Basic Information

Insect: Drosophila biarmipes
Gene Symbol: -
Assembly: GCA_018148935.1
Location: JAECYG010000260.1:9421394-9428555[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00021 0.013 15.7 3.4 1 23 271 293 271 293 0.98

2 10 0.001 0.061 13.6 10.5 1 23 300 322 300 322 0.96

3 10 0.0001 0.0062 16.7 6.5 1 23 328 350 328 350 0.98

4 10 0.00047 0.028 14.6 1.6 1 23 356 378 356 378 0.95

5 10 2.2e-05 0.0013 18.8 0.5 1 23 384 406 384 406 0.97

6 10 2.2e-05 0.0013 18.8 0.1 1 23 412 434 412 434 0.98

7 10 0.00013 0.0076 16.4 2.0 1 23 439 462 439 462 0.97

8 10 0.01 0.61 10.4 0.6 1 23 468 491 468 491 0.96

9 10 0.00017 0.01 16.0 0.1 1 23 554 576 554 576 0.98

10 10 0.0045 0.27 11.5 4.9 5 23 676 694 668 694 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00021	0.013	15.7	3.4	1	23	271	293	271	293	0.98
2	10	0.001	0.061	13.6	10.5	1	23	300	322	300	322	0.96
3	10	0.0001	0.0062	16.7	6.5	1	23	328	350	328	350	0.98
4	10	0.00047	0.028	14.6	1.6	1	23	356	378	356	378	0.95
5	10	2.2e-05	0.0013	18.8	0.5	1	23	384	406	384	406	0.97
6	10	2.2e-05	0.0013	18.8	0.1	1	23	412	434	412	434	0.98
7	10	0.00013	0.0076	16.4	2.0	1	23	439	462	439	462	0.97
8	10	0.01	0.61	10.4	0.6	1	23	468	491	468	491	0.96
9	10	0.00017	0.01	16.0	0.1	1	23	554	576	554	576	0.98
10	10	0.0045	0.27	11.5	4.9	5	23	676	694	668	694	0.92

Sequence Information

Coding Sequence: ATGTGCGCCGCCCAGAATCCGCCGCCCTTCGGCTATACCTGGGGCTTTGCTGACAACGGCAGCCGCGCCACCGAATCGGTCCTGGAGATATCGCCGAACATCAACTACACGGTCAGCGGGGAGTCGATGCCCTATCTGCTATCGACGGATGGATCATTAGCTGTTCAAAAGGACGTTAAAGGCCTGACAGCTGGCGGCAAAAATAATGTCGTACGTCGCATGTTCGTGGTAAACGATCCGTCATTTCCGCCTGGAACCCAGAGAGTTATCACCGCTGGAGGATCGACGGTGGTCAAGAAGCAGGACCAAAATCAGCAGGTTCTGAGCCTCGACAAGAACTATCTGCTGGTGGATCCGGCCACGGCCGCAGCAGCAGCTGCCGCTGCTGGTGGGGATCAGGGGCTCGCCCACCACCACACGCTGACCAACGGCAGCATAGTTGATGCCAAGACCGGACAGACGGTGCTAACCGCCGGCTCTGCGGCGGCCAAGTCGCACTTCAGCTCGATCGGAGCGCTGCATCTCACGCAAGAGGAGTGCAATGAGATCCTGATCAAGCGCGCCATCGCTGCCGGCCACCATCAGACGCACACGATCACCGCTGCCGACGGATCCCATCACCATGCGTCCGGCGGGACACCAATTCAAGTACAGAAAGTAATACAAGGACTGGAAGATAACGAGGACTCGCAGGGCGAAGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACCATCAAAAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATCTGACAACCCACGCACGCGTGCACACAGGTGGTGAACGCCCCCACATCTGCACCCACTGCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTTCTTCACTCCACGGAGCGACCCTATCAGTGCCAGGAGTGCAAGAAGAGCTTCACCCTCAAGCACCATCTGCTGACCCATTCGCGTGTCCATAGCCGCGAGCGACCGTTCGTCTGTCAGGAGTGCGGACGTGCCTTTCCGCTGAAGCGCCACCTGGTCACGCACAGCAAGTTCCACGCAGGCGAGCGACCCTATGTCTGCGAGGAATGCGGGGAGAGCTTTGCTCAGGAAAACCACCTGATTATGCACTCGCGCTTCCATGGCTCGTTGAATCCATTTGTTTGTGCAGAGTGCGGAGCTTCGTTTCCACGCAAGTTCCAACTGGTTAACCACGGGCGCATTCACGGCAAGATCCCCCACTCGTGCACTGTGTGCGGCAAAGAATTTCTACAGAAGCGAACACTGGTTTCCCACATGAGGCGCGTACACACTGGCGAGCAGGCGCATCCCTGCGTCAGCTGCGGCGAGGGATTCCTTACCAAGGCCGAGCTACACCAGCATGTGAGGACGGCGCACAATGGCGTCAATCCGAACACAAGCAGTGCCACCATCATAGCCAATCAGCAGCAGCTGCAACAGGCCCATCACCATCAGGCCGGTCAACAGACGCATCCGCAGACCATAACTGTGGTGAGCAATCCGGGTAACTCCACGCTGCTAACTGTCTCCACGACAGATGCCAATGGCGTGGCGCGTCCACAGTTTGTGTGCCGCGAGTGTGGCAGCGCTTTTAACAGTCGAGAGGCCTTGGCACTTCACTTGCGCCTTCACACTGGCGATAAGAGCCTGATGACAGATCTGTGTGCCTTGACGGCCGCGCTGCCGGGACACTTCTTGAGCACGGCCAGCCTGAATCCAGGCACCGTGGTCACGGCCAACCCGAATCTGGTGGGCCAGAGCCCAGTGCCTGTGCAGATCATATCGTCCACCGGTCAGGTTATGTCGCAGACCACACTGGTGCAGGCCGCCAACTCGACCCATCCGCAGGCTGTGGTCACCGCGGTGCCCACGATGCCCCACAATAGGCGGCACCCGAACGGCGGATGCACGGTACGCACCCACGTGTGCGAGTGCGGCAAGGCCTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTCGAGACGAAGCCAGCCATATCCCAGCAACAGGAGGCCACTGCCCAGCAGCAATTGGCGGCTGCCGGCGAACAGCAGCAAGTGCAGGTGCAGATAATGCCCGATGGCCAGATCCACGGAAAGGTGATCAAGTACGAGATCTGCCGCAGTGTCTTGCCAGAGGATCAGCAGCAGGAGCAGGGCGACATGAGTGCGGACTAA
Protein Sequence: MCAAQNPPPFGYTWGFADNGSRATESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGLTAGGKNNVVRRMFVVNDPSFPPGTQRVITAGGSTVVKKQDQNQQVLSLDKNYLLVDPATAAAAAAAAGGDQGLAHHHTLTNGSIVDAKTGQTVLTAGSAAAKSHFSSIGALHLTQEECNEILIKRAIAAGHHQTHTITAADGSHHHASGGTPIQVQKVIQGLEDNEDSQGEAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNGVNPNTSSATIIANQQQLQQAHHHQAGQQTHPQTITVVSNPGNSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTMPHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEATAQQQLAAAGEQQQVQVQIMPDGQIHGKVIKYEICRSVLPEDQQQEQGDMSAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00481685;
90% Identity: iTF_00565530; iTF_00515742;
80% Identity: -