Dbif007057.1
Basic Information
- Insect
- Drosophila bifasciata
- Gene Symbol
- -
- Assembly
- GCA_009664405.1
- Location
- CM019043.1:4386093-4389724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.038 2.5 8.5 4.4 3 23 337 358 335 358 0.94 2 17 1.7 1.1e+02 3.3 0.0 2 23 366 390 365 390 0.92 3 17 0.031 2.1 8.7 2.2 2 23 401 422 401 422 0.93 4 17 3.1 2.1e+02 2.4 0.5 3 23 463 484 462 484 0.92 5 17 0.015 0.97 9.8 0.2 3 23 492 512 490 512 0.92 6 17 0.0012 0.082 13.1 0.3 1 23 520 543 520 543 0.97 7 17 0.0011 0.072 13.3 0.2 2 23 548 569 547 569 0.97 8 17 0.00011 0.0076 16.4 0.5 1 23 617 641 617 641 0.91 9 17 0.25 16 5.9 0.5 3 21 648 666 648 667 0.90 10 17 0.014 0.94 9.8 0.6 1 23 686 711 686 711 0.96 11 17 0.69 46 4.5 1.9 2 23 729 751 728 751 0.94 12 17 0.0027 0.18 12.1 0.3 2 23 757 779 756 779 0.92 13 17 0.016 1.1 9.6 0.2 2 23 783 805 782 805 0.95 14 17 4.9e-05 0.0033 17.5 2.0 1 23 811 833 811 833 0.98 15 17 0.01 0.66 10.3 1.4 1 23 837 860 837 860 0.93 16 17 2.1e-05 0.0014 18.7 1.9 1 23 866 889 866 889 0.96 17 17 0.00011 0.0074 16.4 0.4 5 23 902 921 893 921 0.85
Sequence Information
- Coding Sequence
- ATGTcggaaaacccaaaaacaagcaaaagcgGTCCTAGCTGCCTGCATTGTAGCGCATACGGTTCGAAATTAAAGTTCCAGGAGATATTCGATGAATTTGGCCTGGAACTGGGactccagcagctgctggcgaAGCACTTCAACTTGGATGTGACGCCCAACgcaaagcagcaacagatcCTGTGCGGGGAGTGCGTAAATTATTTGATCCGGTTGTTTGACATTGACgagctacagcaacagcaggatgCTGCGATTGCTCAGAAAAAGAGCGCTGCTGCACAGGTTTCTCCCGCAGCAAAGAGTCCACTCAAAACGCCTCCACCGCCGGCCAAGCCAATTGCAAAGAAGGCAACGCCGCCAAAGCCACAAGTTAAAGTGGTGAGGCCTGTGCCGCTGGTCCGATTGAGGGAGCCCAGCCGacgcataaataaaatttcgtCCGAGACACCGGCAGCTGTAGCAGCTGTAGTGGATAAAGTCACGTCACCATCCAAAACGACGGTGCAGGCGTCGCCTTCTCCCACTACAAGAGCCAAGCGTGTAGCGAAGGAGGCAGACCAGGAGCAGATTAGTGCCCTCATTCTCAATATTCTAAACGAGGATGAGCCGGACGTGGAAGATGAGGCAGATAATGTTGCCCCCGTCTCTCCCCAATCGCCTGCAGCAAAGACAAGTCCAACCAGCATTGATTTGCCAGAGGAGGAAGCGGTGCCTGAGGCAGAGAATGAAGAAGATCTTGATGGAGTGCATATTATATACGAGCATGAGGATATTTtacttgaagaggaggtgaaTACCAAGCCAGACCTCCGTCAATCCAGACTAAAAGTGCAGAAAAGGGACAGCCAGAGCGAGGCGGAAAACGAGGAGAGCGAGAGCAGCAATATTGTCGTCTTTAACTTTGTCGACATCAAAGAAAATGATGAAATTGACGACCTATACGAATACTTGGGCACGGTGGTGAGGACCAGCTTCGAGAAGCTAACCTTTGACTGGAGCACTGCCTGCAAACATTGCACATTTAAGTGCACTACCTACGAGAACCTGCTGGACCACATGACGCAGGTGCACACGTCCCAGGGGGATGTCTCTCAGTGCCCAATCGAGGGCTGCAGCAGGGAGCTAAAAGGATCCAAACTTCTAGCCATGCATTTGGTGGTTCTACATGCACCTGTGGCCGATATCTCCATTTATGGCAGCTGCCCGGAATGCAAGATGACATTTTCCAATATTTTGCAGTACAATAAACATTCGTGTGCGCATATCATCAAGAAGAAACGAGGGGTTCGTTTGTATTGCGAAATGTGCGCTATGGAGTTTCCCTCCTGGAAGCGCTTTAATTTTCACAATCAAttccatttggagaagcaccGACCGCGTGCGTGCTTTGTCTGTGGCTACGAGAACACCAACATTGACGAACTGTTTCAGCATTTGCACTATTCCCACGAGCCAGAGGGCACCCTCTTCTGTGATCTCTGCGATCGCACGTTCCGGGATCCCGCCGTCTTTGCAGATCACAACTCGTCGCATGCGAATGTGAGCGACACCATCTACTCCTGCAACGAGTGCTTGGCCAGCTTCGAGACTCGCGGCCGACTGAATGGCCACATGAGATTAATGCATGGCAATGTCATCAGCTGTGAGCTCTGCTCCCGCGAGTTTGCCTCTGAGGTCACCTACAACGTCCACATGAAATCCCATTTGATTATCGAACGCGAAGTTCATGTCTGCGGCAATTGTGGCCTACTGAGTGAGAATGAAGAGAAAATGAACGTCCACTTGGGGATCGAGGGCTCTGCCTGCTATGGGGCAGAGAGTTGCGCGGAACTGCTGCGCGATGCCTATGTCTGCGAATACTGCACCACGTACTTTAAGGAGAAGTCCGACTTACAGGCCCATCGCGATACCGGTGTACACAACAATGGGGTGTTTTGGTGTCAGCCTTGCGATAAGGAATTTCCCGACATGAAATTGTATCGCCACCATTTGCGCAACTATCAACAACTGCGAATAGATGTGGCACATCGGAAGCTGGACATTTGCACCTTCTTCATGTGCGATCAGAAGGACTGCTCGGCGGCATATGCGAACTGGAACTCATTGTATACGCACAAGCGGCGCACTCACGATGCGCCCGacaagcagcaggagaaaTCGGCCAAGCCGTTGCAGGAATGGCAATGCCAATTCTGTCTGAAGCTATGCCGCTCGAAGATGTCCTTATCCGTCCATGTCGCTCGGAGCCATAATAATGACAATGTGGTCTGTTCGCTGTGCAACGCTTCGTACAAGAGCAAGGAGGCCCTGGAAAATCACCATGCCTACTGGCACGAGCCCATCGAGTGTCCGCAGTGCTTCAAGATAGTCAAGAATCGGCGCAACTACGACACCCACGTGAATGTGGTGCACTCAAACAAAAAGCGCTACACTTGCAGTGTTTGCGAGAAGGGCTTCTACCACAAGAGCGAGATGGAGGCTCACAAGAGGCTCCATTCCCAATCGTACAGTTGCGAGCAGTGCAGCTTTACTACCAggaacaagaagtcactgtcCGTTCATACCCTGGGCCAGCACTTCAAGCGATTTGCCTTCGACTGCAAGATGTGCGGCAAACACTTTGGCCGACGCCAGGGACTGACCAATCACATCCAGCGTGTGCACGCCGCCAAGCATGTGTGCCGTGACTACATTGATGATGGCTGCGGACGTTCGTTTAGCAACAGTTTACAGCTGAACATACATTTGCGCAAGGTGCACAACGCCACTTTAGAAGCCGACGATGGGCAAGACGAGGAGGCGTACGCAAAACCACCAGCAGCGAAGAAACTTCGCCTTGGAATTGCGGAAGATGCCAAAGAGGAGTTCGTAGACGACGACAGGACGAAAGACGCTGATTATAACGttgatgaggaggaggaggaggaggaggcggaggaaGAAGATGAGGATGAATTTGAGCTGGAGTTTACCGAGGTCTCGgacgaggcagaggcagaccaTAAACCGAAACTGAAATCGAAACGAAAACCAGTGTCAGCCAGAAGGCATGGACGAAAACACCGTTCGGATGATTAG
- Protein Sequence
- MSENPKTSKSGPSCLHCSAYGSKLKFQEIFDEFGLELGLQQLLAKHFNLDVTPNAKQQQILCGECVNYLIRLFDIDELQQQQDAAIAQKKSAAAQVSPAAKSPLKTPPPPAKPIAKKATPPKPQVKVVRPVPLVRLREPSRRINKISSETPAAVAAVVDKVTSPSKTTVQASPSPTTRAKRVAKEADQEQISALILNILNEDEPDVEDEADNVAPVSPQSPAAKTSPTSIDLPEEEAVPEAENEEDLDGVHIIYEHEDILLEEEVNTKPDLRQSRLKVQKRDSQSEAENEESESSNIVVFNFVDIKENDEIDDLYEYLGTVVRTSFEKLTFDWSTACKHCTFKCTTYENLLDHMTQVHTSQGDVSQCPIEGCSRELKGSKLLAMHLVVLHAPVADISIYGSCPECKMTFSNILQYNKHSCAHIIKKKRGVRLYCEMCAMEFPSWKRFNFHNQFHLEKHRPRACFVCGYENTNIDELFQHLHYSHEPEGTLFCDLCDRTFRDPAVFADHNSSHANVSDTIYSCNECLASFETRGRLNGHMRLMHGNVISCELCSREFASEVTYNVHMKSHLIIEREVHVCGNCGLLSENEEKMNVHLGIEGSACYGAESCAELLRDAYVCEYCTTYFKEKSDLQAHRDTGVHNNGVFWCQPCDKEFPDMKLYRHHLRNYQQLRIDVAHRKLDICTFFMCDQKDCSAAYANWNSLYTHKRRTHDAPDKQQEKSAKPLQEWQCQFCLKLCRSKMSLSVHVARSHNNDNVVCSLCNASYKSKEALENHHAYWHEPIECPQCFKIVKNRRNYDTHVNVVHSNKKRYTCSVCEKGFYHKSEMEAHKRLHSQSYSCEQCSFTTRNKKSLSVHTLGQHFKRFAFDCKMCGKHFGRRQGLTNHIQRVHAAKHVCRDYIDDGCGRSFSNSLQLNIHLRKVHNATLEADDGQDEEAYAKPPAAKKLRLGIAEDAKEEFVDDDRTKDADYNVDEEEEEEEAEEEDEDEFELEFTEVSDEAEADHKPKLKSKRKPVSARRHGRKHRSDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00564117; iTF_00474664; iTF_00611508; iTF_00603519;
- 90% Identity
- -
- 80% Identity
- -