Dbur012741.1
Basic Information
- Insect
- Drosophila burlai
- Gene Symbol
- -
- Assembly
- GCA_008042655.1
- Location
- VNJT01015821.1:173102-174070[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 1.3e+02 2.9 0.4 49 67 4 23 1 26 0.67 2 3 8.5e-12 1e-08 35.3 13.5 5 70 169 232 165 232 0.86 3 3 5.9 7e+03 -2.7 0.9 6 11 245 250 240 253 0.54
Sequence Information
- Coding Sequence
- ATGTCCTTTTGCTCAGCTTTGAAAGATGTGGACTTCATGCGCTGTATGCATTGCCAGAAGGTGATCCGCATGTCCCGCTGCGATCCCACCTGTCTGCTGCGCCACGTCGAGCTGGAGCACCCGAGTAAATGCACTTTGACCAGCAGGAAGTGCGCGGGCAGCTGCGAAGCCAAGTCGGAGTCATGCTGCGATAAAAGGAATAATGCTGGCGAGAATGACGAAAtcAGCGAAAAGATCAAGAGAATGCACATGCTGGCCGCAGAGCATGGGATCAGCGAGGAACGCCTCTCGCAGATCAGCAAGAAGACGGGTCTTTCCGAGGAACAGATGGCTGAAAAGGCAGAGGCATATATGAAGAAAAAGGGTTATCCAATATCCACACCCGGCTCTGGTTCATGCCAGCAAAAAAACACCACCCCGACTTGTAAGTGCTCGGAAAAGGAGCAGGCTCAGCGCAAGCAGTCTTACAGGCTCTCCATCAGGCGCTGGGCGCCGGCGGATGGTTGCATCTATTGTCCATGCTGTGGCTGTCAGCGCCGTCCGCTGATTAAGTCCGCCTCAGAGATCGTGACCTCCAAATGCTTTGCCACCTGGATAGTGGTCTGCTGGCCGTTGTGCCTGCTGCCTTGCCTCTCCTCGGATAACCAGGAGTATCTATACTGCTCCAACTGTAACACCTTTCTGGGCATTTACAATCGGGAAAAACGCTGCGTCAGGCCCAGCAAGGAGTTCGTGACTTGTTGCAGCTGTGCCACACCACCGCCCACGCCAAAGTAG
- Protein Sequence
- MSFCSALKDVDFMRCMHCQKVIRMSRCDPTCLLRHVELEHPSKCTLTSRKCAGSCEAKSESCCDKRNNAGENDEISEKIKRMHMLAAEHGISEERLSQISKKTGLSEEQMAEKAEAYMKKKGYPISTPGSGSCQQKNTTPTCKCSEKEQAQRKQSYRLSIRRWAPADGCIYCPCCGCQRRPLIKSASEIVTSKCFATWIVVCWPLCLLPCLSSDNQEYLYCSNCNTFLGIYNREKRCVRPSKEFVTCCSCATPPPTPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00618017;
- 90% Identity
- iTF_00490459;
- 80% Identity
- -