Dbip007664.1
Basic Information
- Insect
- Drosophila bipectinata
- Gene Symbol
- -
- Assembly
- GCA_018153845.1
- Location
- JAECYF010000050.1:2853505-2854875[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.4 1.3e+04 -3.8 0.0 37 48 61 72 60 74 0.75 2 6 0.00016 0.86 9.6 0.8 5 53 208 256 205 257 0.84 3 6 6.1e-07 0.0033 17.4 0.2 22 45 281 304 277 316 0.86 4 6 0.00039 2.1 8.4 0.7 12 45 327 360 317 368 0.76 5 6 0.056 3e+02 1.5 0.4 16 31 360 374 357 391 0.71 6 6 0.12 6.4e+02 0.4 0.1 20 43 392 415 381 420 0.77
Sequence Information
- Coding Sequence
- ATGGAGCAATCGGATCTGTGCCGTGTGTGCAATATCCCATCGGGAAATTGCTTGCCACTCTTCACGCCGCATCTGGTTTCTGGCGAACTAACGACTTTAGCCAAGATTCTGAGCTACTGCAGCGGCCTGACTCTCCTGGAGACGGAGGACTACCTGCCCCAACACATATGCCAGGGATGTTCGGTTAAGCTGCGGCGGTACTGGGAATTCAAGCGCGTCGCTCTGAAGACGGACGCGGTTCTCCGACAACTTTATAAAGGTCTGAAAGTCAAGGAAAAATATTACTATGTGTCGGGAGAGGAGGTGGGGGAGGAGCAACATATGGAAGAGGACGATGAAGCTATAGACCAGGAGTTTGAGCTAGATCAGGAACTGGTTCACGAAGATGATTTTGTGGTGGTGAACGAGGCAAGCCAAGAGGATGAGGATGAGCTAGAGATTAAGGTGGAGGAGGAGTTGTCAGCCAAGCTTTGGAAGCGAAGTATTGCCGATCTAGAGGTCGACGATATTCAGGATGTCATCATCGAAGAAACTAGCCACAGCCAGCTCTTCATGGAGGAGGAGGAAGATACCCAAGATAACTATGAGGAAATTGGGGAACCAACTGAAGAGCAACCACAGGAGGCGAAAACTCAACCTTCGGGCAATAGAAGCCGCCGCAAGAAGACCACTAATCCATCACTAAAGTGTCCGATCTGCGAGAAGCAACTGAGCACTAGCAACTCCTTCAAGTACCACATGCAGCTGCACAGCGACCAGAAGCCGTATGTCTGCCAGATATGCGGGGAGTCCTTCAAGACCCGCAACGCCCACGACGGGCATGCCACCCTGCACGATCCAAACAATCCAAATACCTGCCCCACCTGCGGCAAGGTGTACCGTCAGGCGTCATCGCTGCGCACCCACCTGCTAACCCACAGCGGCATCAAGCCGTTCGAGTGCGGTGTCTGCGGCAAGCGACTCACCCAAAAGTCCGGTTACAAGAAGCACATGCTCACCCATACCGGCGAGAAGCCGCACGAATGTGATATCTGCAAACGTACCTTTCGCTATTCAAGCAATCTGATTGCCCACAAACGCAGCCACAGCCAGTCCAAGCCGCATCATTGCCTGGTCTGCCAGAAGCGGAGCTTCGGCACCACCACCGAACTGAATCGCCACATGCTCGTCCACAGCAGCGATCGTCCGTTCGAGTGTCCGGAGTGCAGCAAGACCTTCAAACGCCAGGTCTCCCTCACCCTTCACATCCAATCGCACAAGAACCCAAATGCCGGAAAGATGAAAAAAAAGAAGGAATGGGTGGACCTTTAA
- Protein Sequence
- MEQSDLCRVCNIPSGNCLPLFTPHLVSGELTTLAKILSYCSGLTLLETEDYLPQHICQGCSVKLRRYWEFKRVALKTDAVLRQLYKGLKVKEKYYYVSGEEVGEEQHMEEDDEAIDQEFELDQELVHEDDFVVVNEASQEDEDELEIKVEEELSAKLWKRSIADLEVDDIQDVIIEETSHSQLFMEEEEDTQDNYEEIGEPTEEQPQEAKTQPSGNRSRRKKTTNPSLKCPICEKQLSTSNSFKYHMQLHSDQKPYVCQICGESFKTRNAHDGHATLHDPNNPNTCPTCGKVYRQASSLRTHLLTHSGIKPFECGVCGKRLTQKSGYKKHMLTHTGEKPHECDICKRTFRYSSNLIAHKRSHSQSKPHHCLVCQKRSFGTTTELNRHMLVHSSDRPFECPECSKTFKRQVSLTLHIQSHKNPNAGKMKKKKEWVDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00539317;
- 90% Identity
- iTF_00566250; iTF_00488179; iTF_00580132; iTF_00539317; iTF_00539122;
- 80% Identity
- iTF_00488179;