Basic Information

Insect: Drosophila biarmipes
Gene Symbol: -
Assembly: GCA_018148935.1
Location: JAECYG010000260.1:13281644-13283585[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.8 1.7e+02 2.8 0.1 1 16 32 47 32 49 0.85

2 11 0.86 51 4.4 2.0 1 20 118 137 118 138 0.92

3 11 0.00073 0.044 14.0 0.6 2 23 180 201 179 201 0.97

4 11 0.00043 0.025 14.8 0.5 1 23 227 248 227 248 0.97

5 11 0.00044 0.026 14.7 2.0 2 23 256 277 255 277 0.96

6 11 9.4e-05 0.0056 16.8 0.6 1 23 303 325 303 325 0.98

7 11 1.2e-07 7.2e-06 25.9 0.5 1 23 331 353 331 353 0.98

8 11 0.0011 0.063 13.5 5.5 1 23 359 381 359 381 0.98

9 11 1.8e-05 0.0011 19.1 0.4 1 23 387 409 387 409 0.97

10 11 8.9e-06 0.00053 20.1 0.4 1 23 413 435 413 435 0.99

11 11 0.0002 0.012 15.8 0.2 1 23 465 488 465 488 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.8	1.7e+02	2.8	0.1	1	16	32	47	32	49	0.85
2	11	0.86	51	4.4	2.0	1	20	118	137	118	138	0.92
3	11	0.00073	0.044	14.0	0.6	2	23	180	201	179	201	0.97
4	11	0.00043	0.025	14.8	0.5	1	23	227	248	227	248	0.97
5	11	0.00044	0.026	14.7	2.0	2	23	256	277	255	277	0.96
6	11	9.4e-05	0.0056	16.8	0.6	1	23	303	325	303	325	0.98
7	11	1.2e-07	7.2e-06	25.9	0.5	1	23	331	353	331	353	0.98
8	11	0.0011	0.063	13.5	5.5	1	23	359	381	359	381	0.98
9	11	1.8e-05	0.0011	19.1	0.4	1	23	387	409	387	409	0.97
10	11	8.9e-06	0.00053	20.1	0.4	1	23	413	435	413	435	0.99
11	11	0.0002	0.012	15.8	0.2	1	23	465	488	465	488	0.97

Sequence Information

Coding Sequence: ATGTCAGTGTTCAACCAGGCTGAGGAGACTAACCCGGACGCCCACGTGGAGCAAGTAGTCTTCTCGGGAAGTGGATCTGGAGGGCAGGAGTTATTCTATTGCGAGAGCTGCGGCAACGTCTATGAGGATAGCGAAGCGTATGCCCGCGATCATACCGGTCAACCCGGCTTCTGCGGGGGCGCAGAGGAAGGACTGGAGTTCGTAGACGGGATGACAGGAGATTTCATTTTAGAGGAGGTCGGCGACGAGGACATCGTCGAGCCGGACGTGCCGCTCTGGGAGCTGGTGGAGGAAGTTCCGGGCAACAGCACGGCTGAGCACGGTGATGCCGAGCCCAGCGAGTCGGATCGCTACTTTTGCTACGACTGCCACAGCATTTTCGAGAACCGCAGCAGTGCCGAGGAACACGTCTGTCCGCAGGCGGAATCCGCGGCAGGTTCCAGCCAGCAGGTGAAGGCAGAGTCCAATGCAGCGGTCCGGCGAAAATTGAGCAGTGCTAGTGGCAGGACGGGTCCAAAAGATGCATCCTCCGCAATTAGCTGCGGGATTTGCAACACCGTTTTCAGCTCGGAGAAGTTCCTAAAGTTCCACATGCGCATCCACGACAGTCGCGCGTCCAAGAGCATTCAGGACGCCCTTCCCGTAGGCGCCCATCAGCAGTACAGCGAGCTGGATCAGTTCTACTGCGAAATCTGTAACAAGAGCTTCGATGAGAACCTCTTGGCGGTGCACAAACAGATGCACCAACAGACCACGTACGAGATTATGTGCAGCATCTGCAACCGAAAGTTCGACGACCAAGTTACCTTCCATATGCACCAAAAGATCCACGAGAAACCTCGGGAGACCAAGACCTCTGGAAGACCTAACCAGCGTCCTAGTGTTGTCGACAAGGAAAAGCCCGGGTTTCCCTGCCAGTACTGCGAGCGCGTGTTCACCCGTCCCTTCGAAAAGGTCAAGCACGAACGCGTTCACACGGGTGAGAAGCCCTACGCCTGCGAGGTCTGCGGGAAGACATTTCGTGTGTCCTACTCGCTAACCCTTCACCTGCGCACCCACACCAACATTCGGCCGTATGTGTGCACGGTGTGCAACAAGCGATTCAAATCACACCAAGTGTACTCCCATCACCTGCGCATCCACAGTTCGGAGCGGCAGTTTGCCTGCGATGCGTGCCCCAAGTCATTTCGCACCTCCGTGCAGCTGTACGCCCACAAAAACACCCACACCAAGCCTTACCAGTGCGCTGTGTGCAACCGGCCCTTCTCCTCGATGTACGCCGTCAAGAATCACATGCAGACCCACAAGGATGACAAGGGTAAAGAAAGTGCCGGTGCTAGTACGGCGACCCTCAAGAGCGGAAAGCCTGCGAAAACCCAGTCTGCTGGCAAGTTTTATTGTAGCACTTGCGGAGCTGAGTATGCGCGACTCTTCGCCCTACGCCTGCACATGAAGTCGGCCCACGGCGTGATGGAGGATGCGGCCTTGCGGCAGGAGGATCCCTCCGGGACAACTGAAGAAGTGCAAGCCGTCGAGACCGATGATTCCGAGACTGCGGTGCTAATAGCTGCCGCCGAAGCAGACGCCGCCTATATTAATGCTGTGGTAAACGACGTCGACGTTGTGGGGTCTGTTCCCACCTACGAGGAGTGCGTTGAGTTTGACGTGGATAATTTTCACAGCGAGGAGATTATCACGGATTGGCTTAAGTAG
Protein Sequence: MSVFNQAEETNPDAHVEQVVFSGSGSGGQELFYCESCGNVYEDSEAYARDHTGQPGFCGGAEEGLEFVDGMTGDFILEEVGDEDIVEPDVPLWELVEEVPGNSTAEHGDAEPSESDRYFCYDCHSIFENRSSAEEHVCPQAESAAGSSQQVKAESNAAVRRKLSSASGRTGPKDASSAISCGICNTVFSSEKFLKFHMRIHDSRASKSIQDALPVGAHQQYSELDQFYCEICNKSFDENLLAVHKQMHQQTTYEIMCSICNRKFDDQVTFHMHQKIHEKPRETKTSGRPNQRPSVVDKEKPGFPCQYCERVFTRPFEKVKHERVHTGEKPYACEVCGKTFRVSYSLTLHLRTHTNIRPYVCTVCNKRFKSHQVYSHHLRIHSSERQFACDACPKSFRTSVQLYAHKNTHTKPYQCAVCNRPFSSMYAVKNHMQTHKDDKGKESAGASTATLKSGKPAKTQSAGKFYCSTCGAEYARLFALRLHMKSAHGVMEDAALRQEDPSGTTEEVQAVETDDSETAVLIAAAEADAAYINAVVNDVDVVGSVPTYEECVEFDVDNFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00548230;
90% Identity: -
80% Identity: -