Dbif008772.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- -
- Assembly
- GCA_009664405.1
- Location
- CM019043.1:15942840-15949537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00058 0.039 14.2 1.5 1 23 149 171 149 171 0.97 2 15 3.4 2.2e+02 2.3 0.8 1 23 177 200 177 200 0.89 3 15 7.1e-06 0.00047 20.2 0.8 1 23 388 410 388 410 0.98 4 15 4.2 2.8e+02 2.0 3.3 1 23 416 439 416 439 0.96 5 15 0.7 46 4.5 1.9 1 23 452 475 452 475 0.91 6 15 0.0036 0.24 11.7 2.1 5 23 729 747 726 747 0.92 7 15 0.041 2.7 8.3 1.4 1 23 753 776 753 776 0.98 8 15 5.7 3.8e+02 1.6 1.3 2 19 816 834 812 836 0.56 9 15 0.0008 0.053 13.7 0.7 1 23 856 879 856 879 0.97 10 15 0.0015 0.099 12.9 0.3 1 23 1126 1149 1126 1149 0.92 11 15 0.01 0.69 10.2 3.2 1 23 1161 1183 1161 1183 0.98 12 15 0.00083 0.055 13.7 1.8 1 23 1188 1211 1188 1211 0.95 13 15 0.0017 0.12 12.7 3.8 1 23 1217 1242 1217 1242 0.95 14 15 0.031 2 8.8 5.7 1 23 1247 1269 1247 1269 0.97 15 15 0.00044 0.029 14.6 0.8 1 23 1275 1298 1275 1299 0.97
Sequence Information
- Coding Sequence
- ATGGCGTCTAACAATAGGTTGAAAACAGGCTCGGGCTTGGGCTCAGGCTCAGGATTATCCCAAATAAACTACAAGTTTACATGTCGCTGCTGTCTGAAATCCGATGCGGAGTTcctcaagctggacacgctgGCGGTGGCGCGCAATCTGGATCCAAACGAAGCGGATAAAATTCCACTGCTGCGTTGTTTGCTATTCTGCATACGCGCCGAAAACTCGCCGGAGCTGCCGCAATACATATGCGTCGAGTGTAGCAAGAGCTTGCAAATAGCCTACTACTTCCTGCAGAATGCACTGCGCGCACACGAAATACTCTGCCGCAAACTCTGTCCGGGAAAGGCCCGTCCCACGGTGGCGCAGCGCTTCAACGGTTCCATCAAACAGCCAGAGGTTGCGCTGCGGCAGTCAGGTGAGGACAACAGGAAGCCCCAAAAGGCATTCCGACACGAGTGCAAACTCTGCGGCTTTGTCGTCTACAATCGGATGGAGTTGAAGCAGCACATACGCCAGCACGTTGATGGCAGCTCCTACAGCTGCAAAGTCTGCAGCTTCGTTACGCTGAAGCAGCGTCTCCTGCAGGAGCACTATAGTGCGACCCATGGCATCTCGGCCAACCAggcggacgaacaagtgaaaccAAAATCTACATTCTACAGTGACGCCCCATCCACTTCCTCCGCGGCTGTGGCTGCCGCTCTCGATGAGGAGATTAAAGTGTGCACCCTGGAGGACATGGAGCTGCTGATTCCCACAGTTCTCACGCCCGGTGACTATCTCCAACCGTCCATCGACGAAGAGCAACTGCGCGACCTTGAACAGCAATTGGCCGCCAGCATGGGGGAGCCCGTGGCTGCTGGTGCAGACGCTCTGACCACCAATCTGACACAAATGAAGGGCAAAAAAATGAGCATTGGCAGCGAGTATGTCGTCATGCCCGATGGGACCTTGCAGATCAAGGGAGGCGGTGTGGTGATAGAATACATCGATGATAGCAGGCCAAACAGCAACGCCACTGGAAATTTGAGCCTTCAAAATCTACTTGGAGGTGGTGCCGAAAACGAGCCCATGGAGATCGATGTCAGTGAACTGATTGTGGAGGAAATGGTGCCGCAGATAAAAGCCAAGCCAAAACCAATACCCATTGGACCCGCTCCCCTCAAGTACAAATGCAAAGACTGTCCCAAAGCATTTTCCACCATGGGGCGTCTGAAATCTCACCAGATAAGCCACAGCCATTTGCCCAAGTTCTACTGCGATCAGTGCCCCTTCTTCACGCTGCGCAGCCCCGAACTCTGCCTGCACTACAAGACAAAGCATATCAAGAACGAGGAGGCCGGCTATGAATTGCAAACTTATTCCTGCGACATGTGCCTCTTCGAAGCGAGGACCTCCAACCATCTGCGGGTGCACTACACCGATAAGCATATGATTCAGCCCTCGGAAGTACAGTTGCGTCCCAGTTGGACAAGTGACTCGGCCACCGCCGGGGCCGCCATCAGTTCTGCTCGCACCAGCGGCCAGGGCTCCAATGAGCAGGGCACTCAGCTACAGCACACCGAAATTCCACTGGGCATTCAATGCGATATCAACGTGGTGGTAGATGCCACACCGTTGTTCTATGCCGCGACAGTAGCAGGGACTGGCACTGGGGCAGCGGTAGAGGGACAAAGACAAGGCCAAGGACAAGgccaggaacagcaacagggAGATCCGGGTACAATAGCCGCCGAAGCAATGGCCAACGGGGACACATATGAAATATTTCCAGAAATCTCAACGAGCGGTCTGACAGCGACTCaggcgacaacgacaacgtcgGCGAACATCTCAATGTTTGGGGATATGCAGGATTTTATAGACAACGCAGATGTGGCCGCCATATGCACCATACCCGCCGATGATATGCCCGTAGTGGATGGTGACGATATTGTGATTGACAATAACAATATCAGTTTGGACTTTGATGCTGAGAATCTGTTTGAGGACTTCGAGGATGAGGACGAGGCCGTTGgcggggaggaggaggaggacgaagACGACGAAGATGAAGACGCTGAGAATGAGGATGAAAATGACAACAATGATGCAGCTACCGATCAGAATCTGTTGCTAAcaagcgacgacgacgatgtcgATGACTTTGACGACGAGCAATCCAAGCATCTGCAGAAACCCTACTGCATATTTTGCAACAAAAAGTTTACGAGCCAATACAAGTTCGAGAATCACATGTTTGTGCATCGAGgcCTGGCCCCCTACCGCTGTGAGCTCTGCACCAATCTCTACAACATGAAGCGTCTCCTCATCAGGCACTACAAAACCGTGCACAAGCGCATGCCCACGCGGGACATGGTCCAGGCGAAGGGCGACAAGGTATTGGTGGCCCGTACCAATATCGAGACGATACAACTGGATATGGATAGGGACCCCATGCTGATGTGTGCCAAGTGTCCGTTTGAGTGTGAATTGGACACGGAGATGCGAAAGCATCTGAATGCTCATCACGGCATCAACGATGGTGTATCCGTGCATGCCAACGAGGTGTTCATTATACGCAAACTACCATTTGAGTGCCCGCGATGCATTCGCTCATTTGCGGCCAAGAGCACACTGACCCGCCATCTGCAGCGTAGCCATTTGGTGGACACGATAATTGAGATGCAATCCAACCAAACAACAACCAGCTCGGCAGCGACAACCACAAGCACCACATGCACAGCAACAACCTCAATGCCGGCGAATACGCCTGACGATATTGGGAATAAagggcagcaccagcagcagcagcagctcgagaTGGCTTCGACGGCAGCGTCGGGGACAAATACGGTTGGCTATGGCGATGGGGAATGCGAGGTAGCAGTCAAACCTGAAGGCGCCGGATTCAAAGAAGAGCCAACAACTACTTCAGGCACATCCGCATCAGCATCCGCATCATCATCGATAAGATCGACCATAAAAGCAGAATCCGCTTCACAAAGAATCCCAAATCCCCCCGATGAATCGTCAGAGCCACGAACCATGAACAGCTTAGATCATGTTCTAGCCAAGGGCGAGCCAGCATCCGCGCCACATACCGCCATACCGCCAgcatcatcttcatcatccACACCAACGccatttgattttgattttgatttaatgGGGGATGCAGGAAACTCCAGGCTTACGCCCACAACGCCCAGTACGAGCAACAAACAAATCGACCCCACCACACTCCCATACACCAGCAATCCGAGCACGAGCACCCCTTGCACCAACACCAATGCCTTTGCACCCAGCCCCCTACTCAACGGCAGCGACAAACTGTTGACTGCGGCAATGGAGCCATCGCCCATTAAGGGGCTGCGTCCGCGCATGCCACGCAACAACATCTACGTGTGCAAGCTCTGCAAAAAGAGCTTTGATGAGCTGGGCAAGCTGGTAAAGCATGAGATGGATGCGCATTCCATTGGCGAGTCGGCGCGCTTGGGCTATGAGCACAGATGTGGCACCTGTGGGACAACGTATCGCACAATGGCCCTGCTCAAGTTCCACATGAAGCGGCATTTGAACCGCAAGTTTTCGTGCAAGCTGTGCGTAAAGGACTTTGTACACAAAACGGAGCTGGACAGACATATGCTGGCCAAACATGCCACCGAGAAGTCGTTCCGATGTTCTCTGGATGGTTGTCGCAAGATGTTTGCCTTCAAGCATCATTTGGTGCGGCATCAGAACGCCTCCCATCTGAAAATGCGACATGTGTGCTCGATATGCCAGAAAGAAATGAAGACCAGCCTGCATCTGCGGCACCACATGACTGTACACAGGGGCTTGACAGCCTACAAGTGCCCCAAATGCGACCGCACCTATTTACGTCGCGGAGCCCTTCGCGTCCATGCATTGACCGTCCATCATGTGCAGCTTACGGAGGCAGAGCTGGCGGAAATCTTTCGTAACAATGTGGGCTATACCAATCCACACGACATGAAGGTCATCACACGCAATGGGCAATTGGTGCGCCGCAAGGAGCTGGAGGCCGAACGGGAAAAGGAGTTGCAGATGGGCGACGAACCATCCGTAGCAGTGGCGAATATATCAAAATAA
- Protein Sequence
- MASNNRLKTGSGLGSGSGLSQINYKFTCRCCLKSDAEFLKLDTLAVARNLDPNEADKIPLLRCLLFCIRAENSPELPQYICVECSKSLQIAYYFLQNALRAHEILCRKLCPGKARPTVAQRFNGSIKQPEVALRQSGEDNRKPQKAFRHECKLCGFVVYNRMELKQHIRQHVDGSSYSCKVCSFVTLKQRLLQEHYSATHGISANQADEQVKPKSTFYSDAPSTSSAAVAAALDEEIKVCTLEDMELLIPTVLTPGDYLQPSIDEEQLRDLEQQLAASMGEPVAAGADALTTNLTQMKGKKMSIGSEYVVMPDGTLQIKGGGVVIEYIDDSRPNSNATGNLSLQNLLGGGAENEPMEIDVSELIVEEMVPQIKAKPKPIPIGPAPLKYKCKDCPKAFSTMGRLKSHQISHSHLPKFYCDQCPFFTLRSPELCLHYKTKHIKNEEAGYELQTYSCDMCLFEARTSNHLRVHYTDKHMIQPSEVQLRPSWTSDSATAGAAISSARTSGQGSNEQGTQLQHTEIPLGIQCDINVVVDATPLFYAATVAGTGTGAAVEGQRQGQGQGQEQQQGDPGTIAAEAMANGDTYEIFPEISTSGLTATQATTTTSANISMFGDMQDFIDNADVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLFEDFEDEDEAVGGEEEEDEDDEDEDAENEDENDNNDAATDQNLLLTSDDDDVDDFDDEQSKHLQKPYCIFCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVLVARTNIETIQLDMDRDPMLMCAKCPFECELDTEMRKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCIRSFAAKSTLTRHLQRSHLVDTIIEMQSNQTTTSSAATTTSTTCTATTSMPANTPDDIGNKGQHQQQQQLEMASTAASGTNTVGYGDGECEVAVKPEGAGFKEEPTTTSGTSASASASSSIRSTIKAESASQRIPNPPDESSEPRTMNSLDHVLAKGEPASAPHTAIPPASSSSSTPTPFDFDFDLMGDAGNSRLTPTTPSTSNKQIDPTTLPYTSNPSTSTPCTNTNAFAPSPLLNGSDKLLTAAMEPSPIKGLRPRMPRNNIYVCKLCKKSFDELGKLVKHEMDAHSIGESARLGYEHRCGTCGTTYRTMALLKFHMKRHLNRKFSCKLCVKDFVHKTELDRHMLAKHATEKSFRCSLDGCRKMFAFKHHLVRHQNASHLKMRHVCSICQKEMKTSLHLRHHMTVHRGLTAYKCPKCDRTYLRRGALRVHALTVHHVQLTEAELAEIFRNNVGYTNPHDMKVITRNGQLVRRKELEAEREKELQMGDEPSVAVANISK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00474725;
- 90% Identity
- -
- 80% Identity
- -