Basic Information

Insect: Drosophila bipectinata
Gene Symbol: -
Assembly: GCA_018153845.1
Location: JAECYF010000041.1:7427990-7433674[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.11 8 7.0 0.4 1 23 1290 1313 1290 1313 0.94

2 13 6.3 4.7e+02 1.4 0.2 1 23 1467 1489 1467 1489 0.91

3 13 0.00014 0.011 16.1 2.7 2 23 1492 1513 1492 1513 0.97

4 13 5.4e-05 0.0041 17.4 0.2 3 23 1521 1541 1519 1541 0.98

5 13 4.5e-07 3.4e-05 23.9 4.1 2 23 1548 1569 1547 1569 0.97

6 13 4.3 3.2e+02 2.0 0.4 5 23 1582 1600 1580 1600 0.96

7 13 1.1 79 3.9 5.4 3 23 1607 1628 1605 1628 0.93

8 13 0.027 2 8.9 0.2 2 23 1639 1659 1638 1659 0.96

9 13 1.4e-05 0.0011 19.2 0.6 1 19 1665 1683 1665 1687 0.95

10 13 2.7e-05 0.002 18.3 0.4 1 23 1695 1717 1695 1717 0.98

11 13 8.1e-05 0.0061 16.8 7.6 1 23 1723 1745 1723 1746 0.96

12 13 0.00036 0.027 14.8 6.6 1 23 1751 1773 1751 1773 0.98

13 13 0.0021 0.16 12.4 6.1 1 23 1779 1801 1779 1802 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.11	8	7.0	0.4	1	23	1290	1313	1290	1313	0.94
2	13	6.3	4.7e+02	1.4	0.2	1	23	1467	1489	1467	1489	0.91
3	13	0.00014	0.011	16.1	2.7	2	23	1492	1513	1492	1513	0.97
4	13	5.4e-05	0.0041	17.4	0.2	3	23	1521	1541	1519	1541	0.98
5	13	4.5e-07	3.4e-05	23.9	4.1	2	23	1548	1569	1547	1569	0.97
6	13	4.3	3.2e+02	2.0	0.4	5	23	1582	1600	1580	1600	0.96
7	13	1.1	79	3.9	5.4	3	23	1607	1628	1605	1628	0.93
8	13	0.027	2	8.9	0.2	2	23	1639	1659	1638	1659	0.96
9	13	1.4e-05	0.0011	19.2	0.6	1	19	1665	1683	1665	1687	0.95
10	13	2.7e-05	0.002	18.3	0.4	1	23	1695	1717	1695	1717	0.98
11	13	8.1e-05	0.0061	16.8	7.6	1	23	1723	1745	1723	1746	0.96
12	13	0.00036	0.027	14.8	6.6	1	23	1751	1773	1751	1773	0.98
13	13	0.0021	0.16	12.4	6.1	1	23	1779	1801	1779	1802	0.96

