Basic Information

Gene Symbol
ct
Assembly
GCA_005876895.1
Location
VCKU01000095.1:3035090-3068678[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 7e-27 5.8e-23 80.6 0.0 3 72 1100 1170 1098 1175 0.95
2 3 6.9e-32 5.7e-28 96.6 0.0 3 77 1588 1663 1586 1665 0.96
3 3 4.2e-31 3.5e-27 94.1 0.0 3 76 1877 1951 1875 1954 0.96

Sequence Information

Coding Sequence
ATGGCGAAGGATATTCCGCCTCCCTTCCCCGCAGATGCCTTGGTGCCTCCTCGTGGCGCATTGAAGCGCGCTACCCTTGCCGAAAAGGAAGTGAACACACTCAAGGAGCAACTGTCCACCAGCAACACGGATCCAGCCAGCGGCAGCATCCACAGCGACAGCGAGAACCACAGCCACAACCACACAGGAGGAGCGTCCGCcgcaggagcagcagaagggGAAGCAGGTGTCCAGGAGATCGAGGACTCGGATCTGGAACTGGCCAGCGGAGGCGGTGGATCTGGATCTGGCCATCAACTGAATAGCTCCATTGTTGCAGCGGCCATCACGCTGCAGCAGAACGGCGGCAATCTGTTGGCCAACACCAATACGCCGTCGCCCTCGCCGCCGTTGCTCAGCgccgagcagcagcaacagttgcAGAGCAGCCTGCAGCAGAACGGTGGTGGTGTCGGCGGCGCCTGCCTCAATCCGAAGCTCTTCTTCAACCACGCCCAGCAAATGATGATGGAGGCGGCAGCAgctgccgcagcagcagcagcggcagcggcggcggcggcggctgtccagcagcatcagcaccagcaCTCGCCCCTGCATTCCCCAGCAGCGGAggcagcagccgccgcgtcGGCTGTGGGGCCCACAGATCATCAAACAGTGGCCGAGGCCACTGCAACCACCACCCACACAgccaccaacagcagcagcagcagcaacaccaccaccaccaacagcaacaacaacaacagcggcagcaggagCCATGGCAGCCTCCACCACAACGAGGACGAAGAGcaggacgacgacgatgaggaGGACGACGAGGAGGAGAACGCCTCCATGCAGTCGAATGCAGCGCATttggacgacgacgacgatgacatGGAGCTGGAGCCCCATCAGTCCCTGGAGGCCATCGAGTCTGCGGCAAGAACTGAAccacaccaacagcagcagcagcagcagcagcggcagaggcatCTGGCCGGCGATGCAGGTGATCTGGAGGAGGCGTCTGCTGGGGCGGCTGTTGCGGCTGCCACCGATGCAGATCGAGATGATGAGGAAGCTAGTTTAAATGTTAGCAATAATCACAATACCGATAGCAATAATAGTTGTAGTCGaaagaacagcaacaacagcaacagcgtcGGCACAGGCACAGGTGTGGCACTGCGTGATAGCAATGATGATATGGATGATCCACATGTGGCAACATCGGTTCATAGTGCCGAGGATGATGACTGTACCAacaacaataccaataccagcaacaacaacaacaacaacaatggagGAAGCAGCAACGAGAAGCGCAAGAAGCGTAACAACAAcacaaacagcaacagcaacaatcaGCCCGCTGTACAAATTGCTGCCAAAGACAAAGAGATTAAAGCACTTCTGGAGGAGCTGCAGCGCCTGCGCGCCCTGGAACAGACGCATCTGGTGCAGATCCAGCGTCTGGAGGAGCATCTGGAGGTGAAGCGACAGCACATCATGCGCCTGGAGGCACGCCTCGACAAGCAGCAGATCAACGAGGCCCTGGCCGAGGCCACCGCCTTGGCTGCCGCCGTCAATGCGGCtgccaccaacaacaacaacaacagccagaGCAGCGACAACAACAAGCTGAATGCCGCCTCTCCACTggaggcagcaacagcagcagcagccatcgATCTGGACGCCACCCAGGCCTCAGTCCGGGCTGAGgacgatgaggaggaggaggaggaggacgaccACCAGGCCATGCTCGTGGACAACGACGAGGGCGAGGAGGCTGCCTCCGCCAGCTCGCGGCTGGCTccccaccagcaccagcatGCCGATGAAGAGGACGAAGACGAGGAGGACGAGGATGCCGAAGATCAGGATCATGCTGACCGCATGTCAAACCAAACCACAGCCAATGCAGACAGCAGCGAGCTGAAAATCAAAAAGGAACAGCACAGTCCTTTGGATCTGAATGTTCTGAGTCCCCAGTCGGCCATTGCGGCCGCGGCCGCTGCCGCAGCTGCCGCCGCCTGTGCCAACGATCCCAACAAATTCCAGGCCCTGCTCATGGAGCGGACCAAGGCCCTGGCCGCCGAGGCCCTCAATAATGGTGCCGCCAGTGCCAATGCCAGTgccagcggcagcggcagcggcattGACTCTGCCAATGCGATCAGCGAAGCGATGCCGCCGCCCCCAGACGAGGCCTCCTCCGCTTCCTCCTccacaggagcagcagcagcaacagcggctGCAGCACCTGccacaggagcagcaggagccgCCGACACAtcccaaaaccaaaacccaaCCGAAGCTGAAACGCATGaaaacgaaacggaaacggaaattgCAACTGCCACCGAGGCAAGCGATGAGCTGGCGGCCACAATGCGTCCAAAGCAAGAGCTCGAAGACGATATTGAGAACGATAACGATAACCAAAACGATAACGATAACGAAAACGAGGATGAAGATGAGGATGAGGCGATCTTGCAGCCGCCCGCCACACTTGAAGAGCAGCTGGTCAACAGCTACTGGCGACGCGGCTTCGAGAGACCCAATCCACCGCCGCCAAAGCCTGACCAAACAGTTGCCaagccacagccccagcctcagccAGGGAGCAAAACGCCAACAATTTATCAAAATGTCAATGCGGGGCAGCAGCCACAGTTgctgccgccaccgccgccgccaccgctaaccgtgcaacaacaacagcaacaacaacaacaacaacactaccaacaacagcagcacgGACCCTCGTCCACAGCGTTGCTCAGTCAATTGCTGCTGCATCCGTCAGCGGCCCACCACCTGCACCACGCCGACTCCAACTCCTCCAGCGCCACCAGCACCCCCAACAGCACCGCCCAACTGGCGGCCAGTCTGGCCAGCACCCTCAATGGCAGCAAGTCCCTGCTGCaggcagccgccgccgccaatGCTGCCGCCGTCGCAGCCGGCGCCGTGGCCgaagacaacaacaacggcTTGACGCCCAATGCCAatgcagcggcggcggcagcggccaTGGCCGCCCACGCCCAGCATGCGGCGGCCTTGGGACCGGGCTTCCTGCCCAGCCTGCCGGCCTTCCAGTTTGCCGCCGCGGCGGCCGCCAACCAGGATGCGCGCGGACACTATCGGTTCGCGGACGCGGAGATGCAGCTGCCGCCGGGCGCCTCGATGGCCGGCCGCCTGGGTGAGTCGCTGATACCCAAGGGCGATCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTACGCCAACCAGGCCCTGGACACGCTACACATCTCGCGCCGCGTCCGGGAGCTGCTCTCCGTGCACAACATCGGACAGCGACTGTTCGCCAAATACATCCTGGGCCTGTCGCAGGGCACCGTCTCCGAGCTCCTGAGCAAACCAAAGCCCTGGGACAAGCTGACGGAGAAGGGACGCGACAGCTACCGCAAGATGCATGCCTGGGCCTGTGACGATAACGCCGTCATGCTGCTCAAGTCGCTGATACCCAAGAAAGATTCGGGCCTGCCTCAGTATGCGGGACGCGGCtctggcggcggcggtggcgatGACTCTATGTCGGAGGACCGCATTGCCCACATCCTGAGCGAGGCCTCCTCGCTGATGAAGAGCACCGCcgcccagcagcagcgggaCCAGCAGGACCAGCAGCGTCGCCACGCCGGCGAGGACACGCACAGCAACGAGGACAGCAAGTCGCCGCCACAGAGCTGCACATCGCCGTTCTTCAAGGTGGAACAGCAGCTGAAGCAGCATCAGCACCGGGACCAGCAGCACATGGCCTCCGAGCAGCGGGACGCTGTGGTGGCCGccgcccagcagcagcaccaacagcaccagcagcagcgggagcagCGCGAACGGGAAcgcgagcagcagcagcgactcCGCCACGAAGATCTCGCCCAGGACAAGATGGCCCGCCTCTACCAGGAGCTGATAGCCCGCACACCACGCGAGGCAGCCTTCCCCAGCTTCCTGTTGTCGCCCTTCTTTGGAGGAGCCGCCGGCATTCCCGGGGCGGCCAATGCATTCCCAGTTCCCGACGAGAACATGCGCCACGCCTTCGAGCGGGAGATCGCcaaactgcagcagcagcaccagcaacagcagcagcaggcggcccaggcccaggctcAGGCCCAGGCGGTCTCCGGCTTCCCCAACTTCTCCAGTCTGATGGCCCTGCAGCAGCAGGTGCTCAACGGCGCCCAGGACCTCTCGCTGGCCGCCGTCAAGGATATCAAGCTGAACGGCCAGCGCGGCTCCCTggagcacagcagcagcagctccaagGACGGTGACCGCGAGGATCCACGCGACTATCCGCAGTCACTGCACGGCCGCAAGTCCGACACCCCGGCCCCGCCCGCACCGCCAGCCCCGCCCTCGGGCAGCGCCGGCAGCGTGCCCGGATCGGCCAACAGCCTGTCCAGCGCCAGAGACGGCGTTGGAGCCGGCACAGGATCCGTGGGACCCGGCAGCCATGCCAGCAACTCGGCCGCCCCCAGTCCGCTGAGCAACTCGATCCTGCCGCCGGCACTGAGCAACCAGGGCGAGGAGTTCGCGGCCACCGCCAGCCCCCTGCAGCGTATGGCGTCCATCACCAACTCGCTGATCACCCAGCCGCCGGTGACGCCGCACCACAGCACGCCGCAGCGTCCCACCAAGGCGGTGCTGCCGCCCATCACCCAGCAGCAGTTCGACATGTTCAACAACCTGAACACGGAGGACATTGTGCGGCGCGTGAAGGAGGCCCTCTCCCAGTACAGCATCTCGCAGCGTCTGTTCGGCGAGTCGGTGCTGGGCCTGTCGCAGGGCTCCGTCTCCGACCTGCTGGCCCGCCCCAAGCCCTGGCACATGCTCACCCAGAAGGGCCGCGAGCCCTTCATCCGCATGAAGATGTTCCTCGAGGACGAGAATGCCGTGCACAAGCTGGTGGCCAGCCAGTACAAGATCGCCCCCGAGAAGCTCATGCGCACCGGCAGCTATTCCGGCAGCCCCCAGATGCCCCAGGGCCTGGCCAGCAAGATGCAGGCCGCCGCCCTGCCCATGCAGAAGATGATGAACGAGCTGAAGCTGCAGGAGCCAGCCCAGGCGCAGCACATCATGCAGCAGATGCAGGCCGTGGCCATGTCCGCGgccatgcagcagcagcagcaggcggccgccgccgccgccgccgttgCCGCCCAGCAGCAGAGCCAGCACCAGCATCCCCACCAGCACccccatccacatccacatccgcaccagcagcatcagcaccagcaGGCCGCCGCGGCCGCCCAGGCAGCCGCCGCCCTGCACCACCAGAACATGCTGCTCACGTCGCCCGGCCTGCCGCCCCAGCACGCCATCAGCCTGCCCGCCTCGGGCGGTGCTGCCTCCTCCGTCGGCGGTGGCTCCAATCCCGGGGGACAGGGCAATGCCGTTGGACCCGCTGGGCCACCCTCAGGGCCGGCGAGCGAGAAGAAGCCCATGCTGATGCCGGTGCACGGAGGCGCTCATGCGCCCAATGCCATGCGCAGTCTGCACCAGCACATGTCGCCCACCGTCTACGAGATGGCCGCCCTCACCCAGGACCTGGACACGCACGACATCACCACCAAGATCAAGGAGGCTCTGCTGGCGAACAACATCGGCCAGAAGATCTTCGGCGAGGCGGTGCTGGGCCTGTCGCAGGGCTCCGTGTCGGAGCTGCTCAGCAAACCGAAGCCCTGGCATATGCTCTCGATCAAGGGCCGAGAGCCGTTCATCCGGATGCAGCTGTGGCTGAGTGACGCCAACAATGTGGAGCGACTGCAGCTGCTCAAGAACGAGCGGCGGGAGGCGAGCAAGCGGCGCCGCAGCACCGGCCCCAACCAGCAGGACAACAGCAGCGACACCTCCAGCAACGACACCAACGACTTCTACACCAGCAGCCCCGGACCCGGCTCCGTGGGCTCCGTGGGCGGTGCGCCGCCCAGCAAGAAGCAGCGCGTGCTCTTCTCCGAGGAGCAGAAGGAGGCGCTGCGGCTGGCGTTCGCCCTCGACCCGTACCCCAATGTGGGCACCATCGAGTTCCTGGCCAACGAGCTCAGCCTGGCCACACGGACCATCACCAACTGGTTCCACAACCACCGCATGCGGCTCAAGCAGCAGGTGCCCCACGGCCAGCCCGGCCAGGACAACCCCATACCGAGTCGGGAGAACACCAATGCCACCCCCTTCGATCCCGTCCAGTTCCGCATCCTCCTCCAGCAGCGGCTCGTCGAGCTGCACAAGGAGCGCATGGGTCTGGGCGGAGCGCCCATCCCCTACCCACCGTACTTCGCGGCGGCCGCTCTCCTCGGACGCAGTCTGGCGGGGATTCCGGGTGCCGCGGCTGCTGCCggcgctgctgccgctgcagcggcCGTTGGTGCCGCCGGCGTCGGCGTTGGAGAcgagctgcagctgcaggcCCTCAACCAGGCGTTCAAGGAGCAGATGAGCGGCCTGGACCTCTCCATGCCGACGTTGAAGCGCGAGCGCAGCGACGACTACCAGGACGACCTGGAGATGGATGCCAGCGGCCACAACATAAGCGACAACGAGTCGCTGGAAGGCCAGGAGGCGGAGGACAAGGTCTCTGAGTACGAGAAGCAGAAGTCCGCCCTCGCCTCGGCGGCGGCCGCCTACATGAGCAACGCCGTTCGCAGCTCCCGCCGTAAGCCAGCGGCCCCCCAGTGGGTGAACCCAGCCGGCACCACCACCCCCAATGCGGGactggcagcggcagccgtggcagcggcagcagcagcagccgccgtaGCGGCACAGTCTGGCGCTGGCAGCGAGAGCGAGCGCATCATCAACGGCGTCTGTGTTATGCAGCAAGGCTCCTCCGACTACGGTCGGGACGATGCTGACGGCAAGTCGGTGGAGGCTGGCGGCGGCGACTCGGAGCACGAGCACGCCCAGCTGGAGATCGACCAGCGGTTCATGGAGCCCGAGGTGCGCATCAAGCAGGAGGAGGACGATGACGAGGAGGACGaccagcagctgcagcagcagctggatgGTGGCCTCGACTGcgaggcgagcgaggcggaGAAGAAGCTGAAGGTGATCAACGAGGAGAAGCTGCGTCTGGTGCGCGTGCGACGCCTGAGCAGCAACGGCGCACCCGGCCAGGCGGACTCGGAGGAGTCGTCAGCGACCTGTGTCGCCGCCACAGGAGCTGCTGGCAGCGGGGCTGTGGCAGCTGCCCAGGCGGTAGCCAGTGCTGCGCCAGCAGCCGCGTGGAACTACTAG
Protein Sequence
