Dboc015231.1
Basic Information
- Insect
- Drosophila bocki
- Gene Symbol
- -
- Assembly
- GCA_008042715.1
- Location
- VNJY01002318.1:33447-40645[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-12 1.8e-08 33.8 0.0 1 40 657 697 657 700 0.90 2 4 4.3e-14 1e-10 41.0 0.1 2 39 712 749 711 752 0.94 3 4 1e-17 2.4e-14 52.6 0.0 1 45 766 811 766 811 0.98 4 4 1e-19 2.4e-16 59.0 0.0 1 43 818 861 818 862 0.97
Sequence Information
- Coding Sequence
- ATGGTGAGGGCGAGGGCTATGCGggtggtgtgtgtgctggtgcTGGGTGACAACAGTGGACAGTGGACGGGCCTCTTGCGCACCGCCGAACAATTAAAGATCAAGGGCCTCTGCGAAACCGCCGAGAATGCAGATGATTTAAACGACGCAGCCACAGCAACGATCACAGTATCGGAGAACATTCAGCAGGCGGTTGTTGGAAACATTGTGAATGCCACCATAGTTCCTGGAGCAGCTTCGCCATCCTtggaacagcaacagcagcaccaggcACAGGACCAGCAGCAGGTTCAtgcccagcaacagcagcagcagcaaatcaACGCCGCCTTGCTGACGCAACACGGAGGAGTGCCAAGTGGCAGCAGTGGTGTTCCCCTATCCGGACAGTTGTTGAGCTCCACAGCCAGCGGCAGTAGCGGTAGCTCTGGTTCCGGTGGACAGCAGACTTCACTGACGCCATCCGGTCTGCAGGCGACGCCACGCAAGTCCCGGCTAAAGCGATCCAAGTCACCGGATTTACCAACAGGATCTGGAAGCTCTGGTGGCTCAAGTAGCTCACAGtcacagcaccagcagcaaccacaGCCGGCACACCACCATCCCCACCAGACCATTCTCATCCAGGGTCAGAATCCCACCTCGATTGTTAGCCTGCAGCAGACGGCCGACGGCAACTATATACCGGTGGGCGCAGGAACTGGCGACGAATCGGACACCGAGAACGATCACGAGCACGAACACGAGCATATCCACGGGCACGGGCACGGACACGGACATCCACACGGACACggccacagtcacagtcacagtcacgaCCACGATCACGAGCTCGAGAATAAACCGAACAAGATCTGCAAGACGGAACAGTCGGTGGCATCGCCGGCATCCAATTCATCGAGCGCCAACTCAAACAATGCAGCGGGCGTGAGCGGCGGCGTGTCCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCCCAGCAAATACATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCACCATACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACCTGGCAGCTGCTGCCCAGCAGCATGCTCTCAaccaggcccagcagcagcagcagcagcagcatgcccATCACcaagcccagcagcagcaccagcaacagcagcaccagcagcagcaacagcagcagcagcagcaacaacagcagcaacagcaacagcagcatcttCATGCCCAGCAGTTGCAGGcccagttgcagcagcaacagcagcagcaacaccaccagcagcaacagcaggcggcagcagcagcggccgcagctgctgcaggtgtGCATGGCCAACATGGGGGACACGTGACGCACGCCGATATTGGTGGGGCCACAGTCATGGAGATCGATCCGAGCCAAATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGACATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCACACGATCAGAAGGAGCCGCACTATACGAATTTGGATCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCGGGGCcaggtggtgctggtggtggtgggggcATGAGTGGTGgggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGTTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGACGGGAAGGCATCCGCCTTGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAGGCAAGCGCCGAGTTTGGCATACCAACAGgaacactTTATGGACGCTGCAAGCGGGAGGGCATTGAGCTATCGCGTTCGAATCCAACGCCCTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTGCGTGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGTTGCACATGTTGCAGCAACAGTTCCCGTATAGTCCGTCGCCGCATCCGCCAACGCCGCAGCATCACAGCACGCCGCAGCATCATAGCTCGGCGCAGGGGCCGCCCACGCCGCAGcacatgcagcagcaacagcacgtGGTGCATATGCAACAGCAGTCGCCCCATCCGGGTCACCATCCGCAGCACATGCAGCAGGATGTGGTCACATCGAGCAGCCAGGTGGTGCacagccaacagcagcagcagcagcagcttcagcagaTCTATCAGCACCACGGGACACCTGAGCGTAGTTGA
- Protein Sequence
- MVRARAMRVVCVLVLGDNSGQWTGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAASPSLEQQQQHQAQDQQQVHAQQQQQQQINAALLTQHGGVPSGSSGVPLSGQLLSSTASGSSGSSGSGGQQTSLTPSGLQATPRKSRLKRSKSPDLPTGSGSSGGSSSSQSQHQQQPQPAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHEHEHEHIHGHGHGHGHPHGHGHSHSHSHDHDHELENKPNKICKTEQSVASPASNSSSANSNNAAGVSGGVSTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAAQQHALNQAQQQQQQQHAHHQAQQQHQQQQHQQQQQQQQQQQQQQQQQQHLHAQQLQAQLQQQQQQQHHQQQQQAAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSAQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00619072;
- 90% Identity
- iTF_00594628;
- 80% Identity
- -