Dari007174.1
Basic Information
- Insect
- Drosophila arizonae
- Gene Symbol
- br
- Assembly
- GCA_001654025.1
- Location
- NW:7318973-7379865[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-11 4.8e-08 32.0 0.0 1 40 695 735 695 738 0.90 2 4 4.6e-14 7.9e-11 40.9 0.1 2 39 750 787 749 790 0.94 3 4 1.1e-17 1.9e-14 52.5 0.0 1 45 804 849 804 849 0.98 4 4 1.1e-19 1.9e-16 58.9 0.0 1 43 856 899 856 900 0.97
Sequence Information
- Coding Sequence
- atGGCCGCCGTGCGGGGACATCAGTACTTTAGTCTGCGTTGGAATAACTATCAGAACACGATGACGTCAGTGTTTCAGCAGCTGCGCGAGGATCTCTCCTTCGTCGATGTGACCTTGTCCTGTGAGCATGGCTCGCTTAAGGCCCACAAGGTCGTCTTATCCGCCTGCTCAACGTATTTCCAAAAGCTGCTGCTCGAGAATCCGTGCAAGCATCCAACGATTATATTACCCGCCGACATCATATTCACAGACCTAAAGACAATTATCGATTTTGTTTATCGCGGCGAAATCGATGTTACCGAATCGGACTTACAGGGTCTGTTGCGCACCGCGgagcaattgaaaatcaaaggACTGTGCGAGCCGGCCGAGAATGCGGACGATTTGAATGACGCTGCATCGGCGATAATCACTGTATCGGAGAACATACAGCAGGCGGTCGTTGGCAATATTGTGAATGCGAGTCTAGTGTCTGGTGCTCCGTCGCCCACActcgagcagcaacagcaacatcatcagcaacagcagcagcagcaacagcagcagcagcagcaacagcagcaggagcaccagcagcagcaattggtgAATAGTGCGCTGCTGGCCCAGCATACGCTTGCCACCAGCAGTGGCATACAGTTGGCGGCAGGGCAACAGCTGTTGAGCAATACAgccggcggcggcaacagcagcagcagcaacagcactagcctgcaacagttgcagcagcagcagcagcaacagcaacagttgcagccaaCGCCGCGTAAATCGCGACTGCGTAAACGCTCCAAATCGCCAGATTTACAGCTACAAACacaatcgcagcagcaacagcaacaacagcagcagcagcagcaacaacaacaacatcatcatcatccacaAACGATACTCATCCAGGGACAGAATCAAACATCGATCGTGAGTCTGCAGCAAACGGCCGACGGCAATTATATACCAGTTGCAACAACTGGCGACGACTCCGATTGCGATAATAAGCCGCAAAAGATTTGCAAGACAGAGCAGTCGGTGGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCAGCGGGCGTGAGCGGCCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTTCTGGACTTCACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGACACACGCGATCTATCAAATCCCACCGAACAGCTCGACATAGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCACCATCATGCCACCGGGGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAGAGCGAGGTAATCGAGGCCAAGCATCTGGCTcatgtgcaacagcagcagcagcaacagcagcagcaacaacagcagcagcagcaacaacaacaacagcagcaacagcaacagcagcaacatgcagcacatcatcatcagcatttgCACGCTCAGCAATTGTTGGCGCAaagtcagcagcaacagcaacaacaacagcagcagcagcaacagcagcagcagcagcaacaacagcaacaccaacagcagcagcaggcggcggtGCATGCAGCACAGCATGCAGCGCATGCCACGCATGCGGATATTGGTGGTGCCACCGTCATGGAGATTGATCCGAGCCAGATCAAGCACGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACCGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGCGTATGCGGCCCCGGCGCCGGTGGTgttggcggtggtggtggtggtggtggtggcggcattggtggtggtggtgttaaTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGACCCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGTGGCACCAAATCGTGGAACGAGGATGCCCTACAGAATGCCTTGGAGGCATTGCGTTCGGGTCAAATATCGGCTAATAAAGCATCCAAAGCGTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATTCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGCGCTGGCAATACGTCTGTACAGAAAGCAAGTGCCGAATTCGGTATACCGACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCTATGAACGAGGCATTGAACTCGGTGCGCGTCGGTCAGATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGTGGCAAATACGATGTGGTGGCCAATACAAGTGGCATCTCGATTAACAACACGTCCGGCAATACGACCGGCAGCATTGAGATTATCGAACATAGTCAGGAGAATTCGTTGCATATGTTGCAGCATCAGTTCCCGTACAGTCCGTCGCCGCATGCGCAGACGCCGCAGCATCACGGAACGCCGCAGCATCATGGCACGCCGCTGCATCACAGTACGCCGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGGGCATGCAGCAGCATGTGGTGCACATGCAACAGTCGCCACATCAGgcgcatcatcagcaacagcagcagcagcagcacatgcaACAGGATGTCGTCACATCGAGCAGCCAGGTGGtgcacagccaacagcagcaacagcagcagcagcagcagcaacaacagcagcagcagcagcagcagttgcagcagatCTATCAGCATCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESDLQGLLRTAEQLKIKGLCEPAENADDLNDAASAIITVSENIQQAVVGNIVNASLVSGAPSPTLEQQQQHHQQQQQQQQQQQQQQQQEHQQQQLVNSALLAQHTLATSSGIQLAAGQQLLSNTAGGGNSSSSNSTSLQQLQQQQQQQQQLQPTPRKSRLRKRSKSPDLQLQTQSQQQQQQQQQQQQQQQHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVATTGDDSDCDNKPQKICKTEQSVASPASNSSTSNNAAGVSGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEQLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQQQQQQQQQQQQQQQQQQQQQQQQQQQHAAHHHQHLHAQQLLAQSQQQQQQQQQQQQQQQQQQQQQHQQQQQAAVHAAQHAAHATHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGGGGGGIGGGGVNAGEKGQFNGPKAWTQDDMNSALDALKTQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGISINNTSGNTTGSIEIIEHSQENSLHMLQHQFPYSPSPHAQTPQHHGTPQHHGTPLHHSTPHHSSQQGPPTPQGMQQHVVHMQQSPHQAHHQQQQQQQHMQQDVVTSSSQVVHSQQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512640;
- 90% Identity
- iTF_00479563;
- 80% Identity
- iTF_00479563;