Basic Information

Insect: Drosophila arawakana
Gene Symbol: -
Assembly: GCA_018151165.1
Location: JAECWX010000260.1:1253213-1256932[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 8.2 4.7e+02 1.4 0.0 1 23 356 381 356 381 0.90

2 17 0.32 19 5.8 3.5 3 19 393 409 392 411 0.93

3 17 5.9 3.4e+02 1.9 3.0 2 17 424 439 423 450 0.75

4 17 0.34 20 5.8 1.6 3 19 483 499 481 503 0.87

5 17 0.0063 0.36 11.2 0.4 1 23 511 534 511 534 0.97

6 17 0.00062 0.036 14.4 0.3 2 23 539 560 538 560 0.97

7 17 6.7 3.9e+02 1.7 0.4 1 19 568 586 568 588 0.85

8 17 0.0023 0.13 12.6 2.3 1 22 608 629 608 632 0.90

9 17 0.073 4.2 7.9 0.7 3 21 639 657 639 658 0.90

10 17 0.015 0.86 10.0 0.6 1 23 677 702 677 702 0.96

11 17 0.04 2.3 8.7 1.6 2 23 717 739 716 739 0.93

12 17 0.022 1.2 9.5 0.9 2 23 745 767 744 767 0.93

13 17 0.025 1.4 9.3 0.2 2 23 771 793 770 793 0.96

14 17 0.0001 0.0058 16.9 1.0 1 23 799 821 799 821 0.98

15 17 0.0071 0.41 11.1 0.5 1 23 825 848 825 848 0.93

16 17 0.0002 0.011 15.9 0.6 1 23 854 877 854 877 0.96

17 17 0.0017 0.097 13.0 0.6 5 23 890 909 882 909 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	8.2	4.7e+02	1.4	0.0	1	23	356	381	356	381	0.90
2	17	0.32	19	5.8	3.5	3	19	393	409	392	411	0.93
3	17	5.9	3.4e+02	1.9	3.0	2	17	424	439	423	450	0.75
4	17	0.34	20	5.8	1.6	3	19	483	499	481	503	0.87
5	17	0.0063	0.36	11.2	0.4	1	23	511	534	511	534	0.97
6	17	0.00062	0.036	14.4	0.3	2	23	539	560	538	560	0.97
7	17	6.7	3.9e+02	1.7	0.4	1	19	568	586	568	588	0.85
8	17	0.0023	0.13	12.6	2.3	1	22	608	629	608	632	0.90
9	17	0.073	4.2	7.9	0.7	3	21	639	657	639	658	0.90
10	17	0.015	0.86	10.0	0.6	1	23	677	702	677	702	0.96
11	17	0.04	2.3	8.7	1.6	2	23	717	739	716	739	0.93
12	17	0.022	1.2	9.5	0.9	2	23	745	767	744	767	0.93
13	17	0.025	1.4	9.3	0.2	2	23	771	793	770	793	0.96
14	17	0.0001	0.0058	16.9	1.0	1	23	799	821	799	821	0.98
15	17	0.0071	0.41	11.1	0.5	1	23	825	848	825	848	0.93
16	17	0.0002	0.011	15.9	0.6	1	23	854	877	854	877	0.96
17	17	0.0017	0.097	13.0	0.6	5	23	890	909	882	909	0.92

