Dbak015308.1
Basic Information
- Insect
- Drosophila bakoue
- Gene Symbol
- Aef1
- Assembly
- GCA_008044335.1
- Location
- VNJL01001250.1:2972-4021[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.011 1.5e+02 3.2 0.1 22 46 199 223 194 226 0.89 2 4 1.8e-05 0.25 12.1 0.0 21 52 226 257 224 258 0.89 3 4 0.019 2.7e+02 2.4 0.1 21 48 254 281 252 285 0.85 4 4 5.5e-05 0.77 10.6 0.1 21 47 282 308 279 315 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAGCCTGCCCCATGCCCATGCCGCTGCCACGGCGATGAGCAGCAACTGCGACATTGTCATTGTGACCACCCAGCCCCAAACTACCCTTgctaacaataacaacaatgatACGGTCACCCAGGCCACGCATCCCGGCCACATggcagctgcggcggcggcaacagttcagcagcagcaacagcagcagcatcaccagcagcagcagcagcagcagcaacaacagcagcagcagcaacagcagcctaGTGGACCGCCCTCggcaccgccgccaccgccgacgGAACTGCCCTTGCCCTTCCAGATGCACCTGAGCGGGATCTCGGCGGAGGCGCATAGCGCCGCTCAAGCAGCGGCCATGGCAGCTGCCCAGGCAGCGGCGGCCCAGGCGGCAGcggccgagcagcagcagccagcgcCCCCGCCACAGTCTCAGCCAACGCACCTGGCACATCTGACCTCGCACAGTCCAACGATGTCCAGCGATCACTATCTGGGTACCAACGGGCATGGCGAGCATCCCGGCGAGGGTGGTGGGGCTGGCAGCAATGGCAACGCCGGCGGCGGGGGACCTCGCGAGCTGGAGAAACCCTTCCACTGTACCGTGTGCGATCGTCGCTTCCGGCAGCTGAGCACACTGACCAACCACGTGAAGATCCACACTGGCGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACGAACCATCTGAAGATCCATACGGGCGAGAAGCCCTACAATTGCAACTACTGTCCTAAGCATTTCCGTCAGCTGAGCACTCTGGCCAACCACGTGAAGATCCACACGGGTGAGAAGCCCTTTGAGTGCGTCATCTGCAAGAAGCAGTTCCGCCAGTCCAGCACGCTCAACAACCACATAAAGATCCATGTGATGGACAAGGTCTACGTTCCTGTCAAGATCaaaacggaggaggaggaagggtGA
- Protein Sequence
- MMHIKSLPHAHAAATAMSSNCDIVIVTTQPQTTLANNNNNDTVTQATHPGHMAAAAAATVQQQQQQQHHQQQQQQQQQQQQQQQQPSGPPSAPPPPPTELPLPFQMHLSGISAEAHSAAQAAAMAAAQAAAAQAAAAEQQQPAPPPQSQPTHLAHLTSHSPTMSSDHYLGTNGHGEHPGEGGGAGSNGNAGGGGPRELEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00613017;
- 90% Identity
- iTF_00491728;
- 80% Identity
- iTF_00485371;