Dbir012068.1
Basic Information
- Insect
- Drosophila birchii
- Gene Symbol
- ttk
- Assembly
- GCA_008042755.1
- Location
- VNKA01002202.1:270178-273985[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-19 6.6e-16 57.8 0.0 2 45 375 419 374 419 0.97
Sequence Information
- Coding Sequence
- ATGTCGGTGCAGCAGTTCTGTCTGCGGTGGAACAACCACCAGCCGAACTTCATCTCGGTGTGCTCCTCCCTGCTGCACAATGGCACCCTGGTGGACGTCACCCTGGCCGCCGAGGGTCGTCAGCTGCAGGCGCACAAGATAGTCCTGTCCGCATGCAGTTCATATTTTCAGGCTTTGTTCACCACAAATCCGTGCCAACATCCAATTGTTATCCTCAAGGACGTGCAGTACGATGACTTAAAGACCATGGTCGACTTTATGTACTATGGCGAGGTGAATGTGtcgcaggagcagctgccgcACATTTTAAAGACGGCCGAAATGCTGAAGATCAAGGGTTTGGCGGAGATGCCAACGGATCCGGCCAATCTAACCAAATCCGATAGCAAGTCCTCCAGTGACGGCACCGACGCCGGCACCTCGCCTGCCACAAGGCGAAAGCGGCTGCGCAAATCCTCGAATAACGGTTCTGGCGAACGCAACAATGCGGAGGAGCAGCATCACAACAGCTCTCTGGACGCAGGCAGTGGCACCGGCAACGCCGGTCTCAGTCTCGCCCAAATGAGTCAGATGTCGTTCGGCGCTGGCGGTGGCCTGGCCGGTCATTCGCTGCACGCGGCTAAGCTGCTAAAGGAATCTGCAAACGccgagctggagcagcagccgcaggatTCGGATCTGGACGACGGCCATGGACACATACATATGCAAATTAAACCCGAAGTGGATATTGGCGGCGTGAATCAAACGATGCCTCTGGACATCTCTGGCGCCACCACCCCATCCGAGCATGATGCGCCCAACTCTCAGTCGTCGCACTCGGGTCTGCAATGGACAGTTGTCGATTCCAATTATCCGCGCTTCTCCCTGCCCGCCTGCCACGGGTATGCGACGGCAGCCCAAAACCTATCCCCCACCTCGCCCAACGAATCGAACATGGTGCAATCAGTGTACAGCCAAGGACCGACGCCCACCCAATCGCCGGCGCATGCAGGCGGAGCGGGTGTcgctggtggcggcggcggcggcaatgcGGGCAACACCAATGCTGGCAACGGGAACGCCGCGGGAGCGGGAGCCAACCAAGTGGTCAAGCGCAAAAGATCTGTGAATCCGCAGGGCGATGAGAACTTTATCCGTGCCCTGGAGGCGGTGCGAACAGGTGGCATTGGTTTCTGCAAAGCTGCCCGGCTGTATGGCGTCAACAATCGGACATTGTGGCTGGAGTACAAGAAGCGGGGCTACCCGGTGTCGCGCCCGAGCATCAAGGCGCGCGTGGTCAAGCAGGAGCCGAATCTGTCGCCGTCGCCCACTCCGTCGACGAATCCCGGCGACGACACCCCCGAAACACTTGGCATGCAGATACCACCGCAGGCGGAAACACCGACGCCGTCCTCGCTCATGTGCACACCCCATCACGCAAGcatcggcggcggcagtggagcTGGAAGTCTGCCCGGTGCAGGCAACTCGCATCCGGCCATCGGTGTTATGAGCCTATTCGATGCGCGGTACATGGACTCGCCGGGCAATGTGCACGCAATGTCGCGGCAGCGCTACATCGACGCCACCGGCGGTGGGGCGGGCACTGGTGCGGGAACGGGCGCGGGTGCCGGCACCATCAACGTCAATCCGACCACCGCCATGAATCTACAGAGTATTAACTTCAACTCGATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSSDGTDAGTSPATRRKRLRKSSNNGSGERNNAEEQHHNSSLDAGSGTGNAGLSLAQMSQMSFGAGGGLAGHSLHAAKLLKESANAELEQQPQDSDLDDGHGHIHMQIKPEVDIGGVNQTMPLDISGATTPSEHDAPNSQSSHSGLQWTVVDSNYPRFSLPACHGYATAAQNLSPTSPNESNMVQSVYSQGPTPTQSPAHAGGAGVAGGGGGGNAGNTNAGNGNAAGAGANQVVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDTPETLGMQIPPQAETPTPSSLMCTPHHASIGGGSGAGSLPGAGNSHPAIGVMSLFDARYMDSPGNVHAMSRQRYIDATGGGAGTGAGTGAGAGTINVNPTTAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00492153;
- 90% Identity
- iTF_00492153;
- 80% Identity
- iTF_00488734;