Dcar015988.1
Basic Information
- Insect
- Drosophila carrolli
- Gene Symbol
- -
- Assembly
- GCA_018152295.1
- Location
- JAECXJ010000170.1:4054546-4060464[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8e-12 1.8e-08 33.9 0.0 1 40 565 605 565 608 0.90 2 4 4.4e-14 9.8e-11 41.2 0.1 2 39 620 657 619 660 0.94 3 4 1e-17 2.3e-14 52.8 0.0 1 45 674 719 674 719 0.98 4 4 1e-19 2.3e-16 59.2 0.0 1 43 726 769 726 770 0.97
Sequence Information
- Coding Sequence
- ATGCCCATGCCACCCCAAATCCTCCCCAGCTCCGCCTCCATCTCCTCCTTTGCAAAGGCGGGCCTCTTGCGCACCGCCGAGCAGCTAAAGATCAAAGGCCTCTGCGAAACCGCCGAGAACGCGGATGACCTCAACGACGCGGCTACAGCAACAATCACTTTCCCCGGAGCTCCGTCGCCCTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCCCTGCTGACGCAACACGGAGTGCCCAGCGGAAGTGTTTCCCTATCCGGGCAATTGCTTAGCTCCTCGGCCAGCGGTAGCAGCGGAAGCTCAGCCGGCGGACAGCAGGCTCCACAGACGCCATCCGGTTTGCAGCCGACGCCACGCAAGTCTCGACTTAAGCGCTCCAAATCGCCGGACTTGCCAACGGGCGGAGGAGCAGGAAGCTCTGGAGGCTCCAGCAGTTCATCGTCGCAGCAGCAGCAACCCCAGCCGGCGCACCACCACCACCCGCAGACCATTCTCATCCAGGGCCAAAATCCAAATTCTATTGTGAGCCTGCAGCAGACGGCCGACGGCAATTACATACCAGTGCCAGGAACTGGAGACGATTCAGACCACGAGAACAAGCCGAATAAGATCTGCAAGACCGAGCAATCGGTGGCCTCGCCGGCGTCTAATTCATCCAGCGCCTCAAACAATGCAGCGGGCGTGAGCGGCGTGACATCCACCGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTCACGGAGCACGTCGATCTGTCCTGCAATCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATCTGGCTCAGCAGATCCATCGGCTCGATCAGTCCCCCATGCACTCGATATCTCATCACCACACCGGCGATGAGAGCAACTCGAATCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGTGCACGGCCAGCATGGGGGACATGTGACGCACGCCGACATCAGTGGTGCCACAGTCATGGAGATTGATCCGAGCCAGATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGGCATATGGACATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAACGGCTCGCCGCATGATCAGAAGGAGCCACACTATACGAATTTGGACCAGCAACACGGGCTGGGTGGCAGCAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGCCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAATGCCTTGGAGGCGCTGCGTTCGGGTCAGATATCCGCAAACAAAGCGTCGAAGGCTTTCGGCATCCCCTCCTCTACGCTCTACAAGATTGCCCGGCGCGAGGGCATCCGCCTTGCGGCTCCCTTTAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGAGCCTTGGAGGCGATACGGGCGGGTAATACATCAGTGCAGAAAGCCAGTGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAACGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGCGGGAAATACGACGTGGTGGCCAACACGAGTGGCGTGGCGCTCCTCAACACCTCGGGCAACACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCATATGTTACAGCAACAGTTCCCGTACAGCCCCTCGCCGCATCCGCCAACTCCGCAGCACCACAGCACGCCACAGCACCACAAATCACTGCATGCTGCGGCAATAATGGGCAGCACCGGCGGTGGGGGAGCAGGAGGAGCAAGTACTAGTGGCAGCACGGCGGCTAGTAGCACACCCTTTGCCAGCATATCGGCGCTGGTCAGCGGACCGAGCAGTGCCCCACCACCACCAGTGGCTCCCAGTGGCTCGTCGGCAGTCAGTGGCGGCACCAGCAAGCGCAAGAAAGCCAACAAGCAAAAGCGTTGA
- Protein Sequence
- MPMPPQILPSSASISSFAKAGLLRTAEQLKIKGLCETAENADDLNDAATATITFPGAPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALLTQHGVPSGSVSLSGQLLSSSASGSSGSSAGGQQAPQTPSGLQPTPRKSRLKRSKSPDLPTGGGAGSSGGSSSSSSQQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVPGTGDDSDHENKPNKICKTEQSVASPASNSSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVHGQHGGHVTHADISGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHKSLHAAAIMGSTGGGGAGGASTSGSTAASSTPFASISALVSGPSSAPPPPVAPSGSSAVSGGTSKRKKANKQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487920;
- 90% Identity
- -
- 80% Identity
- -