Datr007777.1
Basic Information
- Insect
- Drosophila atripex
- Gene Symbol
- Znf574
- Assembly
- GCA_035045925.1
- Location
- JAWNOP010000052.1:5787277-5789414[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.069 5.3 7.7 0.2 2 23 312 334 311 334 0.95 2 10 2 1.6e+02 3.1 0.2 6 23 344 361 344 361 0.97 3 10 1.9e-05 0.0015 18.9 0.5 1 23 367 389 367 389 0.98 4 10 0.00022 0.017 15.6 0.7 1 20 404 423 404 427 0.87 5 10 9.4e-05 0.0072 16.7 0.9 1 23 435 458 435 458 0.97 6 10 3.3e-05 0.0026 18.2 1.6 3 23 466 487 464 487 0.92 7 10 0.0011 0.083 13.4 0.4 2 23 499 521 498 521 0.97 8 10 0.00055 0.042 14.3 7.1 1 23 528 551 528 551 0.93 9 10 6.9e-07 5.3e-05 23.5 0.8 1 23 557 579 557 579 0.98 10 10 6.8e-05 0.0052 17.2 1.3 1 23 585 608 585 608 0.97
Sequence Information
- Coding Sequence
- ATGACGTCTTGCGTCCTATGCCAGGACAGCACCGACGCCGTCTTCACCCTATTTTCCGAAGAGGGCGTCCGGCTTAACATAAGGGATATCATTGCCAAgcacttttcatttttcgaATTGCCCAGCACGGGCAGCGATGCGGAGGCTATTTGTCGGGAGTGCTGGACATGCGTCACCAGCTTCGACGAGCTGTACCAGAAGGTATTTAAGCTGCATCAGTTGAGTGGGGAAGACGCGAAAAGCGTTCCCATCGAGTTTTGTGGGGAAACGGAATCTATCAATCCACTGTTTACCCTGGAGGTGGATGCCCTAGCCGAGGGATTTTTCGCTCCCAATGAGGTAAAAGTGGAGGTCAACGAGTTGGAGCCCCTCCCAAAACTGGAACTCCTCGAAGACCCCGTTGATACGGAATCCAAGTCAAGCAAACGGTCTAGATCTCAATCGGAGGGCCCCTCGCAACCAAAGCGTCGAATCAAAAATGAACAGCCCGTGGACAGTGAATCGGATGTGCCATTGTCAGTGTATCTAGAGACAGCTCCGCTCAGAAGAAGCACAAGACGTGGACGCCCACCAAAGGCGAAACCTGAACCACCCCCTTCCTCGCCCAAAAAAGAGTGCCTTTCCGAAGAAGATGCTGAGAACGATAGGGACGACACAGAGTTTGAGCCGCCGGAAGCTGTTTTGGGGACGGATGATAGTGCCACTTCCTCCAGCGACAGCAGTGGCGAAGACTCGGATGACAGCCTGCCAGACTTTGAGCCAGAGGAACGGTATGCTGAAATTCCCAAACGGGTTGTTGTCAAACCTAAGAAGTATAGAAAACGGGAGAAGCCCCTGGTTCCGCCTGTACGAATGAGTCGGGCAGAGATTGAGAgacgaaagcagcagcaggacgAGTATGATGACATTATAATGGAGTTCTTCAAGAAGCTACCCTGCTCCATTTGCAATCTGCTTGTCCAGAATTTTGCCGACATGCGACGGCATCAGCGCATGTCCCACGACATCGATTCGGGATATATCGAGTGCTGCGGGAGAAAGTTCCACATTCGCAAGGGGCTGGCGGAACATGTGCTGGTACACAAGAACCCGGATCACTTTATGTGCTCGCAGTGCGGGCGGGTGTTCCAAGACTCGCGTACTTTGGAAATACACGAGCAGACGCACATAAGTCCGGAGGTCAAGACGGAACCCAAGGACAAGCCAGTTTACCAGTGCGATAAGTGCCCAAAGAGTTTCACCACCAAGGCGGCCATCGAATACCACAACGTGTCCAAACATGTACCCAAGTCCGAGTTCAAGTATTCCTGTCCAGagtgcaaaaaaaaAATACCCACTGAGCGAAAATTGAAAGAGCACATGCGGTACATGCACGACCCCGAATCGGCTATCATCTGCGATAAGTGCGGCAAGACACTGCGCTCTCAAACGAATCTCAAGAAACACCACGAACTGGAACATTCCGACGAACCTCGTCGTAAGCCTGATCCCGTCCAGTGCGAGATTTGTGGCACCTGGCTGCGCCACCTCTCAGGACTGAAACAGCATATGAACACGGTGCACGAGCCGCCGGGCGGCGAGCACCGCTGTCACATATGCAACAAGACCTCCACTAATTCCAGAGCTCTTAAGAGACACATATACCACAACCACCTCTGCGAGCGCAAGTTCAAGTGCGGTATGTGTGACAAGGCCTTCAAGCGGCCTCAGGATTTAAGGGAACACACATCCACGCACACCGGTGAGGTGCTCTACACCTGTCCCAACTGCCCCATGACCTTCTTCTCCAACGCTAACATGTACAAACATCGGCAACGGCTCCACCGTGCCGAATGGGAGGCGGATCGAAAGAAACCACTGCCGCCGAATATAATGAAAATTTCACAGGGCGCTACAACGGCGATGAAGAAGCGCCAGACGAGCAGCGGCATGTTCCCACAGTTGGAACAGAAGCAATAG
- Protein Sequence
- MTSCVLCQDSTDAVFTLFSEEGVRLNIRDIIAKHFSFFELPSTGSDAEAICRECWTCVTSFDELYQKVFKLHQLSGEDAKSVPIEFCGETESINPLFTLEVDALAEGFFAPNEVKVEVNELEPLPKLELLEDPVDTESKSSKRSRSQSEGPSQPKRRIKNEQPVDSESDVPLSVYLETAPLRRSTRRGRPPKAKPEPPPSSPKKECLSEEDAENDRDDTEFEPPEAVLGTDDSATSSSDSSGEDSDDSLPDFEPEERYAEIPKRVVVKPKKYRKREKPLVPPVRMSRAEIERRKQQQDEYDDIIMEFFKKLPCSICNLLVQNFADMRRHQRMSHDIDSGYIECCGRKFHIRKGLAEHVLVHKNPDHFMCSQCGRVFQDSRTLEIHEQTHISPEVKTEPKDKPVYQCDKCPKSFTTKAAIEYHNVSKHVPKSEFKYSCPECKKKIPTERKLKEHMRYMHDPESAIICDKCGKTLRSQTNLKKHHELEHSDEPRRKPDPVQCEICGTWLRHLSGLKQHMNTVHEPPGGEHRCHICNKTSTNSRALKRHIYHNHLCERKFKCGMCDKAFKRPQDLREHTSTHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMKISQGATTAMKKRQTSSGMFPQLEQKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00546127;
- 90% Identity
- iTF_00546127;
- 80% Identity
- -