Basic Information

Gene Symbol
Trerf1
Assembly
GCA_008042795.1
Location
VNJZ01009084.1:507158-517373[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.4e-09 5.5e-06 26.6 0.1 2 45 1618 1661 1617 1662 0.93

Sequence Information

Coding Sequence
ATGTGCAGCGCCTCCGTGGGCACCGAGGGATCCGTGACTCTGCAACTGAGGGATGCGAACGCCTTGGAGGCGACCACATCAAGCTCTTCGAAGACAGCAaccagcggaggaggagcagcggcggcggcggcaggagcaggagcatcgTCCACGAATGGCGCTGCAACTGCGTCAGCGGCGACGCTAGAGAATGCGCTGACCATCGGCTATCCGGATCCGGAAATGTTGGCAGATGTCTTGGGCACCATTCAGACAGCCTCTCTTAAAAACCACAACACCAACTCAATCACAGCAAGCAACGGACACGGGCACGGACACGGTCACGGCAGGCATGTGCCCAGCTCCGGAGGAGTAAGCACAGCGGCGGCCGCCACTAGCAACAGCTCGAACGGGATAGGGATAGGGATTGGCGGGATCATCAGCGTTGAAGCGCCGCGCAAGAATCGCCCCAAATTATCCTCACCGACGCGACACGGTCCGCAGCAGTGTCAGACTTGTTGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAGCGGAAATACATCTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAGTGTAAGGCGGATGGCTGCGGCAAGTCCTACTGCGACGCCCGCTCCCTGCGGCGTCACTCGGAGAACCACCATGCCGGCGGCGCGACCacgcccaccaccaccagccagCAATCACTCTCGCCCACCGCCAGCTCGAGTGgggcgagcagcagcagcgtgggcgtggccaccaGCTCGCTAAGTCTCTCGCCGGCCACGGCCAGCGGGGATGCCAGCTCCCCGGACGGGGCCACCTGCATCCGCACCTACATCTCCACGGGCAGCTCGGTGGTGGACGCGGCCACCGGGATAGCACTGTCGGACGAGCAGATCAAGGCCATGAACTTGCCGATAAAGACGGGCGTGACCCTGCTGTCGCCCACCACCTCGACCTCGTCGAATGCCTCCTCCACGGCCTCGTCATCGTCCTCATCCGCCTCTGCCTCGGCCTCCATCTCGTCGCTCTCCTCGGCCTCATCTGGTATTGGCCTAACGGCGGTGTCTTCGCCCTCCAGCGTGGGCACCGTGATAGCCACCAGCTCGCCAGCGCCGACCATCACGCTCAGCGATGGGATGAGCCTCGAGGGCGAGGGCCTGACCCGGGAGCAGCTGGACCTCATCAGCAAGATCATGCAGCAGACGAAGCAGACGAGCGCCCAGGTCACGGTCTCCTCGCCCACCAGCGTCAGCTCCTACAAGATCAACACCAACCAGGCGCCGTCGCAGTCGAGGCCAAGAACCTGGAACATGCAATTGCTCAACAGTGCACAGAATGTGACGGTCACCGTCGAGGACAACACCGAACTGGTGGCTCCCTCTTCCAGCTCCCCCGTGGAggtcaaggaggaggagctgagTCCGCAGCTAGTGGCCGCCATCAATCCCCACCTGCTCAACATTGTGAAGCTCGACAAGCCCGTCGAGTGCAATCTGTGTCACCGCAAGTTCAAAAACATACCCGCCCTCAACGGGCATATGCGCCTCCATGGCGGCTACTACAAGAAGGATCCGGAGACCAAGCGCAGCGAGAAGAAGGACTCGAGTGGTCCGCCCCTGCAGACGGCCAGCATAGGAGTGCGTGCCCTCATCGAGGAGAAGATCATCAGCAAGCGCAAGGACATGACAAAGGGCTCCTTCGTGGTTCCCGCGCCCCCACACAGCagcggcaccaccaccaccctgCGGCGGTCCATCAGCGACCTGGAGAGCTTCCTCAATCCAAAGAGCAGCTCGAGTGGCCACACCCAGACCCTGAACACGGGAACAGGCACCACCACAGCGGTGCTGCCGGCGGCCACCACCATCAAGAGCAGCAACGGGCTGAGCATTCAGCAGATCGGCCTGCCGCAGAGCATCGAGATCTTCAGCGGCGGCCAGAAGCAGGCAAAGACCCTCAACCTGGGCAGTGGCACCAATACCATCACTATAACCACCAACAATGTGCCCACCACCACGACGATGAGTGCTCTGACCGCCCTGAAGGCCGGCGGCACCATTAGCGGCATTTCCACGGCCACCAACACGGATCCCAAGGACTCGACGCTGATAGAGCTCCTGAAGCGGGGCACACGCATCGCGGTCACCTCGAAGAAGGCGCAGGCCCAGTGCCAGACGACATCCGGTGTCCTGATGACCTCCAGTTCCACGGCCACGCAATCGATGGGCACCCTCACCGAGCTGACCACCATTGGCGGGAGCAGTGTGCAGGCGGTGGGCCGCCAGATCATCACGAATAACAATCGCACCGTGATCATACCCTCCGACGTCCAGGTGGTGTCCACCAAGAGCAAGCTGACCAGCCTGAGCACTCTGAGCAGTCTGGTGAAGAGCACTGTTGCCACAACCACCAGCAGTTCCACCAATACCAGCTGCTCCTCGGGAAATCTCTCGCTGGCAGACGGGACTCCCCTCTCGCTGACCATAGCGCCCAGCCAGGATGTATCCGGTGGAGGAGGTGTTCCGAGTGGGACTGGCAGCGTGATCAccagcggaggcggcggcgtcTACACGGTGACCTACACCAGCGACGGCACCGATCTCTTCGACGACGCCGAGGTGTACAACGTGTCCGACACGGAGATGCTGCTGCAGACGGTAGACTCGATGGAGCTGCTgcacgacgacgaggaggagccgcAGATCAAGAGCGAACATTCCGAGGACTTTGCCATGCTGAGCGAGGCCGGCGACAGTGCGCACACCCAGCTGGTGAAGCTGGAGCCGGAGAGTGGGCAGGCCAGCGGCAACTCCTCctcaggaggaggaggaactggAGCCAACACCACGCCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTGATCATGCAGAACAGTTCGCAGATCCAGGCGATAGCCAGCATGCGGCCAAGTGGAGCTGGTtccggagcaggagctggcaATGGCAGTGGCGTCCTGGCCTCGCCGCTCCACTCGCCGCTGGCCTATCCCACGCCGCCGTCGAGCCACGAGAACATGGCCCAGAGCTCGCCGTTCATCGAGGATGCGGCCGCCCAGTTCGTGGACGCCAGCAACACCTTCTTCGGCGACAAGACGGACTTCTCGCACATCTACTTCAAGACGGACGAGGGCCAGGCCACCATCGAGCAGATGAACGAGCACGACAACGAGAAGATCCTCAAGCTCAAGTCGGTGCTGGAGGAGAGCAGCTTCGATCCCTCCATCAAGGTGGAGGACCTGCTCAACGGCACCGACGACGACACCGAGTGCGATCTGCGAGAGTTCGCCGAGACGAATCTCTCGTTCCTGGACGAGGATCAGGAGTTCCTCAACGATTCCCGCAATGCCACCTCCCCGCTCTCGGAGTCCTTCTTTACCAGCGGCATAGGCTCGGCGGAGGATGTGAAGCAGGTCCTGCGGGAGGTCCTCCCGGATGAGAACATGCAGCTCCAGCTGACCAGCGAGCAACAGGGCGAGAACATCATCGATCTGTACTACCTGCCCGGCCTGGGACTGCAGTCCCAGATGATGCCCAACTCGGAGGACCCCCTGCTGTCCTCGTCGCCCAGGGAGtttggccagcagcggcagcagatgAGCAGCATCCAGCCcttggagcagcagctccagcagaaTGGCAACCTctaccagcaacagcagcagcaggagcagcagcagcagacgcagcagctccaggagcagcaacagccccAGCAGGAGCcatcccagcagcagcagcagcagcagcaataccAGCAGATCCTGCTGCCCCAGCAGACGGCTAATCAAGGGGAATCCCTGCCAGCGGTGGTCCAGCAGCAGGCCGACTTCATGCTGCCCCTGGTGGGGGGACATGGCTTCGCCCAGGTCTCCTCCGGCCAGGCCCAGTACGTGGACAATGGCCAGGGCAACATGCAGGGAATGCAGCCCCTCAACAGCctgctgcagccgctgctCTACCAGGGAGGAGTCACCTCCAATGGcattgccgccgccgggcAAGAGGGCCTGTTGTCCACTGATTGCCAAATGAATGCCAATCAGAGCCAGACATCGACTCTGGATGCCGGACTGCTGTTCGCCTGCGgcaacaccaccaccacaaccAGCAATGCAGCCACGACGACAATGGGTGGTAATAAATCCCTGCTAGCCTCGGGGCCCCTTTCCGGCTCTGTGTCCAACCTGCAGCCGCTGTCGAACCAAACCAATTCCATTCTGAAGCGCCGCCTGCGCTCGAGTGCGCCCCAGGAGACGCACAAGTTCTCCAAGTTCCACACGCTCTCGCCGCACCGCTCCAAGCTGCGCAAGCCCTCCCGCACCCACTACACGCCCGCTCCGATCCTGAATCCGGATCGCAAGGGCACCGGCCTCTACTGCAGCGTCCGCAAGCAGCTGGGCCTGAGCCAGGGCCTCTTCGATGCCTTCGACGACGACTTTGGGGATCCGGTGGGTCTGGTCGACTTCTCGGACGAGTCCAAGGTGAATCTGGGTTCCACCTACCAGGCGCAGATACCCAGCTGCCGGTCGCCCGAGGAGGCTGTGCGAGACTCGCCCTGCGCCGAGCTGATGTGGAATCCGGAGGTGCAGGAGGACGAGAAGATCCTGATGCGGTACATTGATCTCAGCAAGTCGTCGGCCGTGCCCATGGGCAGTCATTCCGAGGAGGTGGCGCTCCACACGCTGCTCAAGGCCAGGGGCAACTCGGCGGCAGCGGTGCTCACCCTGCTCCAAACCCAGTCCGGCGCCTTCCAGATGAAGTGGACGGCCTACGAGCTGGAGCAGTTCCTGCGGGGCCTGGAGAAGCATGGCAAGGACTTTGGCAAGATTGCCAGCGAGCTCCTCACCAAGTCCTCCGGCGAGTGCGTGCAGATGTACTACTTCTGGAAGAAGCTCTGCGTGGACTACAAGGTCTCGCACCTGAAGATGGAGCCCGTGGTGGTGATCACTCCTGCCGTGGAGAAGCCCTATGTCTGCGAGATAGCCGACTGCTCAGCGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTCCGCATTCACGCTTATGGTCGCAGCAACAGTAGCAACACcagcaatggcaacaacaacaccagcagcagcggcagcagcagtaataataacagcaacaataaccaGCATGGCACGGCCACTAGTGTGAATAGTAGCGGCGGCAACCCCAgtagcagcaacaccaacagcagcagcagcatcctcaACGGCAACATTAACGGCAGCAACTTTacctgcaacagcagcagcaataatcCCGCCAGCAATGCAGCAACtcctgcaggagcaggagcaggagcagcagcaacacatgCCGCATGCAATCCGAATCCTGGCACAACGACTGGAGCGGTCACCGCCATCTCGGCCACGTCCAAGCCGGAACAGGGAATTAACGCCATACCAGGTGCCGCCAAGGAGGGCGAGTTTCCCTGCAAGGTGTGCGGCAAGGTCTTCAATAAGGTGAAGAGTCGCAGTGCGCATATGAAAACCCATCGTGTCCAGGAGCCGGATCAGAAGCACCAGCAGCTCAATcaccaggcagcagcagcagcaggaggagcagctgcatcaGCTCTGGCCACCGTCGCCGCATCAAGCATCACCACTTCGTCGTAG
Protein Sequence
MCSASVGTEGSVTLQLRDANALEATTSSSSKTATSGGGAAAAAAGAGASSTNGAATASAATLENALTIGYPDPEMLADVLGTIQTASLKNHNTNSITASNGHGHGHGHGRHVPSSGGVSTAAAATSNSSNGIGIGIGGIISVEAPRKNRPKLSSPTRHGPQQCQTCCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHAGGATTPTTTSQQSLSPTASSSGASSSSVGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSSSSSASASASISSLSSASSGIGLTAVSSPSSVGTVIATSSPAPTITLSDGMSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNQAPSQSRPRTWNMQLLNSAQNVTVTVEDNTELVAPSSSSPVEVKEEELSPQLVAAINPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYYKKDPETKRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDMTKGSFVVPAPPHSSGTTTTLRRSISDLESFLNPKSSSSGHTQTLNTGTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQAKTLNLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKAQAQCQTTSGVLMTSSSTATQSMGTLTELTTIGGSSVQAVGRQIITNNNRTVIIPSDVQVVSTKSKLTSLSTLSSLVKSTVATTTSSSTNTSCSSGNLSLADGTPLSLTIAPSQDVSGGGGVPSGTGSVITSGGGGVYTVTYTSDGTDLFDDAEVYNVSDTEMLLQTVDSMELLHDDEEEPQIKSEHSEDFAMLSEAGDSAHTQLVKLEPESGQASGNSSSGGGGTGANTTPLPTFQQFHSKELIMQNSSQIQAIASMRPSGAGSGAGAGNGSGVLASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDEGQATIEQMNEHDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLTSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQQMSSIQPLEQQLQQNGNLYQQQQQQEQQQQTQQLQEQQQPQQEPSQQQQQQQQYQQILLPQQTANQGESLPAVVQQQADFMLPLVGGHGFAQVSSGQAQYVDNGQGNMQGMQPLNSLLQPLLYQGGVTSNGIAAAGQEGLLSTDCQMNANQSQTSTLDAGLLFACGNTTTTTSNAATTTMGGNKSLLASGPLSGSVSNLQPLSNQTNSILKRRLRSSAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCSVRKQLGLSQGLFDAFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPSCRSPEEAVRDSPCAELMWNPEVQEDEKILMRYIDLSKSSAVPMGSHSEEVALHTLLKARGNSAAAVLTLLQTQSGAFQMKWTAYELEQFLRGLEKHGKDFGKIASELLTKSSGECVQMYYFWKKLCVDYKVSHLKMEPVVVITPAVEKPYVCEIADCSASFSSKAALHGHVRIHAYGRSNSSNTSNGNNNTSSSGSSSNNNSNNNQHGTATSVNSSGGNPSSSNTNSSSSILNGNINGSNFTCNSSSNNPASNAATPAGAGAGAAATHAACNPNPGTTTGAVTAISATSKPEQGINAIPGAAKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQEPDQKHQQLNHQAAAAAGGAAASALATVAASSITTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00590178;
90% Identity
iTF_00480408;
80% Identity
iTF_00480408;