCGCCCATACCGCTGGTCAAGGTGGAAAAGGAGGAGCCGCTGGACGACTACGACACTGTGCGGGATGCGGAGATGCAGTCCATGGAGCAAAAGCCCAGCTTGGAGCATGCCAgcggtagcagcagcagcaacagcagcagcagtggccaCGGCACCACCAGCGTCATTCGCAtggccagcaccagcagcagcgcgaaCGTGGCCACCGAGGATCTCACACAGCCGCCGCCGATGAAGGTGGAGGTGGAGCCGACGGTGCTGATGCCGCAGCGCTTTTCGACGCCGGCGCAGCAGCGTGGACCCAAGAAATTAGTCATCAAACCAAAGGccacagcgacggcgacggcaccGACGAAAAAGACTGACAagaacaacagcggcaacaacaactgcgccGAAAGCAGCCCCAGCATATCAAAGGCGTCCACGGAGCCGGTGCAGATCAAGAGCGAGAACGTGGAGGCGGCCACAAGTGGCAGCAGCATTCTGGAGAAGCACCTGACCACCAGCTATGCGGCGCAGCAGGCGCGCAAGCACTCGGCCGTCAACGATGACGATGCGCGGGTGCTGCTCGAGTTCGCCAACTCGAAGCAGCTGCCCCTGgctggcaacagcaaccagACCACGTTCGTGGTGAACGCGGCCAGTTTTGCGTCGGCGGGCTCCGTctttgccagcagcagcggcagcagcggcggcgtccAGAAGTCGACCAAGCCGGGCGACGAGTACATTCTGCCTGATGATAACAATCTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTATGCCTCCAactcgcagcagcagcagcagcagtctcagtcgcagcagcagcagccagcgcagcaggcagcgcagcaggcgcagcagccgTCCGCCTTTACAGACTTTAATTTCCTGTACCATCCcaacacgacaacaacaacagcagcagcagcaacagcagcagcagcagcagcaacaaccgcTTCCAACTTTGCGCCATTTGGcatacagcagcagcaacaacaacagcagctgcaacatgcACACCACGGCTCCAGCGAAGCCACCAATGCCGCCACCTTGGCCTCGTCGTCCAGCAACTCATCCGCTTTGGACCAGGATTGCTCGATGAATGCCACGTTTCGCGTGGCCAAGCAACAAACGCCGCTGGGCGCCTGGTATcagtcacagcagcagcagccgcagtcaACCAGCTCCGGCGTGGAGCAGTCGAGCAATTTCATTGCCGCACTCGCCGCCGTCGACTGTTGCAGCGTGGCGGCCGTGGACAGCGATGCCAAGTACTTGGACCTGGACGCCTGCAAGCGCGAGCAGctgagcaacagcagcagccatttGCCCTCGGCATCGGCGTCCACGTCGACAACATCATCCTCGTTTGCAGCGGCGCCAACGGAGAGCAGTCTGGTTGGCGGCCTGGGCCTGAACATACGCACCGATGAGAAGATGCCCGCCAAGGGTGAGATCTCCGAGCAGGAGAGCAACTGCGACATCGAGAACTCCTGGAGTCAATCGGTGTACGGCGACATATCACAGCGTTACTTTAGGGGCCAGTTCACCGATGGCTACAATCAGCAGCTGGCCGATTGGCGGCACGACTACTATCCGGCACAGGATCTCagtggccagcagcagccgcagcgggAGCAAAAGCGCTTTGACTTCAATGCGGTCGGCGCGGAGTACGCGCAGCCGGGCGATCTGGACGCCAACTCGAGCTCAACTAGAAACAATCAATTGCTGGATGCACAGCCCACCActtcctcgtcgtcgtcggcttTGCTGGCTGGTCCACCAATAGCCTCGACATCCCGTGCGGCCGCCGAGGCGGAGGCCGTGGCCGCGGCGATGGCACAACGGAAGCCGCCGCGGCGCAAGATCTACAAGTGTCCGCACTGTGCGGCCATCTTCGAGAAGCTCAAGGAGCGCAACGCGCACATGATAGACGAGCACAACTATGTGCGCCAGAATCGACGGCTCATCTGCACCCTGGCGTCGCACATGCCACAGCCGCAGGCTCCACAggagacgcagcagcagcagctgcagcaacagcagcagcatcagcatctgTTGCTGCAGGCGGGGCACAGCAATGACGATGTCCTGCACGAGGACTCCAAGGATGGCATTGTGAAGATCAAGCAGGAGCACTGTCAGGATAAACAGGATTCGACGGAGCAGCTGCTTGGCCACATGGAGATGCCCGATGTCAAGGACACGGGCCTGCTCGATGCCAGCGACGAGAACGGTCGCGACGCGGACATGAAGCCACCAACCAGCGTCACCGAGCTGGACGAGAAGCCCACCATAGCGCCGTTGGCCATGACCACGCCCGCCGCCAAACTGGCCGCCCTCTATCGTATGCTCATTGCCTACAACGAGTCCAAGCTGGGCCAGGAGCGCAACAATCTCAGCGAGCTGGAGCAGAAGGCCATGGAGAAGTCCATATTCCTTTGCTACGTCTGCCGCACCGATTTCCCCTCTGTGAAGCTCTACGATGCGCATCTGACGGAGCATCCCGCCGAGTGTTTCACCTGCGGCAAGAAATTCTATCGCTGGAAGAACTTCTCGCTGCACCTGAAACGTCATCTCGGCTGGAAGGAGTTCGGCTGCTACGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCTCTCGTGGAGCACATGCGCATGCACACTGGCCAGACGCCGCTCAAGTGCAAGATATGCGGCAAGAAGTTCAAGCGCTATTCCAACTTAACGCAGCACCGCAAGCGGCACACCAAGATGATGGTGCGCAAGAAGGAGTACGTGTGCCACTGCGGCGAGGTGCTGCCCTCGAAGGCGCGCTTCCTGTGGCACAAGGAGACGCACGACTTGAAGCCCAAGTGTTGTCCGTACTGCTGCGATCGTTTCGTGCACGCGAACTCGCTGCGCCGGCACATTCGACTGGCCCATTCGGACAAGTTCGACTATGCCGAGCCGATGGAGTGCCCCATGTGCAAGCAGATCTTTGCCAAGACATCCATCAAGGCGCACATGGCCACCCACTCGACGGACCCGCAATACGACTGCGCCATTTGCAACAAGAGCTTCTCCACCAAGTGGAATCTCAAGATACACTCGTGGGTGCACGCGAATCGCACGGCCAAACCCTTCAAGTGCGAGTACTGCCCGAAGGCGTTCGTGCGCGAGCTGGACTTCAAGAACCACATGAATGCCCACAAGCAGATCAAGCCCTACACCTGCGAGTACTGCGGCTGCAAGTTCATACGCAAGTACAACTATATGCGACATCGGCGGGAGCATCATGGCAACAAGAAGTTCACCTGCGACCAGTGCGACAAGTCCTTCCATCGCCACTACTATCTGATCGAGCATAGGCGCATCCATACCGGCGAGCGGCCATTCCACTGCACCATCTGTGGCAAGAGCTCGACCACGAAGACCAATCACAATAAGCATCTGAAGATACATCATTCGCGCGATCCCTTCACGGTGGAGGTTTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGSTGMDSALAAAVLSGSAAASDAAAASSSPSSTPAAADVKPVVPAAPSPPTPTTTTATTTAATTSKSAATKAALHISSSISSCNNKLSNPPIKAVKSAPPTTEAPATTSNTPTTSSVAAVYADYRYEQQPQQQPQQQQQQHHGFPRGATTLVIPQAPHQQQHQFLASQQQPAHFAHHPQPAMKYAYATALPPPPPPLQLFAQQATSTQSHQKPPPAYGAAISQIRSQHNQNKQQQQQQQQHQQQHINVQQNVNLAPPSDKHSKVHTEIFLNPPPPPPPHLTIPPASAASRLQHPQQQQQQQQSLAAGSSSGNSSYVVMMSMMSSSSAGRASSSRQSSSSPFGALLNAAAQAACASPASSGAASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPLSVLHIHDDDDDDEEDEEEEEEDKGWAHSDDEDHVKLAQEHVEDGDDEHEDSRSRVGPKTTSKKSRKAKPNGRKHKRAAKHQPEDEDDFMSIGSSCAESDHQLEEQQPAQAQQSHAAPAASASPAQLCTAPSTSGGAAVATVSAVASSAANLTPSGSLKSKKNRVTVLSDVPLNMNEYLDLMGNLVASTQNGASRPFAAVAPIPLVKVEKEEPLDDYDTVRDAEMQSMEQKPSLEHASGSSSSNSSSSGHGTTSVIRMASTSSSANVATEDLTQPPPMKVEVEPTVLMPQRFSTPAQQRGPKKLVIKPKATATATAPTKKTDKNNSGNNNCAESSPSISKASTEPVQIKSENVEAATSGSSILEKHLTTSYAAQQARKHSAVNDDDARVLLEFANSKQLPLAGNSNQTTFVVNAASFASAGSVFASSSGSSGGVQKSTKPGDEYILPDDNNLEVDEIVISSSSSYASNSQQQQQQSQSQQQQPAQQAAQQAQQPSAFTDFNFLYHPNTTTTTAAAATAAAAAATTASNFAPFGIQQQQQQQQLQHAHHGSSEATNAATLASSSSNSSALDQDCSMNATFRVAKQQTPLGAWYQSQQQQPQSTSSGVEQSSNFIAALAAVDCCSVAAVDSDAKYLDLDACKREQLSNSSSHLPSASASTSTTSSSFAAAPTESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSVYGDISQRYFRGQFTDGYNQQLADWRHDYYPAQDLSGQQQPQREQKRFDFNAVGAEYAQPGDLDANSSSTRNNQLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAAMAQRKPPRRKIYKCPHCAAIFEKLKERNAHMIDEHNYVRQNRRLICTLASHMPQPQAPQETQQQQLQQQQQHQHLLLQAGHSNDDVLHEDSKDGIVKIKQEHCQDKQDSTEQLLGHMEMPDVKDTGLLDASDENGRDADMKPPTSVTELDEKPTIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516419;
- 90% Identity
- -
- 80% Identity
- -