Basic Information

Insect: Drosophila bocqueti
Gene Symbol: -
Assembly: GCA_018151655.1
Location: JAECXF010000001.1:13741863-13745230[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00064 0.049 14.1 1.0 3 23 182 203 181 203 0.97

2 16 0.0029 0.22 12.0 1.1 1 23 220 243 220 243 0.92

3 16 0.00098 0.075 13.5 3.0 1 23 314 337 314 337 0.96

4 16 0.0037 0.28 11.7 1.7 2 23 393 414 392 414 0.95

5 16 1 77 4.0 0.5 1 20 529 548 529 550 0.84

6 16 0.0063 0.48 10.9 0.7 1 23 559 581 559 581 0.95

7 16 0.00032 0.024 15.0 1.0 1 23 588 611 588 611 0.96

8 16 0.0003 0.023 15.1 0.3 2 23 620 641 619 641 0.96

9 16 0.00078 0.059 13.8 0.1 2 21 668 687 667 692 0.92

10 16 0.0017 0.13 12.8 1.0 1 23 728 751 728 751 0.96

11 16 4.4 3.3e+02 2.0 1.3 1 21 758 778 758 779 0.91

12 16 0.011 0.81 10.2 0.1 1 23 788 811 788 811 0.96

13 16 2.4e-06 0.00018 21.7 0.5 1 23 832 855 832 855 0.97

14 16 0.086 6.6 7.4 0.1 1 23 865 887 865 887 0.92

15 16 8.2e-05 0.0063 16.9 2.0 1 23 893 915 893 915 0.99

16 16 3.3e-05 0.0025 18.1 0.9 1 23 921 943 921 943 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00064	0.049	14.1	1.0	3	23	182	203	181	203	0.97
2	16	0.0029	0.22	12.0	1.1	1	23	220	243	220	243	0.92
3	16	0.00098	0.075	13.5	3.0	1	23	314	337	314	337	0.96
4	16	0.0037	0.28	11.7	1.7	2	23	393	414	392	414	0.95
5	16	1	77	4.0	0.5	1	20	529	548	529	550	0.84
6	16	0.0063	0.48	10.9	0.7	1	23	559	581	559	581	0.95
7	16	0.00032	0.024	15.0	1.0	1	23	588	611	588	611	0.96
8	16	0.0003	0.023	15.1	0.3	2	23	620	641	619	641	0.96
9	16	0.00078	0.059	13.8	0.1	2	21	668	687	667	692	0.92
10	16	0.0017	0.13	12.8	1.0	1	23	728	751	728	751	0.96
11	16	4.4	3.3e+02	2.0	1.3	1	21	758	778	758	779	0.91
12	16	0.011	0.81	10.2	0.1	1	23	788	811	788	811	0.96
13	16	2.4e-06	0.00018	21.7	0.5	1	23	832	855	832	855	0.97
14	16	0.086	6.6	7.4	0.1	1	23	865	887	865	887	0.92
15	16	8.2e-05	0.0063	16.9	2.0	1	23	893	915	893	915	0.99
16	16	3.3e-05	0.0025	18.1	0.9	1	23	921	943	921	943	0.97

