Dari000224.1
Basic Information
- Insect
- Drosophila arizonae
- Gene Symbol
- -
- Assembly
- GCA_001654025.1
- Location
- NW:15897271-15899378[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.2e-05 0.29 10.7 0.6 14 48 215 250 213 256 0.87 2 4 0.00036 1.4 8.5 0.1 22 44 280 302 277 310 0.86 3 4 0.024 96 2.7 0.0 23 44 309 330 303 334 0.82 4 4 0.0017 6.7 6.4 0.0 21 43 335 357 324 366 0.87
Sequence Information
- Coding Sequence
- atgtccaCTTCTGAGGACAAGTCATCCCTTGAGGTAGCTGAGCTACAGCCCTGCCGCGTTTGCAATGTGCCATCCACACAGTCCTATTCGCTCTACAAGCCGCACATCATCGCCGGCGAACTGACAACGCTCGGTGCGCTGCTCAGCTACTGCGCTAACTTGCAGGTGCTCGAGGAGGAGCAATTCCtgcccacacacatatgcaagcGGTGCGTGGAATCGCTCACCCAGGTGTACGATTTCAAGCGTACTGCTCTGCGCACGGACCACGTGCTTAGGAAGCGTAATGCTCGACTATCTAGAGCGACCATATCCCGATCTCCATCGCCGGCGAATCTTGTCGATGTTGAGGCTGAGCCTGTGTCTGAGCCTGAAGCTGAGGCGAATGCTGCCATGGAAGCGGCGAGTGCGGATGAATATGTCTATGTGCTTGAAGAACCACAATCACCCGTGAACAGCGTCGCATCCCATCAACCGGATGACGATCACGAGCCTGCGCCCGACGAAATGCTGGAGAGCGAAGTGCACTTTGAGGTTAGCGATCCCACTGTTGAGTTCTTTGAGGTGAACTACAATCTGCCCGTGGAATGTGAAAACGACTCGTCATTGAGTATCATACATGCGGATATCGAGCTCAAGCTGCGTCCGCAACAGCGCCGTAAGTCCCACAATCCCGCCCTTCAATGTCCGATTTGTGGCAAACAGCTGAGCACCAGTAATTCATTCAAATATCACATGCAACTGCACGGCGACAATCGACCCTTTGTCTGCAGCATTTGCGGCGAATCGTTTAAGACACGCAACGCCTATGATGGCCACATAACACTACACAATCCGAACAATCCCAACAAGTGTACATTCTGTGGAAAGATCTACAGGCAGGCCTCATCGTTGCGCTCGCACCTGTTCAGCCACAGCGGCGTCAAGCCCTTCACTTGCGACATCTGCGGCAAGGGATTGACCCAAAAGTCTGGCTACAAAAAACACATGCTCACCCATACGGGTGAGAAGCCGCATACCTGCGACACCTGCGGACGCAATTTCCGCTACTCAAGCAACCTGATCGCGCACAAGCGCTCCCACACACGAAAAAACCCCACCAATCCGAAGCCAGCGGGcaacaaaaagacaaaaagtCAAAAGGCGACCCAAACGTGA
- Protein Sequence
- MSTSEDKSSLEVAELQPCRVCNVPSTQSYSLYKPHIIAGELTTLGALLSYCANLQVLEEEQFLPTHICKRCVESLTQVYDFKRTALRTDHVLRKRNARLSRATISRSPSPANLVDVEAEPVSEPEAEANAAMEAASADEYVYVLEEPQSPVNSVASHQPDDDHEPAPDEMLESEVHFEVSDPTVEFFEVNYNLPVECENDSSLSIIHADIELKLRPQQRRKSHNPALQCPICGKQLSTSNSFKYHMQLHGDNRPFVCSICGESFKTRNAYDGHITLHNPNNPNKCTFCGKIYRQASSLRSHLFSHSGVKPFTCDICGKGLTQKSGYKKHMLTHTGEKPHTCDTCGRNFRYSSNLIAHKRSHTRKNPTNPKPAGNKKTKSQKATQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00540605;
- 90% Identity
- iTF_00479688; iTF_00549759;
- 80% Identity
- iTF_00479688;