Dbun016061.1
Basic Information
- Insect
- Drosophila bunnanda
- Gene Symbol
- -
- Assembly
- GCA_008042815.1
- Location
- VNKE01005771.1:16479-24499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00021 0.015 15.6 3.4 1 23 274 296 274 296 0.98 2 11 0.001 0.074 13.4 10.5 1 23 303 325 303 325 0.96 3 11 0.00011 0.0075 16.6 6.5 1 23 331 353 331 353 0.98 4 11 0.00048 0.034 14.5 1.6 1 23 359 381 359 381 0.95 5 11 2.3e-05 0.0016 18.7 0.5 1 23 387 409 387 409 0.97 6 11 2.2e-05 0.0016 18.7 0.1 1 23 415 437 415 437 0.98 7 11 0.00013 0.0092 16.3 2.0 1 23 442 465 442 465 0.97 8 11 0.01 0.74 10.3 0.6 1 23 471 494 471 494 0.96 9 11 0.00017 0.012 15.9 0.1 1 23 555 577 555 577 0.98 10 11 0.016 1.1 9.7 2.7 1 23 699 721 699 721 0.95 11 11 0.0046 0.33 11.4 4.9 5 23 734 752 726 752 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCCGCCCAGAATCCGCCGCCCTTCGGCTATACCTGGGGCTTTGCAGACAACGGCAGCCGCAACGCCGAATCTGTCCTGGAGATATCGCCGAACATCAACTACACGGTCAGCGGGGAGTCGATGCCCTATTTGCTTAACACGGATGGATCGTTGGCCGTTCAAAAGGATGTCAAAGGGCTCACCGGTGCCGGCAATAAGAATGTCGTGCGCCGCATGTTTGTGGTAAACGATGCCTCGTTTCCCCCAGGAACACAGAGGATAATTACCGCCGGAGGATCATCGACGGTGGTGAAGAAGCAGGACGCCAATCAGCAGGTGTTGAGCCTGGACAAGAACTATCTGCTGGTGGATCCGGCcacggcagcagcggctgcagcggcagccggTGGCGATCCTTCGGTGGCCCATCATCACCACACACTAGCGAATGGAAGCATTGTCGATGCCAAGACCGGACAGACGGTACTAACCGCTggctcggcggcggcagccaaGTCGCACTTCAGCTCCATCGGAGCGCTGCATCTAACGCAAGAGGAGTGCAACGAGATCCTGATCAAGCGCGCCATCGCTGCCGGCCATCATCAGACGCACACGATCACTACTGCCGATGGGACGCACCACCATGCGTCTGGCGGGACACCAATTCAAGTACAGAAAGTAATCCAGGGACTCGAGGATAACGAGGACTCGCAGGGCGAAGCACCCAATTTAAAGTTGGAGCCAGGCACTTTGGAGCTGTCCCCGAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACCATTAAGAAGGAACGCCCGTACAGTTGTGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATCTGACAACCCACGCACGTGTGCACACAGGTGGTGAACGTCCCCACATCTGCACCCATTGCGGCAAGAGCTTCGCGCACAAGCACTGCCTCAACAcgcatctgctgctgcactcGACGGAGCGACCGTATCAGTGCCAGGAGTGCAAGAAGAGCTTCACCCTCAAGCACCATCTGCTGACCCATTCGCGTGTCCATAGCCGGGAGCGACCTTTTGTCTGCCAGGAGTGCGGGCGCGCCTTTCCGCTCAAGCGTCATCTGGTCACGCACAGCAAATTTCACGCCGGCGAGCGGCCGTACGTTTGCGAGGAATGCGGTGAGAGCTTTGCCCAGGAGAATCACCTGATTATGCACTCGCGCTTCCATGGTTCATTAAATCCATTCGTTTGCGCCGAGTGCGGAGCCTCGTTTCCACGCAAGTTCCAGTTGGTTAACCACGGACGTATTCACGGAAAGATCCCCCATTCGTGCACGGTGTGCGGCAAAGAGTTTCTACAAAAGCGAACGCTAGTTTCCCACATGAGACGCGTACACACTGGCGAGCAGGCGCATCCCTGCGTCAGCTGCGGTGAGGGCTTCCTCACCAAGGCCGAACTGCATCAACATGTGAGGACGGCGCATAATGGCGTTAATCCCAATACGAGCAGTGCCACCATCATAGCCAATCAGCAGCAGCTGCAACAGGCCCATCATCATCCCGGACAGCCACATCCACAGACCATTACTGTGGTAAGCAATCCGGCCAACTCCACGCTGCTGACTGTGTCCACTACGGATGCTAATGGCGTGGCCAGGCCACAGTTTGTGTGCCGCGAGTGCGGCAGCGCCTTCAATAGCCGAGAGGCCTTAGCTCTTCACTTGCGTCTCCACACTGGCGACAAGAGTCTGATGACCGATCTGTGCGCTTTGACAGCCGCCCTGCCGGGTCACTTCTTGAGCACAGCCAGCTTGAATCCGGGTACCGTGGTCACGGCCAACCCGAATCTAGTGGGTCAGAGCCCAGTACCCGTGCAGATTATATCGTCGACCGGACAGGTGATGTCGCAGACCACGCTGGTGCAGGCCGCCAATTCGACCCATCCGCAAGCCGTGGTCACCGCAGTGCCGACCATGCCTGTgcatggccagcagcagcacctgcagcacgtacagcagcagcagcaacagcagcaacaacagcaacagcagcagcagcacgtcGTCTCTGTTGCGCCGGCCAATAAGCCCAAGTCGCATTTCTGCGCCAGCTGTGGCAAAGGATTCGCCGCCAAGCACGGTCTGATGCAGCACAATCGCCGGCATCCGAACGGTGGATGTACGGTGCGCACCCATGTGTGTGAATGCGGAAAGGCCTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTGGAGACGAAGCCAGCCATATCGCAGCAACAGGAGGCGTCCtcggcccagcagcagcagcagcagcaggcggctgGGTCGGCCGGCGGTGGACAGCAGCCGGCGCAGGTTCAAGTGCAGATAATGCCCGATGGTCAGATTCATGGCAAGGTGATCAAGTACGAGATCTGTCGCAGTGTCCTGCCcgaggatcagcagcagcagcagcaggcggacATGGACGGGGAATAA
- Protein Sequence
- MCAAQNPPPFGYTWGFADNGSRNAESVLEISPNINYTVSGESMPYLLNTDGSLAVQKDVKGLTGAGNKNVVRRMFVVNDASFPPGTQRIITAGGSSTVVKKQDANQQVLSLDKNYLLVDPATAAAAAAAAGGDPSVAHHHHTLANGSIVDAKTGQTVLTAGSAAAAKSHFSSIGALHLTQEECNEILIKRAIAAGHHQTHTITTADGTHHHASGGTPIQVQKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNGVNPNTSSATIIANQQQLQQAHHHPGQPHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTMPVHGQQQHLQHVQQQQQQQQQQQQQQQHVVSVAPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEASSAQQQQQQQAAGSAGGGQQPAQVQVQIMPDGQIHGKVIKYEICRSVLPEDQQQQQQADMDGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00481685;
- 90% Identity
- iTF_00594698;
- 80% Identity
- -