Sequence Information

Coding Sequence: ATGACGCGGACGTGCAGAATCTGCGGGGGCGCTGACGGGCGCTACTGGATTGAGACGCCCGTGGAGAAATATGCGGAGAAGACCTTCGGACAACTGCTTGTCGAGCTAGCGAGAATAGAGGTTGCTATGGCCCAGGCGGAGAAGCTTCCCCAGTGGCTGTGCTCCGCCTGCGCCCAGAAGCTGGAGACCACCTACGACTTTGTGCTGCAGGCGCGACAAACGCACGAGCTGTGGCTGCGCAGGCTGAATGACGTCTCTGGGGACGAAATGCTAGGTCCAGAGGCCTTAGAGGCTCTCAGGGAGACACCCATTCATTTGTTCGAAATCGAGGGCGTGACCATCAAGTCCGAGGTGCTGGAGCCGCCGATGGAGCTGGGAAGAGGCGTGGCAGCCGCCGATCCTCTGGTACGCTCGCGTTTCGTCAAGCGCAGCATCATGCACTTCAGCGACTCGGACGAAGGCGACCAGGACGATGTCCCGTTGGCGCAGCGCGTACTTTCGCCAGCCCCACAGCCCGTCAGCGCAGAGGAGAAGCACAACCTCTGCGAGGTGTGCAACAAGGCGTTTCGCTTCGTCACCAACCTGTACCGCCACAAACAGCGGGATCATGGGCTGCCCGCCAAGCCGGGCGAGGAGATAGACGACGACGACAACTACTACAAGTGCGACCAATGCGACAAAGCGTACAAGTACGTGATGGCGCTGGTAAAGCACAAGCACGCAGAGCACGGGGCAAGTCTATTGCCTGCGAAGACGTCTAGGCGGAAGATGCCTGGCAGGCCTTCGGTGATGCCCGGCGATGCGAGTCCGTCTAGTCCAGCCTCCACCTCGGGAACCTCTACGCATCGCAGTCGCAACAACACTGACGCCCTGGTGCACAGCATCATCAAGGGAGTCGAACTCTCGGACGAGGACGGTAACTGCAGCGTGGACAACTACTACAAGTGCGATGAGTGCAGCAAGTCGTACAAGTACATTGTGAGCCTGATTAAGCACAAGCACCGGGAGCACGCAGATCAGGACAAGAAGCAATCTGACTCTGAGGACGATCTGCCGCTGGCCTCCACATCTGCTGCCTTGGGCGGCTCGGCATCCTCAGCAAAACCCTCGAGGATCAATCGCCGCGTCGAGGACTTCGACCCGCACAGCTGCGAGCCGAATGGGGCCAAGGAAATCAAATGCATGATCTGCCTCCGTCGGTTCACCAGGTTGCGCGAGCTGAGGGATCACCTGCATGCTCATCCCACTGACTTCGACTTCGAGGCCCACGGCGAGCCCATCGAGCGCATAGCCGAGGGCTTTTTCAAGACTGCCGTCGAGTCTACGAAGGAGGGCCTGAAGCGTCGCATATTCCGGGATCTCAGGCTGGGCGTGTACGGCCGCTACTACTCCATAACGAACCAGGCGCGCTACGAAATGAATATGGACAGCTCGGACACGGACAGCGAGGGTGAGGGCGAGGCGGACGTTGTCCTGCGGCGCAGCTACGCCTGCGAGCTCTGTGACTCCCCGGAGGCTAGGTGGCCGCGGAAGTACCTGCTGCACCAGCATCACCGGCAGGAGCACACCTGGCTGGAGGCCCCCTATGTCTGCCAGCGCTGCGACTCGCGTTTCCTCAGCGCCCAGCTGCTGGAGCATCACACCAGCCAGCTGTGCCAGAATACACTGAAGCGCTTCCAGTGCGATAAGTGTCCTCAGCGCTTCTTTTGGCGGCGCAACCTACGCGCCCATCTTGTCGAGCACAAGAGCAAGCAAGAGTACTTTTCGTGCGATCAGTGCTCCCGCAGCTTCCAGGACAAGAGCGCCGTTACCAAGCACAAGTTGATGGTGCACCGGGATGGCAACTCACAGCTCATTCCATGCCGCTGGTGCACCCGCACCTTCTACCGCCCAGGTCTGCTGTACAAGCACGTGCAGCGGCACGGCTTCACCGGCCAGGATTTGCCGCTGGCCGAGACCCTGCTGGCGGACGCCTCCAAGCATGCGGGTCACAAGAGTATCCAGTGTAAAGTGTGCGATATTCACTTCATCAGCGTGGCGGATCTGCGTCGCCACATCGCCATGCAGGGCGGCCACAGCGACCTGCCATCGGCGTACATGATAAGCACTGAAACCGGCTTTGAGCTCCTGCTGGAGGATACGGACGACAGTGATGAGGAGGGTTTCTCCGCCAGCAGAACCTACAGTTGCGACCTCTGCGAGCTGAGCTTCCGACGCCGCCGGGAGATGAGCGAGCACCAGTACTCCCTGCATAGCTTCGACAAGCTGCCACATTCCTGCGAGCACTGCATCTTCAAGACGGTGGATAAGTCCATGCTGGATCAGCACTTGAGCAGACAGTGCAGGAACAATGACAAAAAGTTCGTCTGTCCGCGCTGTGGCTACAGGTTCATGTGGGAGGAGAATCTCGCCCTGCATCTGGCCACACAGCATCCAAAGCAGCCCGCCATGCCGGAAAGTCAGCCGCCGTCACGAAGGAAACGACGCTTCCGCTACCAGTGCCCCCACTGCTGGCGTTCTTTTGTCGTTCAGCCCAGCCTGGAGAAGCACATCCGGGACATGCACGTGGCCAAGAAGAACCCGGGTAAGAAGTATCTCTGCTCGCTGTGCGGCCTGGAAGCCCTGACGCCCAACAAACTCAACATCCACATGCGGCGCCACATGGGCGAGAAGCCGTTTAAGTGCGATCTCTGCGAGATGCGCTTCACGGTCTACTACGAGCTGAAGGTGCACCGCCGGAAGCATACGGGCGAGCGGCCCTATCAGTGCACCTTCTGTGCCAAGGAATTTGCGCGGCCGGACAAGCTGCGGCGTCACGTTTTCATGCACAACGCCAAGTCATAG
Protein Sequence: MTRTCRICGGADGRYWIETPVEKYAEKTFGQLLVELARIEVAMAQAEKLPQWLCSACAQKLETTYDFVLQARQTHELWLRRLNDVSGDEMLGPEALEALRETPIHLFEIEGVTIKSEVLEPPMELGRGVAAADPLVRSRFVKRSIMHFSDSDEGDQDDVPLAQRVLSPAPQPVSAEEKHNLCEVCNKAFRFVTNLYRHKQRDHGLPAKPGEEIDDDDNYYKCDQCDKAYKYVMALVKHKHAEHGASLLPAKTSRRKMPGRPSVMPGDASPSSPASTSGTSTHRSRNNTDALVHSIIKGVELSDEDGNCSVDNYYKCDECSKSYKYIVSLIKHKHREHADQDKKQSDSEDDLPLASTSAALGGSASSAKPSRINRRVEDFDPHSCEPNGAKEIKCMICLRRFTRLRELRDHLHAHPTDFDFEAHGEPIERIAEGFFKTAVESTKEGLKRRIFRDLRLGVYGRYYSITNQARYEMNMDSSDTDSEGEGEADVVLRRSYACELCDSPEARWPRKYLLHQHHRQEHTWLEAPYVCQRCDSRFLSAQLLEHHTSQLCQNTLKRFQCDKCPQRFFWRRNLRAHLVEHKSKQEYFSCDQCSRSFQDKSAVTKHKLMVHRDGNSQLIPCRWCTRTFYRPGLLYKHVQRHGFTGQDLPLAETLLADASKHAGHKSIQCKVCDIHFISVADLRRHIAMQGGHSDLPSAYMISTETGFELLLEDTDDSDEEGFSASRTYSCDLCELSFRRRREMSEHQYSLHSFDKLPHSCEHCIFKTVDKSMLDQHLSRQCRNNDKKFVCPRCGYRFMWEENLALHLATQHPKQPAMPESQPPSRRKRRFRYQCPHCWRSFVVQPSLEKHIRDMHVAKKNPGKKYLCSLCGLEALTPNKLNIHMRRHMGEKPFKCDLCEMRFTVYYELKVHRRKHTGERPYQCTFCAKEFARPDKLRRHVFMHNAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00548234;
90% Identity: iTF_00524559;
80% Identity: -