Dboq001493.1
Basic Information
- Insect
- Drosophila bocqueti
- Gene Symbol
- -
- Assembly
- GCA_018151655.1
- Location
- JAECXF010000057.1:6212277-6220260[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.1e-12 2e-08 33.8 0.0 1 40 664 704 664 707 0.90 2 4 5e-14 1.1e-10 41.0 0.1 2 39 719 756 718 759 0.94 3 4 1.2e-17 2.5e-14 52.6 0.0 1 45 773 818 773 818 0.98 4 4 1.4e-19 3e-16 58.8 0.0 1 43 825 868 825 869 0.97
Sequence Information
- Coding Sequence
- ATGGGAGTGGAGGTGGATGGAGGTAGTAGAGATGTAGAGGGCGAGGGCCATGGCCTCTTGCGCACCGCCGAACAGCTAAAGATCAAGGGCCTCTGCGAAACCGCCGAGAATGCAGATGACTTGAACGACGCGGCCACAGCAACGATCACAGTGTCGGAGAACATTCAGCAGGCGGTTGTGGGAAACATTGTGAATGCAACCATAGTTCCTGGAGCTCCTTCGCCCTCCTTGGAACAGCAACACCACCAGTCACAGGACCAGCAGCAGCAGGTTCATGCCCAGCAGCAGCAAATCAACGCCGGCTTGCTGACACAACACGGAGGAGGAGTGCCCAGTGGCAGCGGCAGTGGTGGTGTTTCCCTCTCCGGACAATTGTTGAGCTCCGCGGCGAGCGGCACTAGCGGCAGCGGCAGCTCCGGTTCCGGCGGACAGCAGACTTCACTGACGCCATCCTCCGGCGGCCTGCAGGCGACGCCACGAAAGTCACGGCTAAAGCGTTCCAAGTCGCCGGATTTGCCGACAGGTTCTGGAAGCTCGGGTGGCAGCTCACAGTCACAGCAGCAACCGCAGCCGGCGCACCACCATCCCACCCACCAGACGATTCTCATCCAGGGCCAGAATCCCACCTCGATTGTTAGCCTGCAGCAGACGGCCGACGGCAACTATATACCGGTGGGAGCAGGAACTGGCGACGAGTCGGACACCGAGAACGATCACGATCACGAGCACGAACACGAGCATATCCACGGACACGGACACGGACACGGACATCCACACGGAGGACACGGAGGACACGGCCACAGTCACAGTCACAGTCACGATCACGACCACGATCACGACGATCACGAGCTCGAGAATAAACCGAACAAGATCTGCAAGACGGAACATTCGGTGGCATCGCCGGCGGCGTCCAATTCATCCAGCGCCAACTCAAACAATGCAGCGGGCGTGAGCGGCGGCGTGTCCACCACCACCACCACCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCCCAGCAAATACATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCACCACACCGGCGACGAGAGCAACTCGAATCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGCATGGCCAACATGGGGGACACGTGACGCACGCCGATATTGGCGGTGCCACAGTCATGGAGATCGATCCGAGCCAAATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGACATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCACACGATCAGAAGGAGCCGCACTATACGAATTTGGACCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCGGGGCCAGGTGGTGCTGGTGGTGGTGGGGGCATGAGTGGTGGGGCTGGCTCTGGCTCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGCTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGACGGGAGGGCATCCGCCTTGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGCGCCGAGTTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGACCGAGGCCCTCAACTCTGTGCGTGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTTTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAACACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGTTGCACATGTTGCAGCAACAGTTCCCGTACAGCCCGTCGCCTCATCCGCCAACGCCGCAACATCACAGCACGCCGCAGCACCATAGCTCGGCGCAGGGGCCGCCGACGCCGCAGCACATGCAGCAGCAGCAACAGCACGTGGTGCATATGCAACAGCAGTCGCCCCATCCGGGCCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGTAGCCAGGTGGTGCACAGCCAACAGCAGCAGCAGCAGCAGCAGCTTCAGCAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- MGVEVDGGSRDVEGEGHGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPSLEQQHHQSQDQQQQVHAQQQQINAGLLTQHGGGVPSGSGSGGVSLSGQLLSSAASGTSGSGSSGSGGQQTSLTPSSGGLQATPRKSRLKRSKSPDLPTGSGSSGGSSQSQQQPQPAHHHPTHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHDHEHEHEHIHGHGHGHGHPHGGHGGHGHSHSHSHDHDHDHDDHELENKPNKICKTEHSVASPAASNSSSANSNNAAGVSGGVSTTTTTTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQGPPTPQHMQQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00609091;
- 90% Identity
- -
- 80% Identity
- -