Dbif012694.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila bifasciata
Gene Symbol
RREB1
Assembly
GCA_009664405.1
Location
CM019041.1:7518959-7525424[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.025 1.7 9.0 0.8 1 21 26 46 26 48 0.93
2 11 0.00038 0.025 14.8 0.1 1 21 58 78 58 79 0.95
3 11 1.5 97 3.5 3.7 2 19 203 220 203 222 0.97
4 11 0.028 1.9 8.9 0.0 1 23 369 391 369 391 0.97
5 11 8.5e-06 0.00057 19.9 0.7 1 23 401 423 401 423 0.99
6 11 0.00058 0.038 14.2 2.0 1 23 429 452 429 452 0.97
7 11 0.0021 0.14 12.4 2.0 1 23 744 767 744 767 0.95
8 11 6e-05 0.004 17.3 0.3 2 23 1174 1195 1173 1195 0.97
9 11 0.1 6.7 7.1 6.3 1 23 1201 1224 1201 1224 0.97
10 11 0.0083 0.55 10.5 0.6 3 23 1420 1440 1418 1440 0.95
11 11 0.00093 0.062 13.5 4.8 1 23 1446 1468 1446 1468 0.99

Sequence Information

Coding Sequence
ATGTTCTCGGAACTCTGTAGCTGCAAGCTGCAAATCGGCGAGTCCGGCATTGGGGCCGGTGATGAGCACATGAAGTACCTCTGCCCCATCTGCGAGGTGGTCTCGGCCACGCCCCACGAGTTCACGAACCACATCAGGTGCCACAACTACTCCAATGGCGACACCGAGAACTACACCTGCCGCATCTGCTCCAAGGTGCTCTCCTCAGCCTCGTCACTGGACAGACACatCCAAATGCAGGAGCGAATGATCAAGCAGCGTCGCCCCAAGACcacaatcaacaacaacatcatcgaCGAGGGCTCccaggcggaggaggaggaggatgccaGGGATGCtcggcaggagcaggagcagcagatgaaggaggagcagcccgATCCGGACACCGACGAGGATGTGGCCATGCCCCTGTCCATCACCAGCACCCCGGATGTGGCCACCCTGCTGGCCGGAGTCAATGCATCCTCGCGGGCTGCCTCGCGCTCCCGCTCCCCCTCGCCGGCCATGCCCCTTCTGAGCTGTCCCGCCTGCGGTGCCGCCGACTTTGACTCGCTGCCGGGGCTGTGCGCCCACCTGGACGCCCGCCACTCGGACATACCGGCCAAGTGCCGCGACTGCGAGGTAATCTTCGCCAGCCACCGCCAGCTGCAGGCCCACTGCTGCCGCGGCCTGGTGGGCGTGGacctgccgccgctgctgggCGCCAGCAGCTCACCGCTGCACCAGGGCgaggacgaggatgaggaggatgcCGAGGACGAGGCCCGCACCGAGAGGGAGGCGGAGCAGCGCGAGGAGTTTTTCCAGCAGCTGTACCTCAAGGGCAAGgcagccgctgccgcagcagctgccgccgGGGCATCCCACTCCTCGCCGCCGTCGCCCATCAAGCACGAGCCGGCGGACAGCAAGGATCTGGCCGACATCCAGAGCATCCTGAACatgaccagctccagctgcacCTCCAGCTTCCTGCGCAACTTCGAGCAGTCGGTGAACACGCCCTCCTCCAGCCAGTACAGCCTCGATGGCCGCgaccaggaggaggaggcccaGGACGTCTTCACCTCCGAGTTCCGCCGCATGAAGCTGCGCGGCGAGTTCCCCTGCAAGCTCTGCGCCGCGGTGTTCCCCAATCTGCGCGCCCTCAAGGGCCACAACCGGGTGCACCTCGGCTCCGTCGGCCCCTCCGGCCCGTTCCGCTGCAACATGTGCCCCTACGCCGTCTGCGACAAGGCCGCCCTCGTGCGCCACATGCGCACCCACAACGGGGACCGACCATACGAGTGCGCCGTCTGCAACTACGCCTTCACCACGAAGGCCAACTGCGAGCGGCATCTGCGCAACCGGCACGGCAAGACCAGCCGCGAGGACGTGAAGCGGGCCATCGTCTACCATCCGGCGGAGGATGCCAGCTGCGAGGACAGCAAGTCGCGCCTGGGGCTCGGCGATGATCTGGCCGATCTGAGCTTCCGCTCGATCTCCCCAcctccaccgccgccacccCCGCCCAGTGCACCGATCGCCGATGGTGGCTCCCAACTGAAGCACATGCTCCTGGGCGATCCATCACCATCGCCCTCCCATACGTCGCCCACAGTCGCCAGtgtggctgctgccgccggACCTCCATCCAAGATCCAGGTGAAGAGCCTCGACCAGCTGGTGGACAAAAAGCAGCCTGCCACTGGCGGTGCCGCTGGTGGCCCTGCCCTCGACTTTAGCATGGATGTGCTGGATCTCAGCAAGAAGCCAACAACGGGCGGATCTGccgctggctctggctctggttcgacagcggcagcgacacCCGCAACGGTGCCCGAACTGTCGGCCGttctggagcagcagcaacaacaactgctgatggcccagcagcagttctttggaggaggaggagcagccggagctggaggaggagcagcaggagcaggagtggCAGGCGATGCCGCCTCCCAGTACATGCAGCAGCTGTTCCGCAACCTCATGTTCCAGTCGCAGACGCCGGGCTTTCCGTTCTTCGGATTTATGGCGCCGCCACCACCCCAGGGCAATCCCGAGAAGCAGCCGCAGCTGAGTCCGCCCACCCGCATGGGTGCCCTGCCCCTGGCAATGCcagtgggcgtgggcgtgccCGTACCGCCCGGCGGCCCCGTCAAGATGGTCATCAAGAACGGAGTGCTGATGcccaagcagaagcagcgccGCTACCGCACGGAGCGGCCCTTCGCCTGCGAGCACTGCTCCGCCCGCTTCACGCTGCGCTCCAACATGGAGCGGCATGTGAAGCAGCAACATCCCCAGTTCTATGCCCAGCGGCAGCGCAGCGGGCACCATGTGATGCGCGGACGCGGTGCCTCAAGTGCCGCGGCGGCTGTGGCCGCAGCCGCcgctgcagcggcagccatGAGCCAGGGCGGTTCGGGGTCGGGCCATGTGCACGGCCATGCGCCCATTTCGGAGCAGGTGAAGTACGCCATTTTGGCGCAGCAGCTGAAGGCGCACAAGAACACGGatctgctgcagcaggcgCTGGCCCACGGCTCCAGCAGCGTGGCCGGTGGCAATCCCCTCCTGCACTTTGGCTACGGCCCCCCACCGCCCCAGACGCAGTCccatagccacagccactcgcactcgcacgcCCAGTCGAGTCCCCATGGGCACGCTCAGTCGTCCAGCTCGGGGTCGTCCCACCTGCTGCCGCATCTGGTGAATGGGAGCCACAATGGGAACAATGGGATCGGCGGCCAGGCGAGTGCCATCGATGATGACGAGCCCAAGCTGATCATtgacgaggatgaggatggCGAGGGCGATGTGGAGGAGTTCGatgaggacgaggaggaggaggaggatgagccCGAGGATGAGGACGCGGACGCGGACCCAGAGCCAATGGAGGAGTCGGAGCGAGCGCTGGACGCGGAgccagaggaggagcaggagctgcccAAGCCCCTGGAGCACATCTCGGCCAAGCAGGCCAATGGtggtgcagctgctgctgcagcatcgGCCAATGAGGCGGCCAAGAAGATGGCCGACACCATCCTCGAGCAGGTCATCAAGGCGGGCAAGGCCACGCCCACTGTTACGCCCATGAGCACGCGCACGCCCTCACCCTCGCCCAGTCCATCGGAGGAGGCGATGGCAAGCAGCGCAATGCCGGAGCCTAGTCCCCCAAATCCCACCATGAAGTCGATGATCGCCCAGGCCGAGTCGGTGGCCAAGTCGCTGAAGGAGGTGGCCAGCTCGCCGTTCAAGGACGAGTCACAGGACCTGGTGCCGGTGGCCAAGCTGGTGGACAACGCCACCAGCAGCCAGATGAGCTTCAACAGCTACTTCCGGCCCAGCGACGTGGCCAACCACATGGAGCAGAGCGACGAGGAGGGCCTGGTGGCCTCCGGCAGCGCCAGCGAGAGCAACAACTCCGGCACCGAGGACgtgaccagcagcagctccggcAGCGAGCCCAAGAAGAAGTCCGCCTACAGCCTGGCCCCCAACCGCGTCTCCTGCCCCTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTGCGGCGCCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCCCTGCTCTTCACCACCAAGAGCAACTGCGACCGCCACCTGCTGCGCAAGCACGGCAACGTCGAGTCGGCCATGTCCGTCTACGTGCCCACCGAGGACGTCAGCGAGCCGATTCCCGTGCCCAAGTCCGTGGAGGAGAtcgagctggaggagcagcgcCGCCGCCAGGAGGCGGAGCGGGAGCGCGAGCGCGAACGGGAGCTCGAACTGGAGCGGGAGCGCGAGAAGGAGCTGGAGCGCGAGCGGGAGCTGGAGCGGGAGCGCGAAAAGGAGCGCCTGGTGCTCATCCAGAAGCTGGCGGCTCAGATGAatgccgctgcagctgccgccgccgctgctgcctcagCCTCGACCGATCCCGGCGCTGGCGGAGATCTGCCATACAAGTGCCACCTGTGCGAGGGCTCGTTCGCCGAGCGGCTGCACTGCCTCGAGCACATCAAGCAGTCGCATGCCCACGACTTTGCCCTGCTCCTGGCCAAGGGTGCCATCGAGCCGGAGACGGCACGCGGTGCCGGCGAGTccagccaccagcagcagcagagcaccCCGGGTGCTGGCTCCGATGATGAGGCAAGTGGTGGCGGTGGCCGCGGCGCCTCCGGCAAGTATCCGGACTACAGCAACCGCAAGGTGATCTGCGCCTTCTGCCTGCGCCGCTTCTGGTCCACCGAGGACCTGCGCCGCCACATGCGCACCCACTCCGGCGAACGGCCGTTCCAGTGCGAGATCTGCCTGCGCAAGTTCACCCTCAAGCACAGCATGCTGCGCCACATGAAGAAGCACAGCGGACGCGCCCACAACGGCGACAACCCTGGCTCCGACTGCTCCGACGATGAGCAAGTTTCAACGCCTCCATCCACCCCGGGACCCACTACccccaacaccaacaacaacaacagctgccagaacaacaacaacaacaacagcagcaacaccaacgcCAATGCGAATGCCAACCCGAAGATGGGTCTGCGTCTGCCGAAGCTGCACGAGCTGCTGGACAAGTCGAGCGAGTGGCGGGCCAGCCGCCTGGTGGGCGAGCACAAGGAGAATATCGGGGAGGCAGCCACCCCGTCAGTGGCCGCCTCGGTGGCCAGCTCCGATCTGATCGGGAATCTGCTGGGCATCAGCGACCAGGGCATACTCAACAAGCTGCTCTCCTCCGCCGACGAGGCGGCCAAGCTGCTGGGAGTGGACAACAAGTAG
Protein Sequence
MFSELCSCKLQIGESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYSNGDTENYTCRICSKVLSSASSLDRHIQMQERMIKQRRPKTTINNNIIDEGSQAEEEEDARDARQEQEQQMKEEQPDPDTDEDVAMPLSITSTPDVATLLAGVNASSRAASRSRSPSPAMPLLSCPACGAADFDSLPGLCAHLDARHSDIPAKCRDCEVIFASHRQLQAHCCRGLVGVDLPPLLGASSSPLHQGEDEDEEDAEDEARTEREAEQREEFFQQLYLKGKAAAAAAAAAGASHSSPPSPIKHEPADSKDLADIQSILNMTSSSCTSSFLRNFEQSVNTPSSSQYSLDGRDQEEEAQDVFTSEFRRMKLRGEFPCKLCAAVFPNLRALKGHNRVHLGSVGPSGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREDVKRAIVYHPAEDASCEDSKSRLGLGDDLADLSFRSISPPPPPPPPPSAPIADGGSQLKHMLLGDPSPSPSHTSPTVASVAAAAGPPSKIQVKSLDQLVDKKQPATGGAAGGPALDFSMDVLDLSKKPTTGGSAAGSGSGSTAAATPATVPELSAVLEQQQQQLLMAQQQFFGGGGAAGAGGGAAGAGVAGDAASQYMQQLFRNLMFQSQTPGFPFFGFMAPPPPQGNPEKQPQLSPPTRMGALPLAMPVGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAAAAVAAAAAAAAAMSQGGSGSGHVHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVAGGNPLLHFGYGPPPPQTQSHSHSHSHSHAQSSPHGHAQSSSSGSSHLLPHLVNGSHNGNNGIGGQASAIDDDEPKLIIDEDEDGEGDVEEFDEDEEEEEDEPEDEDADADPEPMEESERALDAEPEEEQELPKPLEHISAKQANGGAAAAAASANEAAKKMADTILEQVIKAGKATPTVTPMSTRTPSPSPSPSEEAMASSAMPEPSPPNPTMKSMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSSQMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSGSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQEAERERERERELELEREREKELERERELEREREKERLVLIQKLAAQMNAAAAAAAAAASASTDPGAGGDLPYKCHLCEGSFAERLHCLEHIKQSHAHDFALLLAKGAIEPETARGAGESSHQQQQSTPGAGSDDEASGGGGRGASGKYPDYSNRKVICAFCLRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRAHNGDNPGSDCSDDEQVSTPPSTPGPTTPNTNNNNSCQNNNNNNSSNTNANANANPKMGLRLPKLHELLDKSSEWRASRLVGEHKENIGEAATPSVAASVASSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00611595;
90% Identity
-
80% Identity
-