Dcol011185.1
Basic Information
- Insect
- Drosophila colorata
- Gene Symbol
- -
- Assembly
- GCA_035041545.1
- Location
- JAWNLD010000564.1:10895636-10897249[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8 5.9e+03 -3.0 0.0 9 17 244 252 244 253 0.85 2 4 1.3e-16 2.1e-13 49.7 0.0 2 45 368 411 367 411 0.95 3 4 0.062 97 2.8 0.0 28 37 441 450 440 455 0.90 4 4 1.2e-19 1.9e-16 59.4 0.0 2 42 477 517 476 519 0.96
Sequence Information
- Coding Sequence
- ATGGGGCACTCCTCCACAATAATGGATATACAGCGCGTACTGCTGGACCAACAAAGCAACAATCAGCAGTGCGAGGTCTTGCTTGTGGCCAGAGACGGCATCAGCGTGCGCGCCCATCTCTTCGTGCTGAGCACGTGCAGCGATCTGATGCGAAATTTGCTGGTCGATTTGCCCGCCGGCCAGGAGGCGACTGTCATTCTGCCCGATATCCGGGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGCGAGACCAGCTTACCCTCTGCCCTGCTCACCGAGTTTCTGGAGGCCATCAACCTGTTGGGCATCAAGTCGGCCATCAGCTTCGAAACCAATCCCACTGCCGTGACCACCTCAAATGTCATCAGCGGCGCCATGGCCGTCGAGGCCGCCAAGTCAATAAGCGGCTTACACATTGCGAACACAGCCCTcatggaggaggaggaggaggaagaAGACCCCGGCGCTGTGGTCGGTAAACTGGAGGTAGGAACTGCTGTGCTCGCCAATGCCCAACACCAACATCACGACCATGATGGCCGATCGTTAGAGTTCCTGGATATGTACGGGGATCAACCCAAAATCACGTATTCCATTGAGCATATGGGCGGCACAACCAGTGGCAATCAGTATATTTTAACGGAGAACACGGGAACATTCACCATCACACAATCTGCGTCATCTGTGGCTAAGCTGGGTGTATCGGGGACTTCGGCTGTTGTGGAAGCTGTGGCGAGTGGTGAGCTGGGCGACGATGATGTGGAGGCTGATGTTACTGACGAGCACGACGAGTCCGAGTCACAGCTAATCGAGGAGGAGTATGTGGGCTCCGCAGATCCTCTAATAGAAATGACCGCGGATGCGGATGGGGATGTTGACATGACCGAAGATGGAATGCACGAAGCGGACGTCGGGGACGAGGAGGAAGATGACGAACTACTGGATGTCAAGCCGCACAAAGTTCACCTAGATATGAAGATGTTGAAAACAAAGTCGCGGCAGCGTTCGCCGTCGTCAAAGtccataaaaaaaacgatGACGAAGCAGCATCAACAGGCCGCCGCACTCAAAAAGGAGATGAAGGACGACATCAATGATGCCCTGGATCTGGCCGCTGCGGCGGTGCTCCACGAGGGGCTCAGTCTTCAAAAGGCCGCCGATCGCTACGACATATCGAAAACCGTGCTATGGCGACGTGTGCGCTCCAATCCGGCCTACATGCGAATAAAGCGGGAGAAGCCATCGCTGTCGGAGGCGTACGAGCGTCTGAAGAGCGGCGACTCGCTGAAGAGCATTAGCCAGGATCTGCACATACCCATGTCGACGCTGCACCGGCACAAAGTGCGTCTGGCGGCACAAGGGCGTCTGCCCGATTTCGTTTCCTGCCGGCGGCGGGACAGCACCCCGAAGGACGAGCTGCGCGACAAGCTGGCCAAAGCGGTGCACGCCTGCATAAACGAAGGCATGTCACAAAACCATGCGGCCAATCTCTTTGAAATTCCCAAAAGCACGCTCTGGCGGCATTTGCAGCGGCGCGTTACCGAGGCGGAGCGGAAAGTGAAGGAGGAGCAAGAGGAGGATGACGACGAAGATGTGCTCAACTAa
- Protein Sequence
- MGHSSTIMDIQRVLLDQQSNNQQCEVLLVARDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAVTTSNVISGAMAVEAAKSISGLHIANTALMEEEEEEEDPGAVVGKLEVGTAVLANAQHQHHDHDGRSLEFLDMYGDQPKITYSIEHMGGTTSGNQYILTENTGTFTITQSASSVAKLGVSGTSAVVEAVASGELGDDDVEADVTDEHDESESQLIEEEYVGSADPLIEMTADADGDVDMTEDGMHEADVGDEEEDDELLDVKPHKVHLDMKMLKTKSRQRSPSSKSIKKTMTKQHQQAAALKKEMKDDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKSGDSLKSISQDLHIPMSTLHRHKVRLAAQGRLPDFVSCRRRDSTPKDELRDKLAKAVHACINEGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDDDEDVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00549654;
- 90% Identity
- iTF_00530367;
- 80% Identity
- iTF_00495965;