Basic Information

Insect: Drosophila arawakana
Gene Symbol: -
Assembly: GCA_018151165.1
Location: JAECWX010000261.1:1136847-1138978[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.8e-05 0.001 19.2 1.3 1 23 90 112 90 112 0.98

2 15 0.00025 0.014 15.6 2.9 1 23 118 140 118 140 0.95

3 15 0.0036 0.21 12.0 0.2 1 23 146 168 146 168 0.96

4 15 0.00021 0.012 15.9 0.1 2 23 192 213 191 213 0.97

5 15 3.6e-05 0.0021 18.3 0.1 2 23 237 258 236 258 0.97

6 15 0.0011 0.061 13.6 3.3 1 23 264 286 264 286 0.96

7 15 2.9e-05 0.0017 18.6 0.5 1 23 292 314 292 314 0.99

8 15 0.0018 0.1 12.9 1.0 1 20 418 437 418 438 0.93

9 15 6.6e-07 3.8e-05 23.7 1.0 1 23 452 474 452 474 0.98

10 15 7.1e-06 0.00041 20.5 3.7 1 23 480 502 480 502 0.99

11 15 3.6e-06 0.00021 21.4 1.6 1 23 508 530 508 530 0.98

12 15 2.9e-06 0.00017 21.7 2.3 1 23 540 562 540 562 0.98

13 15 0.00062 0.036 14.4 4.8 1 23 568 590 568 590 0.93

14 15 1.2e-05 0.00069 19.8 5.4 1 23 596 618 596 618 0.99

15 15 0.0092 0.53 10.7 0.2 2 23 625 646 624 646 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.8e-05	0.001	19.2	1.3	1	23	90	112	90	112	0.98
2	15	0.00025	0.014	15.6	2.9	1	23	118	140	118	140	0.95
3	15	0.0036	0.21	12.0	0.2	1	23	146	168	146	168	0.96
4	15	0.00021	0.012	15.9	0.1	2	23	192	213	191	213	0.97
5	15	3.6e-05	0.0021	18.3	0.1	2	23	237	258	236	258	0.97
6	15	0.0011	0.061	13.6	3.3	1	23	264	286	264	286	0.96
7	15	2.9e-05	0.0017	18.6	0.5	1	23	292	314	292	314	0.99
8	15	0.0018	0.1	12.9	1.0	1	20	418	437	418	438	0.93
9	15	6.6e-07	3.8e-05	23.7	1.0	1	23	452	474	452	474	0.98
10	15	7.1e-06	0.00041	20.5	3.7	1	23	480	502	480	502	0.99
11	15	3.6e-06	0.00021	21.4	1.6	1	23	508	530	508	530	0.98
12	15	2.9e-06	0.00017	21.7	2.3	1	23	540	562	540	562	0.98
13	15	0.00062	0.036	14.4	4.8	1	23	568	590	568	590	0.93
14	15	1.2e-05	0.00069	19.8	5.4	1	23	596	618	596	618	0.99
15	15	0.0092	0.53	10.7	0.2	2	23	625	646	624	646	0.96