Sequence Information

Coding Sequence: ATGGTCGACAACAGTGTCCAGTGCCCCGTGTGCACCCTGTACCTGCATGCGGGCATGAATCTCTCCGATCACTTGGAGACTCATCCCAAGGAGCAGGTGATCAAGGCACTGGTGCAAATGACGATCGTAGGGCCTGGATCCGGGAGCGGCGGCAGTGCCCTGGCGGCCGCAATGCTGGCAGGAGCTGGAGGCGGTGGAGGATCAGGTGGTAGTGCAGCGAGTAGTGTTGACACCATCGCGGTAGATGACAAAACAGCTATTTCGCCTTTGAATGCCGAAGTGAAACCAGTTGTGACAGCCAAATCCATATCAGCTGGAACGCCAGCGGTGCAGACGCAGACGCCGCCGCCGCCACCGCCGCTCTCCTCAGCTCTACCAACGCCCGCCACCACCTCTACCTCCGCCGCAAACAGCTCCAAATCCCCAAATAGCAACAAACTGAGCAATCCACCGATAAAAGCACTGAAAAGCGCACCGCCCCCGACTGAGGCGCGAGCCAACACATCCGCACATCCCACCACAAGCAGCATGTCCAGTAGTCTGTACCAGCCAACGCTGGTTACCCCGGATTACCGCTTCAATCACCCACAGCAGCAACAGATGTTTGGGCGTGGCGGCAATGCTCCGACAGCCACACTGGTGATTCCCCAAGTGCCCCAGCAGCACTTCCTCGCCAACTCCCAGCAACAGGCACACTTCTCCCATCAGCAACAGCAACAGCCGTCGACGCAACACCAGCCTCCACAGCAGCAGCAACAGCAGCCGGCCTTGAAATACACCTACGCCACTGCTTTGCCGCCGCCACCGCCGCTGCAGCTCTTCACGCAGCAGCAGGCCCTGCCGGCACCTGCAACGCAAACCAATTCGCCGCCACACGTGAAACCTCCGCCCGCCTATGGAGCCGCTATCAGTCAAATACGATCTCAGCACAACCAAAACAAACAGCAGCCGCAGCAACAACAGCTGCAGCCGCAACCCCCACACGTAACCGTGCACCACAATCACACTCTAACCCTGACACCACCGACACCAGCCGCGGCATCATCAGTAGGACCGGCAGCTGGCAAGCAGCTTGTTTCTAGCAAAGCCCATACGGAAGTTTTCCTGAATCCCCCACCACCGCCGTCGCAAGCACAGATCCAGAATCTGGGCCATCAGCAGAATCCAAACTTAAACACGCATGCTAACCCCCAGCTTCTGGGAACATCGCCCTCCGGCAGACTACATCCGCAGCATCAGCCCCTCGGCTTGCAGGCCTATGCCTCTGGCTCAGGAGCCAGCAGCAGCTGCAGCTCCTCGCTCTCGCTGTCGGTTGGTGCATCCAGCTCCACATCGGGCAGCATTCGCGGCCATCGTCAGACCAACTCGCCCTTCGGGGCATTGCTTAATGCTGCTGCGGCGGTTGCCTGCCCTTCGCCTGCCTCGTCCACGGCATCTTCGTCAGTGCTGCGCTACGCAGAGTCGCCGGTGGCCCATTACTTGGAACGCGAGAACGGGGACTTCATTGTCCAAGAGACTCCCAAGCACATTGTGGAGTGCGTGGAGAAGGAAGATGGCGAGTTTTCGGTGATTGAGCGCATATACCAGTCTCCGCCGAGCGTCCTGCATATCCACGATGAGGACGAGGACGATGAGGAGGAGGAGGACGCTGAAGACGCCCACGAGGCGCCGCTGGAGGACGATGACGGGGATGATGAGCGAGAGGAGAACAGTCGAAGTCGCACCAAGGCAACCAAGAAGTCCCGAAAGACGAAGTCGAAGCGAAACTCAAAGCGTCTGTCTGACGATGAGGAGTTCATGAGCATCAGCAGTGGCTGCGAAAGTGAGCCCGAACGGGAGCGGAAAAAGGATCATCAGACCGCGAACTCTACAACGTCTTCCCTCCCACCCTTAAGCACGGCTCCCTCAACGAGTAGGGCGGCTGCGACGGCCACATCGCCATCCAATACAGCGGAAAATCATTCCAGTTCTGCTTCAAATTCCATATCCGCCAGCACCACCACCAAATCCAAGAAGAACCGGATTACAGTGCTCAGCGACGTTCCGCTCAACATGAACGAGTACCTCGATCTAATGGGAAACATTGTGGCCTCCAGTCGCATTGGGGCGGCTCGTCCCTTTGCCGCCGTGGCTCCGATTCCGTTGGTCAAGGTGGAAAAGGAGGAGCCGCTGGATGAATATGACAATGAAGCTGAGCAGCAGCAGCAGCTGGAGCAGAAGCCCAGTCTGGAGCACGGCACCACTAGCGTAATTCGAATGGCCAGTACGTCGGTGGCGGCCACATCCGTTTCCGCCGAGGACCTAACGCAGCCGCCACCCATGAAAGTGGAAGTAGATCCCAACACCAAGCTCCTGCCGCAGCGCTTCTCTACTCCCGCCCAGCAACTGCGAGGGCCCAAGAAATTAGTCATTAAACCAAAGGCGACGGCGACGGCAACGGCGACAGCTCCAGCGACGAAAAAGACTGACACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGTGAAAGCCTAGAGGCTCCAGCGAGCAGTAGCATTCTGGAAAAGCACCTGACCACCAACAGCGGCCGCAAGCTGCTGCATCATTCGGCGGCGAATGACGATGATGCCCGCGTCCTGCTGGAGTTCGCCAACTCCAAGCAACCACCTCCGTTGGCTGCCGCTAGCACCACTTTTGTGGTGAACGCCAATACTGGATTCCCCTCGGCCGGATCCGTTTTCGCCAGCACCTCCAAATCAGCAGCTTTAAGCAAACCAGAAGATGAGTACATTCTTCCAGACAACAACAACCTAGATGTGGATGAGATTGTGATATCCTCGTCGTCTTCCTACGCTTCCTCGGCGGCGCAGGTGCAGGCCGCGCTCCAACCGCCGGACTTCAACTTCCTGTACCACCAGCAGACCACCAGCACTACCACAGTCACCACCGGTGCATACTTCAATGCCTTCTCCAAACAGCAGAATCTCCAGCAACATGGAGCGAGCGACGCCACCAATGCAGCCACTCTGGCCTCATCTTCGAGCAATTCCATGGACCACGACTCGATGAACGCCACATTCCGCGTGGCTAAGACTCAATCGCAGTCCTGGTATCAGCAGGAGCACGACCAGGATGCACATAATCAAGGTGGCGTGGGAGCCGGATCTGGTGCGGCTTCTGGTAATCAGGGTCACGATGTTGTGGCCCAGCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGATGCCAAATATCTGGATCTGGACGCCTGCAAGCGGGAGCAGCTGAGCAGCAGCAACTTGCCCTCGGCCTCCGCCTCCACTTCGACCACATCGTCATCGTTCGCTGGAGCTGGCACGGAAAGCAGCTTGGTGGGCGGCTTGAACATTCGTACAGATGAGAAGATGCCCGCCAAGGGTGAAATCTCGGAGCAGGAAAGCAACTGCGATGTAGAAAACTCGTGGAGCGAATCGGTATACGGCGATATTTCACAGCGGTACTTTAGAAATCAGTTTTCCGGAGGATACAATCCAGAATGGCGGCAGGACTACTTTCCCACTCATGATCTAAGCGGTCAGCCACGAGAGCAAAAGCATTTCGACTTCAATGCACTTGATGACGAGGCCTCATCGAGCTCTAGGAAGAGCGATCTGTTGGACATTGACCCTACGGCGGGCACCTCCATTTGTACTTCCACGTCTTCGGCTTTGCTGGCTGGTCCACCCATAGCCTCGACTTCGCGGGCTGCTGCCGAGGCGGAGGCGGCTGCCATGGCCATCGCCCAAAGGAAACAGAATCGGCGCAAGCTCTACAAATGCCCCCACTGTGCGTCCATCTTCGAGAAACTGAAGGATCGGAATGCGCACATGATCGGAGAGCATAACTATGTGCGTCAGAACCGTCGGCTCATCTGCACCCAACCGCAGGTGGCAGGTTCCGAGATGCTCCCACCCCAGCAGCAAACAATGCTCCTGCCACCGGCCGAGGGGAGTGCACTTCAAGAGGACTCCAAAGACGGCATTGTGAAAATCAAGCAGGAACAATGCCAAGATAAGACGGATGTGGAGCAAATGCACCAAAACTCCGAACTGCTGACAGACGTCAAGGACTCGGAACTGCTGGGAATCGGGGATGCTGATGGAGACGAGGATGGCGAGGGCGATTTCAAGCCGCCCAGTCAACTGGACGAAAAGATCGTACTACCACCGCTGGCCATGACTACTCCGGCTGCTAAGCTAGCAGCGCTCTATCGGATGCTCATCGCTTACAATGAGTCCAAGCTGGGCCAAGAGCGGAACAACCTCAACGAGCTGGAGCAGAAGGCCATGGAGAAGTCAATCTTCCTGTGCTACGTCTGCCGCACCGACTTTCCGTCAGTGAAGCTGTACGATGCCCATCTCACCGAGCACCCGGCCGAGTGCTTCACCTGCGGCAAGAAGTTCTACCGCTGGAAGAACTTTTCACTGCATCTCAAGCGCCATCTCGGGTGGAAGGAGTTCGGCTGCTACGTCTGCGACAAGAAATTCGTAGTACGCAGTGCTCTGGTCGAGCACATGCGGATGCATACGGGCCAAACGCCTCTCAAGTGCAAGATATGCGGCAAGAAGTTTAAACGGTACTCGAATCTAACACAGCACCGGAAAAGGCACACCAAGATGATACTGCGCAAGAAGGAGTACGTGTGCCACTGTGGGGAGGTGCTGCCCTCGAAGGCGCGCTTCCTGTGGCACAAGGAAACGCACGATCTGAAGCCAAAGTGCTGTCCCTATTGCTGCGATCGATTCGTGCATGCGAACTCGCTGCGACGCCACATTCGTCTGGCGCACTCGGAAAAATTCGATTACTCCGAGCCGATAGAGTGCCCGATGTGCAAGCAGACCTTCGCCAAAACCTCGATCAAGGCCCACATGGCGACGCATTCGACGGATCCCCAGTACGACTGTACCATCTGCAACAAGAGCTTCTCCACCAAGTGGAACCTCAAGATCCACTCGTGGGTACATGCCAACCGAACGGCCAAGCCTTTCAAGTGCGAGTACTGCCCGAAGGCGTTTGTGCGCGAGCTGGACTTCAAGAACCACATCAACGCGCACAAGCAGATCAAGCCGTACACGTGCGAGTACTGCGGCTGTAAGTTCATCCGCAAGTACAACTACATGCGGCATCGGCGCGAGCACCACGGAACCAAGAAGTTCACATGCGACCAGTGCGACAAGACCTTCCACCGGCACTACTATCTCGTCGAGCACCGGCGCATGCACACCGGCGAGCGACCCTTCACCTGCACCATTTGTGGCAAGAGCTCCACCACCAAGACCAACCACAACAAGCATCTGAAGATCCATCACTCGCGCGACCCCTTTACTGTCGAGGTCTAA
Protein Sequence: MVDNSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGPGSGSGGSALAAAMLAGAGGGGGSGGSAASSVDTIAVDDKTAISPLNAEVKPVVTAKSISAGTPAVQTQTPPPPPPLSSALPTPATTSTSAANSSKSPNSNKLSNPPIKALKSAPPPTEARANTSAHPTTSSMSSSLYQPTLVTPDYRFNHPQQQQMFGRGGNAPTATLVIPQVPQQHFLANSQQQAHFSHQQQQQPSTQHQPPQQQQQQPALKYTYATALPPPPPLQLFTQQQALPAPATQTNSPPHVKPPPAYGAAISQIRSQHNQNKQQPQQQQLQPQPPHVTVHHNHTLTLTPPTPAAASSVGPAAGKQLVSSKAHTEVFLNPPPPPSQAQIQNLGHQQNPNLNTHANPQLLGTSPSGRLHPQHQPLGLQAYASGSGASSSCSSSLSLSVGASSSTSGSIRGHRQTNSPFGALLNAAAAVACPSPASSTASSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDEDEDDEEEEDAEDAHEAPLEDDDGDDEREENSRSRTKATKKSRKTKSKRNSKRLSDDEEFMSISSGCESEPERERKKDHQTANSTTSSLPPLSTAPSTSRAAATATSPSNTAENHSSSASNSISASTTTKSKKNRITVLSDVPLNMNEYLDLMGNIVASSRIGAARPFAAVAPIPLVKVEKEEPLDEYDNEAEQQQQLEQKPSLEHGTTSVIRMASTSVAATSVSAEDLTQPPPMKVEVDPNTKLLPQRFSTPAQQLRGPKKLVIKPKATATATATAPATKKTDTXXXXXXXXXXXXXXXXXXXXXXXXXXKSESLEAPASSSILEKHLTTNSGRKLLHHSAANDDDARVLLEFANSKQPPPLAAASTTFVVNANTGFPSAGSVFASTSKSAALSKPEDEYILPDNNNLDVDEIVISSSSSYASSAAQVQAALQPPDFNFLYHQQTTSTTTVTTGAYFNAFSKQQNLQQHGASDATNAATLASSSSNSMDHDSMNATFRVAKTQSQSWYQQEHDQDAHNQGGVGAGSGAASGNQGHDVVAQPTXXXXXXXXXXXXXXXXXXDAKYLDLDACKREQLSSSNLPSASASTSTTSSSFAGAGTESSLVGGLNIRTDEKMPAKGEISEQESNCDVENSWSESVYGDISQRYFRNQFSGGYNPEWRQDYFPTHDLSGQPREQKHFDFNALDDEASSSSRKSDLLDIDPTAGTSICTSTSSALLAGPPIASTSRAAAEAEAAAMAIAQRKQNRRKLYKCPHCASIFEKLKDRNAHMIGEHNYVRQNRRLICTQPQVAGSEMLPPQQQTMLLPPAEGSALQEDSKDGIVKIKQEQCQDKTDVEQMHQNSELLTDVKDSELLGIGDADGDEDGEGDFKPPSQLDEKIVLPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLNELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMILRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSEKFDYSEPIECPMCKQTFAKTSIKAHMATHSTDPQYDCTICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGTKKFTCDQCDKTFHRHYYLVEHRRMHTGERPFTCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00580145;
90% Identity: iTF_00580145;
80% Identity: -