Dari006648.1
Basic Information
- Insect
- Drosophila arizonae
- Gene Symbol
- retn
- Assembly
- GCA_001654025.1
- Location
- NW:12041250-12072544[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-26 6.5e-23 80.4 0.0 2 89 329 414 328 414 0.96 2 2 0.65 1.1e+03 -0.5 0.5 9 47 571 612 546 624 0.65
Sequence Information
- Coding Sequence
- ATGCAACTCCGAGTGCATCCGACTATGGATTGCAGCGGCCGTTCAAATAACACTATTGAACGCGATTCCGATTTGGGTGACGATTTGTCCCACGGCGATCGAACGGATGACGAGATGCGCGACTGCGACTCCGTAGACGGTGAACATCATCAGCTGAGCGCCAAGGCGGCAATCGCAGCTCGACTCAGTCACACAGTCGCCGGCGGCGCTGGCCTCAACTTTGCCAGTCCAGAGCAGCAAACAGATCTGCCACTCAGccatcatcatcaactgCCGCCGAATCATCCGCTCAACGCTCTGGGCAGCTTCATGGGCATCGGCGGACTACACAGCATTCCAAATCTCCAGCACAGCGACGTGCTCGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTGGGCCTCATGGAACAGGACTATGCGGCGGCAGCGCATGCAGCTGCGTTCGGGGCCAATATGCTGCCCACGACGATCAGCTCGGCCTTTCCGCTGGCCCACAATTCGGTGGCAGCCGCCGCGGCAGCTGCATCCTTTGGCCATGCGGCCAATGCGGCGGCCGGCAATGGCGCCAGCTACAATGGGGGCGCYgctgctgctgcaagtggagcaggaggagctgtggcagctggcaacaatAATGCAGGTGGCCCAGGTGGAGGCAAcagcggtggcggtggcggtggcggcacGACCaatgcaactggcaacaatagcaataacaacaatagcaacagtaacagcaacaacaacaacagcagcagcaacaataacaacaacaacaacaacaacaacaacaatgccggCAATGGGCATCCCTTTTCGTTTGCATCGCCGACAGCGCCAAGCGCCAAAGAAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTCGAtgatttgttttcgtttatgCAAAAGCGCGGCACACCCATCAATCGGCTGCCAATCATGGCCAAATCGGTGCTGGATCTGTATGAACTATATAATCTGGTGATAGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATCATCAAGGGGCTGCATCTGCCATCGAGCATCACCAGTGCCGCATTCACGCTGCGCACACAATACATGAAGTATTTGTACCCGTACGAGTGCGAGAAGAAGAACCTCAGCACACCGGCCGAGCTGCAGGCGGCCATCGATGGCAATCGGCGCGAAGGACGTCGCTCCAGTTACGGCCAATACGAGGCGATGCACAATCAGATGCCGCTGACACCCATTTCGCGAGCTCCACTGCCCGGTGGCATGCAACAAATGTCGCCCTTGGCTCTGGTCACACACGCCGCGGCGGCCAACAATCAGCAGgcgcaggcagcggcagcagccgccgcagcgcACCGCCGACTGATGGGCGGGCCGGCGTTTGGCCAGATGCCGAATCTGATGACGCAGGAGATCGAGAATCGCATGATGGAGTATCTGCAGCTCATACAGGCCAAGAAGGAGCAAAACGCTAACCCTGTGCTGGCTGCCACACACAatcaccaacagcagcagcagcagcaccaacagcagcagcaacagcaacagcagcaacaacaccagcagcagcaacagtcgctgcatcatcaccagcagcagcgacagcgctcCCAGAGTCCGGAGCTGAGCACGCGCGATGCGCTGAGTGCACAGGTGGCGCTGTGGCACATGTATCACAATAGCAGTCCAAACGGTTCGGCGCACACGTCGCCACAGCAGCGCGAAGCCCTGAACCTATCCGATTCGCCGCCAACTCTGAATCTGAATCACATTAAACGAGAACGCGAACGCGATCCGACGCCAGAGCCGGCGGATCAGGATGATGCACCACACCAGCCGCCGCCAGCGAAACGTGTGGGCAGCGGCCTGATGCCGCCCGGTTTTCCCGCTAACTTCTATTTGAATCCACACAACATGGCCGCTGTGGCAGCCGCCGCCGGCTTCCATCACCAggcgaacagcaacagccaccatcatctgcatcagcagcaacagcagcagctgctccagcagcagcagcaacaggacgCCGCGTCCGATGGCGAGCCAGAGGATGACTACGGCAATGCTGAGCACAATACCACCGGCAATTCCTCGTCCATGCACGACGACAGCGAGCCCCAGCCGCTGAACGGTCATCATGAGCTCGACCatcaccaccatcatcatcaccatcatcatcagaatCATCTAGACAAGTCGGATGACTCGGCCATTGAGAACTCACCCAGCACTTCCACCACGGCATCAGCTTCGGGCGGCCATCGTCACAGTTCGCCGGTCTCCACCAAGAAGAAGAGCGCCACCGGCAAGGCACAGTCCAGTTCCAAGGACAGCTGCACAGCTGTGggcggcagcagtggcagcagcggcgcaggCAGCGGCGTGGGTGAAGCCGGAGGCGGCAGTGGAGGCGGCCTCAAGCTAAATCCCCTCGAGACACTCAGCCTGCTGTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCGGCGCAAATGGCGAGCAGCAGTTGATTGTCAATCTGGAGCTGAATGGCATTAAGTACTCGGGCATGCTGGTGGCCAATCCAGGCGGACGCGAGCGtcacaacggcaacggcaacgacgacgacgacggcgatggCAACGGCGATGAcgacaacggcgacggcgacgactcCGACCCCGAGCCAGACAACGCTGCAGTTGCGACGCCCGCTGCAGTCGCGGAAGGCGGCGGCGCCAGCGAGGAGCCAGCGCCGGAGGAGGCCAACGAGAGTGGCGGCCAGGAGGTTGGCCAGAGCGAGGCAAacgtggaggaggaggaggaggcgcagCCGGCTGAAGACATTGTCAATGGGGGCGTGGGCGTAGGTTTAGGTGTCGGCATGGGtgtgggcatgggcgtgggcgtggctgtggggTCGCTGTTAAAAGATGCTGTTGCCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNNTIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPLAHNSVAAAAAAASFGHAANAAAGNGASYNGGAAAAASGAGGAVAAGNNNAGGPGGGNSGGGGGGGTTNATGNNSNNNNSNSNSNNNNSSSNNNNNNNNNNNNAGNGHPFSFASPTAPSAKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRAPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLMTQEIENRMMEYLQLIQAKKEQNANPVLAATHNHQQQQQQHQQQQQQQQQQQHQQQQQSLHHHQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPNGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPADQDDAPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANSNSHHHLHQQQQQQLLQQQQQQDAASDGEPEDDYGNAEHNTTGNSSSMHDDSEPQPLNGHHELDHHHHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKSATGKAQSSSKDSCTAVGGSSGSSGAGSGVGEAGGGSGGGLKLNPLETLSLLSGMQFQVARNGTGANGEQQLIVNLELNGIKYSGMLVANPGGRERHNGNGNDDDDGDGNGDDDNGDGDDSDPEPDNAAVATPAAVAEGGGASEEPAPEEANESGGQEVGQSEANVEEEEEAQPAEDIVNGGVGVGLGVGMGVGMGVGVAVGSLLKDAVASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502302;
- 90% Identity
- iTF_00554177;
- 80% Identity
- -