Dboq002933.1
Basic Information
- Insect
- Drosophila bocqueti
- Gene Symbol
- -
- Assembly
- GCA_018151655.1
- Location
- JAECXF010000057.1:16660995-16663193[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.033 2.5 8.7 0.7 1 23 323 346 323 346 0.96 2 10 1.3 96 3.7 0.5 6 23 356 373 356 373 0.96 3 10 1.6e-06 0.00012 22.2 0.7 1 23 379 401 379 401 0.98 4 10 0.00051 0.039 14.4 1.9 1 21 409 429 409 432 0.89 5 10 0.00026 0.02 15.3 2.5 1 23 440 463 440 463 0.97 6 10 0.00022 0.017 15.5 0.6 3 23 471 492 469 492 0.92 7 10 0.00078 0.059 13.8 0.0 2 23 504 526 503 526 0.97 8 10 1.2e-05 0.00092 19.5 4.2 1 23 533 556 533 556 0.96 9 10 5.1e-06 0.00039 20.7 0.6 1 23 562 584 562 584 0.98 10 10 6.4e-05 0.0049 17.2 1.3 1 23 590 613 590 613 0.97
Sequence Information
- Coding Sequence
- ATGCTCGCCTGTGTGCTTTGCTTGGTTTGCTCCGATGGCGGCTACCCGCTGCTGTCCGCCGAGGGCGTCCGGTTAAACATTAAGGAGACCATCAACAAGCACTTTTCGTTTTTCGAGGTGCTCACTGTTGACGGTGATGCCGCGGTCTGCCGGGAGTGCTGGCAGTGCATCAGCAGCTTCGATGAGTTCCACCAACGGGTCTCCAGGCTTCACCAAGAGCCGGGCAGAGACGACTCAAAAAGCGTGGCTATTGAGTTCTGCGCCGAAACGGAGGAGGCCATCAATCCTCTGTTTGACGTTGAACTGGATGCCTTGGCCGAGGGCTTCTTTGACCCTAATGAAGTGAAGGTGGAGGTCAACGAGCTGCCCAAGGTGGAGCTACTCGAGGACCCAGTCAATACGGAAAGGAAAAAAGGCGCCACCAAGCGTCGGGGTTCCCAAGCCGAAGGTCTATCCCAGCCCAAGCGTCGCATTAAAAATGAAAAAATTGTGGACAGTGATTCGGATGTGCCTCTGGCGAAGTTCGTGGGCGCAGGGATAAAGACCGGGACCAACGGACCGGCAGGGATCAACGAACAGAGCAAGGGACAGCCGATGCGGAGGAGCACGAGACGTGGTCGCCCACCAAAGGCCAAGCCAGTGACTCTTGCGTCTCCCAAAAAAGAACTTGAGGCGGATGAAGAAGACCACGACGTAAATTTCCTGGATTTCCTGACCGCAGATCCCGTTTCGGGCACTGAAGACAGCTCCAGTTCCTCCAGCGAAAGCAGTGACGATGACTCGGACTACAGCCTGCCGGTGGAACGGTATGCCAAGATCCCTAAGCGGGTCGTTGTGAAGCCCAAAAAATACCGCAAACGCGAGAAACCCTTGGTCCCACCCAACCGGATGAGTCGTGAGGAGATCGAGCAACGCAAACAGCAGCAGGAAGTCTACGATAAGATTATCCTGCAGTTCTTTAAGAACTTCTCCTGCCACATTTGCAACCTCCTCGTTCAGAACCTTTCGGACATGCGACTCCATCAGCGGGATGCCCACAACATAAAATCGGGCTACATCCAGTGCTGCGGGAAAAAATTCCACAGACGCAAGATTTTGGCGGAGCATGTGTTGGTCCACAAAAATCCGGAACACTTTATGTGCTCTCATTGCGGCCGGGTGTTCCCAGATTCTCGCTCTCTGGAGGTCCACGAGCAGACGCACACGAACCCGGAGAAGCCGATGTTCCATTGCGAAAAGTGCCCCAGGAGCTTTACCAGCAAGATGTCCCTTGAGTATCACTCTATCGCCAGGCACGTACCCAAGTCCGAGTTCAAATACAGCTGTCCAGAGTGTAACAAGAAGATTCCCACGAAGCGCAAGCTGAATGAGCATCTTCGCCACAAGCACAACCCGGAAACGGCTATAATCTGCGATAAGTGCGGCAAAACATTGCCTCCCAAATCGAGTCTCAAGAAGCACCACGAACTGGAACATTCCGAGGAGCCACATCCGAAGCCCGATCCCGTGCAGTGTGAGATCTGCGGAGCCTGGCTGAAAAATCCGTCCGGGCTGAAAAAGCACATGAGCACTGTGCACGAGCCGAAGGACAAGGAGCACCGCTGTCCCATATGCAACAAGACGTCCGTCAATTCCACATCCCTCAAGCGTCACATCAGACACAACCACCAGTGTGAGCGGAAGTTCAAGTGCGGATTGTGCGAGAAGGCCTTTAAACGGCCGATGGATCTCAGGGAACATACGTCCACGCACACCGGCGAGGTGCTCTACACCTGCCCCAACTGTCCCATGACGTTCTTTTCCAACGCCAACATGTACAAGCATCGCCAGCGACTCCATCGCGCCGAATGGGAGGCGGATCGGAAGAAGCCGCTGCCGCCGAACATCATGAAGCTATCGCAGGGCGCCACCACAATTAAGATTACCTGA
- Protein Sequence
- MLACVLCLVCSDGGYPLLSAEGVRLNIKETINKHFSFFEVLTVDGDAAVCRECWQCISSFDEFHQRVSRLHQEPGRDDSKSVAIEFCAETEEAINPLFDVELDALAEGFFDPNEVKVEVNELPKVELLEDPVNTERKKGATKRRGSQAEGLSQPKRRIKNEKIVDSDSDVPLAKFVGAGIKTGTNGPAGINEQSKGQPMRRSTRRGRPPKAKPVTLASPKKELEADEEDHDVNFLDFLTADPVSGTEDSSSSSSESSDDDSDYSLPVERYAKIPKRVVVKPKKYRKREKPLVPPNRMSREEIEQRKQQQEVYDKIILQFFKNFSCHICNLLVQNLSDMRLHQRDAHNIKSGYIQCCGKKFHRRKILAEHVLVHKNPEHFMCSHCGRVFPDSRSLEVHEQTHTNPEKPMFHCEKCPRSFTSKMSLEYHSIARHVPKSEFKYSCPECNKKIPTKRKLNEHLRHKHNPETAIICDKCGKTLPPKSSLKKHHELEHSEEPHPKPDPVQCEICGAWLKNPSGLKKHMSTVHEPKDKEHRCPICNKTSVNSTSLKRHIRHNHQCERKFKCGLCEKAFKRPMDLREHTSTHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMKLSQGATTIKIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00492398;
- 90% Identity
- iTF_00492398;
- 80% Identity
- -