Dcol005153.1
Basic Information
- Insect
- Drosophila colorata
- Gene Symbol
- retn
- Assembly
- GCA_035041545.1
- Location
- JAWNLD010000272.1:776195-785872[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-26 5.5e-23 81.1 0.0 2 89 20 105 19 105 0.96 2 3 1.9 3.7e+03 -1.7 0.2 21 39 267 290 232 305 0.53 3 3 4.5 8.6e+03 -2.8 0.3 13 16 395 398 371 412 0.51
Sequence Information
- Coding Sequence
- ATGCTCATCTCTGAGGATCAAATACAGGAGCTCTATGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTCGACGATTTGTTTTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGCCTGCCCATTATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTAATAGCGCGCGGCGGCCTTGTCGATGTTATCAACAAAAAGCTCTGGCAGGAGATCATCAAAGGACTGCATCTCCCGTCCAGCATCACCAGTGCGGCATTCACGCTGCGTACCCAATACATGAAGTATCTGTATCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTCCAGGCGGCCATTGATGGCAACCGGCGCGAAGGACGCCGCTCCAGCTACGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACGCCCATTTCGCGACCGCAGCTGCCTGGTGGCATGCAGCAGATGTCACCGTTGGCGCTGGTCACACACGCCGCGGCGGCCACTAATCAGCAGGCGCAGGCAGCGGCCGCGGCCGCGGCTGCGCACCGCCGACTGATGGGCGGACCGGCCTTTGGCCAGATGCCGAATCTGGTGACGCAGGAGATCGAGAACCGGATGATGGAGTATCTGCAGCTCATCCAGGCCAAGAAGGAGCAGAGCGCGCCAGTGCTGGGCGCCACGCACAcccaccagcaacagcagcagcagcagcaacagtcgctgcaccatcaccagcagcagcagcagcagcaacaacaacagcagcagcagcagcggcagcgctcGCAAAGTCCCGAGCTGAGCACGCGCGACGCGCTCAGCGCGCAGGTGGCGCTGTGGCACATGTACCACAACAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAGCGCGAAGCCTTGAACCTCTCCGATTCGCCGCCAACTCTCAATTTGAATCACATaaaacgggaacgggaacgcgATCCAACGCCGGAGCCGGCGGATCACGAAGAGACACCGCACCAGCCGCCGCCGGCGAAACGTGTGGGCAGCGGCCTGATGCCGCCCGGTTTTCCCGCCAACTTCTACTTGAATCCACACAACATGGCGGCCGTTGCGGCCGCCGCGGGCTTCCATCACcaggccaacagcaacagcctgAACAACCTGAACCATCagcaccatcagcagcagcagcaacagctgcagcaacagctgcagcagcagcagcagcacgatGCGGCCTCCGACGGCGAGCCGGAGGACGAGTACGCCAACGCGGAGCACAACACCACCGGCAATTCGTCGTCCATGCACGAGGACAACGAGCCGCCGCAGCTGAACGGGCACCACCATCATCACCATCACGACGACCACCATGAGCACCACCACCATCACCACCATCAGAACCATCTGGACAAGTCGGATGACTCGGCCATTGAGAACTCGCCCAGCACGTCCACaacggcgtcggcgtcgggcGGACATCGCCACGGCTCGCCGGTGTCCACCAAGAAGAAGGGCGCCGGCGGCAAGGCGCAGTCCGGCGCCAAGGACGACAGCTGCACGGACAGCGCCGGCGGCAGCAGTGGAGGGATTGCCGGCATCAAGCTAAATCCCCTCGAGACACTCAGCCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCGCCAACGGCGAGCAGCAGTTGATTGTCAATCTGGCCCTGAATGGCATTAAGTACTCGGGTGTGCTGGTGGCCAATGCCGCTCGGCCGGAGCCCACCGAAGACGCCGACACGCCCACCACGGCCGCCACCTCCGCGGAGCCAGCGAGCGACGAGCAGGCGGAAGCCGGCCACGCTGCGGCCAAGCACGAAAGCCGAGAGGATGTCGGCCAGAACGAGGCCAACGAGGAGGAAACGCAGCAGTCCACGGACGACACCGTCAATGGGGGCGGCCTGGGGGTGGGCGTAGCGGGCGCGGGTCCGAGTGCGGGTGCGGGTGCGGGGGGCAATGCAAGTGTGGGCGTATCCCTGCTTAAGGATGCTGTGGTCAGTTCGTAA
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPQLPGGMQQMSPLALVTHAAAATNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQSAPVLGATHTHQQQQQQQQQSLHHHQQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADHEETPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSNSLNNLNHQHHQQQQQQLQQQLQQQQQHDAASDGEPEDEYANAEHNTTGNSSSMHEDNEPPQLNGHHHHHHHDDHHEHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHGSPVSTKKKGAGGKAQSGAKDDSCTDSAGGSSGGIAGIKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLALNGIKYSGVLVANAARPEPTEDADTPTTAATSAEPASDEQAEAGHAAAKHESREDVGQNEANEEETQQSTDDTVNGGGLGVGVAGAGPSAGAGAGGNASVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512501;
- 90% Identity
- -
- 80% Identity
- -