Sequence Information

Coding Sequence: ATGTCGGAAAACGCAAAAACTAAAAACGATAGTGAGCGTAGCTGCCTGCATTGCAGAGTGCACAATTCAAAGCAGCAATTTCAAGAGATTTTCGATGAAGTGGGAATTGACATAGAATTACCCGATTTGCTGGCCAAATATTTTCACATCAATGTCAAACCCGATCCACAAAAACAGCAATTACTGTGTCAAGAGTGTGTGAAAACTTTAATTCGTTTCTTTGACATTGATGAACTGCAGCGGGAACAGGATGCGGCAAATGCCGCCAAAAAGCAGGCTAAACAGCCTGAGGCACCATCTACAGCTGCAAACGATGCCGCCAAGAAGGAAACAAAGGGCGTTAAAAAACAGATATCGCCAGCAAATAAAGCCAAAAGTGAACCCAAAAAGTTGCCCGTGGCTGTAAAATTAGCCGCCAAACCGAAGTCAGCCAAGGTGGTAGCCACGGAAGAGTCAGCCTCCATACGCGTTACCCGAGCCAAGACCTTAACTGTGACACCAAAGGCCAAGCCCAAACCAATTGAAAAGTCCAGTGGCAAAACGGTAGGCAGAAAAAGCAAAGAAGCCGGCGCAGGGGAGCAGGAGCAGATTAGCGAGCTGCTGCGTGACATACTGGACGATGAGAAGGCGGCCAGCGATGACAAGTTCGCAGAGGCGGCGGCCACAGTTCGGCAGCTGGAAACACAAGCGGTGCAGGAAAAGGAGCAACAAGAGCGGCAGCAGGAGGAAAATACCGATGAGCTGGAGTTTCTCCTTGAGCAAGAAGATGCCTCCTCGGACATGGACGTGCAGCACTTCAAGGTGGAGAACTATGCCTTAGTGGACTCCTCCCAATCACAAACCGAGGATGAATCTGTCAAGGTTGAGCCCTTTAACTTTGTGCTGATCAAGGAATCCGATGATATTGACGATCTCTATGAATACCTGTCCACGGTGGTGAGAACTTGCTTTGAGACGCTGACTTTTGAATGGTCCACCGTCTGTTGCCACTGCTCGCTAAAGTGTCAGCAGTTCGAGAGCCTGCTGGGACACATGCACAAGTGCCATCAGCTGCCCGAGGAGCGTTTTAAGTGTCCCATTGCGAACTGCAATGCGGAGTTGCAGGGCAGTAAATACCTGGCCATGCATTTGGTGGTGTTGCATGCAGCAGTGGCAGACATACCCATTTACGGCTGCTGTCCCGAGTGCAACATGACCTTCTCCAACATATTGCAGTACAATAAACACTCCTGCGCCCGTGTGATTAAGAAGCGTCGCGGCATACGCTTGTACTGCGAAATGTGCGGCTTGGAGTTTCCTTCCTGGAAGCGCTTTAACTTCCATAATCAGTTCCATTTGGAGCGGCACAGACCACGTGCTTGCTTTGTGTGCAACTATGCGGACACTAACATTGATGATCTCTTCCAGCATTTGCACTACTCACACGAGCCCGAGGGCACGCTCTTCTGCGACATCTGTGACCGCAACTTCCGCGATGCGACTGTCTTTGCGGAGCACAACAAATGCCACTCGAATGTCACCAGCACCACCTACACCTGCACCACCTGCAGCGCCAACTTTGATACCCGTGGACGTCTCAATGGACACATTCGTGCGCGACATGGTTCCATTATAAGCTGTGAGCTGTGCAGTCGCGAATTTGCTACCGAAGCCACCTACAACATACACATGAAGAAGCATCTGATCATTGAGCGCGAGATTCATTACTGCAGCAATTGTGGGCAACTGAGCGAGAATCACGACAAGATGTTGGCCCATGTGGAGGATGCCTCAACGGACTGTTTCAATGTGGAGATCTATGTGGAACTAATACGGGATGCTTACGTCTGTGAATATTGTTCGTGTTACTTTCGGCAGAAAACTGATTTGCGTGATCATCGTGATTCCGGAGTGCATAAGGACAATCTGTTCTGGTGTCAGCCGTGCGGCAAGGCATTTAATGACATGAAACTATATCGCCATCACTTACGCAACTATCAGCAACAACGCGCTGATGTGGAGCATCGCAAACTCGAGGTTTGCCTGTACTTTATGTGCGACTACGAGGATTGCTTTGAGGCGTACATCAATTGGAACTCATTGTACACGCACAAGCGACGCACGCACGATGGCCTTGAGAAGCAGGAAGGTGCCAAGCCCAACGAATGGATCTGTCAGTTCTGTCAGAAGGAATGCCGCTCCAAAATGTCGCTATCGGTGCATGTGGCACGCAGTCACAACAACAATAATGTTACTTGTACGATCTGCAAGTCTTCCTATAAAGACGATGAGGCACTTAAGAAGCATCATGCCTATTGGCATGAGCCTATGGAGTGTGCGCTGTGCCTGAAAGTGGTCAAGAGTCGTCGCAACTTTGACACACACATGAATGTGGTGCACTCAAACAATAAGCGTTATACCTGCAATGTCTGCGAAAAGGGTTTCTTCTACAAGAGCGAAATGGAGGCACACAAGCGACTACATACACAACTGTTTGAGTGCGATCAGTGCAGCTTTACGACGCGCAACAAGAAGTCGCTGGCGGTGCATGTGTTGGGACAACATTACAAGCGTTTTGCGTTTGAGTGCAAGACGTGCAACAAGCGTTTTGGTCGTCGTCAGGGCCTAATCAGTCATGTAGAGCGCATACATGGCTCAAATAATACGTGCCGTGATTTCTTTGAGAATGGTTGCAGCAAATCTTTTAGCACAACGGCCAAATTGAATGTGCATGTGCGCAAAGCACACAATGGCACCATCTTTCTAACTGATTTGGATGACGAAGAGCTGCAGGAAGATGAGCAGGAACTGGAACAACAGAAGGAGCAGGAAGAGGAACAAGCAGAGGACGAGCAGCCAGAGGATGAACAGCCAGAGGAGGAACAGCCAGAGGAGGAACAAGCAGAGGAGGAACAAGCAGAGGAGGAACAAGCGGAGGCAAAGTCACAGAAACCTAAAGCAAAGCGTCAGGCTTCTCCAGAAGCAACCACATCCAAGAAACGCTGTGTGCGTCGTAGCAATGAAACCCAAGAAGCGTTGATTCCGAGCGAACACGAGGAGGAGGAGGAGCCGGAGCACTGTGAAGACTCCAAGAAAACCAAAAACAAATCACCGCTTTCAAAAAGGAAGAAGAAAGTTAATTAA
Protein Sequence: MSENAKTKNDSERSCLHCRVHNSKQQFQEIFDEVGIDIELPDLLAKYFHINVKPDPQKQQLLCQECVKTLIRFFDIDELQREQDAANAAKKQAKQPEAPSTAANDAAKKETKGVKKQISPANKAKSEPKKLPVAVKLAAKPKSAKVVATEESASIRVTRAKTLTVTPKAKPKPIEKSSGKTVGRKSKEAGAGEQEQISELLRDILDDEKAASDDKFAEAAATVRQLETQAVQEKEQQERQQEENTDELEFLLEQEDASSDMDVQHFKVENYALVDSSQSQTEDESVKVEPFNFVLIKESDDIDDLYEYLSTVVRTCFETLTFEWSTVCCHCSLKCQQFESLLGHMHKCHQLPEERFKCPIANCNAELQGSKYLAMHLVVLHAAVADIPIYGCCPECNMTFSNILQYNKHSCARVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCNYADTNIDDLFQHLHYSHEPEGTLFCDICDRNFRDATVFAEHNKCHSNVTSTTYTCTTCSANFDTRGRLNGHIRARHGSIISCELCSREFATEATYNIHMKKHLIIEREIHYCSNCGQLSENHDKMLAHVEDASTDCFNVEIYVELIRDAYVCEYCSCYFRQKTDLRDHRDSGVHKDNLFWCQPCGKAFNDMKLYRHHLRNYQQQRADVEHRKLEVCLYFMCDYEDCFEAYINWNSLYTHKRRTHDGLEKQEGAKPNEWICQFCQKECRSKMSLSVHVARSHNNNNVTCTICKSSYKDDEALKKHHAYWHEPMECALCLKVVKSRRNFDTHMNVVHSNNKRYTCNVCEKGFFYKSEMEAHKRLHTQLFECDQCSFTTRNKKSLAVHVLGQHYKRFAFECKTCNKRFGRRQGLISHVERIHGSNNTCRDFFENGCSKSFSTTAKLNVHVRKAHNGTIFLTDLDDEELQEDEQELEQQKEQEEEQAEDEQPEDEQPEEEQPEEEQAEEEQAEEEQAEAKSQKPKAKRQASPEATTSKKRCVRRSNETQEALIPSEHEEEEEPEHCEDSKKTKNKSPLSKRKKKVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00471137;
90% Identity: iTF_00471137;
80% Identity: -