MAKDIPPPFPADALVPPRGALKRATLAEKEVNTLKEQLSTSNTDPASGSIHSDSENHSHNHTGGASAAGAAEGEAGVQEIEDSDLELASGGGGSGSGHQLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSSLQQNGGGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAAAAAVQQHQHQHSPLHSPAAEAAAAASAVGPTDHQTVAEATATTTHTATNSSSSSNTTTTNSNNNNSGSRSHGSLHHNEDEEQDDDDEEDDEEENASMQSNAAHLDDDDDDMELEPHQSLEAIESAARTEPHQQQQQQQQRQRHLAGDAGDLEEASAGAAVAAATDADRDDEEASLNVSNNHNTDSNNSCSRKNSNNSNSVGTGTGVALRDSNDDMDDPHVATSVHSAEDDDCTNNNTNTSNNNNNNNGGSSNEKRKKRNNNTNSNSNNQPAVQIAAKDKEIKALLEELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNSQSSDNNKLNAASPLEAATAAAAIDLDATQASVRAEDDEEEEEEDDHQAMLVDNDEGEEAASASSRLAPHQHQHADEEDEDEEDEDAEDQDHADRMSNQTTANADSSELKIKKEQHSPLDLNVLSPQSAIAAAAAAAAAAACANDPNKFQALLMERTKALAAEALNNGAASANASASGSGSGIDSANAISEAMPPPPDEASSASSSTGAAAATAAAAPATGAAGAADTSQNQNPTEAETHENETETEIATATEASDELAATMRPKQELEDDIENDNDNQNDNDNENEDEDEDEAILQPPATLEEQLVNSYWRRGFERPNPPPPKPDQTVAKPQPQPQPGSKTPTIYQNVNAGQQPQLLPPPPPPPLTVQQQQQQQQQQHYQQQQHGPSSTALLSQLLLHPSAAHHLHHADSNSSSATSTPNSTAQLAASLASTLNGSKSLLQAAAAANAAAVAAGAVAEDNNNGLTPNANAAAAAAAMAAHAQHAAALGPGFLPSLPAFQFAAAAAANQDARGHYRFADAEMQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGSGGGGGDDSMSEDRIAHILSEASSLMKSTAAQQQRDQQDQQRRHAGEDTHSNEDSKSPPQSCTSPFFKVEQQLKQHQHRDQQHMASEQRDAVVAAAQQQHQQHQQQREQREREREQQQRLRHEDLAQDKMARLYQELIARTPREAAFPSFLLSPFFGGAAGIPGAANAFPVPDENMRHAFEREIAKLQQQHQQQQQQAAQAQAQAQAVSGFPNFSSLMALQQQVLNGAQDLSLAAVKDIKLNGQRGSLEHSSSSSKDGDREDPRDYPQSLHGRKSDTPAPPAPPAPPSGSAGSVPGSANSLSSARDGVGAGTGSVGPGSHASNSAAPSPLSNSILPPALSNQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLASKMQAAALPMQKMMNELKLQEPAQAQHIMQQMQAVAMSAAMQQQQQAAAAAAAVAAQQQSQHQHPHQHPHPHPHPHQQHQHQQAAAAAQAAAALHHQNMLLTSPGLPPQHAISLPASGGAASSVGGGSNPGGQGNAVGPAGPPSGPASEKKPMLMPVHGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLGGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAVGAAGVGVGDELQLQALNQAFKEQMSGLDLSMPTLKRERSDDYQDDLEMDASGHNISDNESLEGQEAEDKVSEYEKQKSALASAAAAYMSNAVRSSRRKPAAPQWVNPAGTTTPNAGLAAAAVAAAAAAAAVAAQSGAGSESERIINGVCVMQQGSSDYGRDDADGKSVEAGGGDSEHEHAQLEIDQRFMEPEVRIKQEEDDDEEDDQQLQQQLDGGLDCEASEAEKKLKVINEEKLRLVRVRRLSSNGAPGQADSEESSATCVAATGAAGSGAVAAAQAVASAAPAAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00471398;
90% Identity
iTF_00535844;
80% Identity
iTF_00484345;