Sequence Information

Coding Sequence: ATGAATGGAAACATAAACTTAAGTCGTGTTAAATTGGAGCCAGGGCTGGAGGAGGAGCAGCAGCAGACTTTCACGGCAAGCAATGTGGGCGTTTACAACAACTTTGCTTTAAAAACAGAAAACAATTTGGAGATTGATATAGGACCTGTTAAAATAGAGCCAGAACCGCCCACAGTTTGCAAGACTGCGCTGCCTGTGAGAAGAACACTAACGCGGTCCAAGAAACTACCTGCCACTACGGAAAAGTATAGCTTTCTACGGGTTCTGTTTCAATGTTCGCAGTGTCCGCGACACTTTGAGCGACAGGATGAGCTGCTCATACACACACAAATACACTCCAACAATTTGCTCTACAAGTGTCCTTATTGTCCAAACAGTTTCTCGCACAAATCCGTGTATACGACACACCTATTTGGTCACACGGGCAAGTTTCCTTATCCGTGTTCCGAATGCCCACAGGGATTCCTACAGAAGTTTGAGCTTAAGAAGCATGCACTTCTGCATGAGAAGCGGCGTCCACCCAAAAGCACCTTCTGTCCCCGCAAGTGCAAGCACAAGGCCAATCCTCCACTGCAGTGTCCACAGTGTCCTAGAAGCTTCCTGAACCGCGAAGAGCTGGAGATTCATCTGCAGATCCATAATGATAAGTGTGCAGCCAAGTGCCAAGTGTGTCCCAGTAACTGCAAGCATATTGGCGCTTATAAGCTGCAGTGTCCACAGTGTCCCCGTGTCTTCATGAAGAGCGAAGAACTGGAGATTCATCTGCAGATTCACAGCGATAAACTGCCGCACAGATGTCCCCACTGTCCCATCAGCTTTGCACACAAATCTGTTTACTTGACGCATCTTTTGGAGCACCCGGGCGAATTCAAGTACAAATGTAGCGAGTGCCCGCAGGGATTCATGAAGAAAGTGGAGCTTTCCAAACATATTCAGAGCCATCGGAGCAAGCAAGTCAGAAGTGTTCCAAGTATACAGCAGTCGGGGGCGAGGAGTAAGCCACAGGAAGAAGTTATTAAAAAGCGAAAGCCGGCGCTAAATGAGTCTCCTGATCAAAAACCTAAAACTAATGAGGATTCTACAGATAAGACTGTCAAAAGTAAAACGAAGAGTAACAAGACTGTGAATGGTGTAATGGAGGTGATACACATAAAGGAGGAAGTAGACAAGGATAGCAATCTTAAAATTAAACCAGGGGAGGAATCGGAGCAACTCCAGTTGAAGAAACCTTCAGCAACGTCTTCAAACTCCCACATGTGCAAGTTCTGCAACCGGGAATTTTCCAACTTGGGCGATTTGCGTTTGCATGAAAAATGCTACACACACACGGCTAAACAGTTGAGTAATAGACCGTATAAGTGCAATGACTGCACCATGAGTTTCACACAGGCCTATAATTTGGCGGTGCACACGCGACAACATACAGGCGAACGTCCCTACAAATGTCCACACTGTCTACGCACCTTTATACAGCATTCCGGACTCAAAGTGCACATAAGACAACATTCCGGCGAAAGGCCATACAAATGTGCCCATTGCCCGCGCACCTTTGCCAATCTCTCGAATCGTACGAAGCACATGATTGTTCATGATACGGAACTGGCTCGATATCATCCATATAAGTGCCCTCATTGTGCACGGACTTTTGCACAAAACTCACATTTCATAGCGCATGTGAGGGGACATACGGGCGAGCGTCCCTTTGCGTGCATCCATTGCTCGAAGCGGTTTAAAGTGAGTCACGAACTGAAACGACACCTGCGCATCCATACAGGAGAGCGTCCCTTTAAGTGTCCACATTGTGCAAAATCATTTGCTCAGACATCGCATTATCATGCACACATACGTGTACATTCCAGTGATCGGCCATTGAAGTGTCCCCAATGTCCGAGCACTTTTCTAAAGAGCTACGATCTCAATGTGCATCTCGGTACCCACACGGCGCACATTCGTTGCCATCAAGACATGAAATAA
Protein Sequence: MNGNINLSRVKLEPGLEEEQQQTFTASNVGVYNNFALKTENNLEIDIGPVKIEPEPPTVCKTALPVRRTLTRSKKLPATTEKYSFLRVLFQCSQCPRHFERQDELLIHTQIHSNNLLYKCPYCPNSFSHKSVYTTHLFGHTGKFPYPCSECPQGFLQKFELKKHALLHEKRRPPKSTFCPRKCKHKANPPLQCPQCPRSFLNREELEIHLQIHNDKCAAKCQVCPSNCKHIGAYKLQCPQCPRVFMKSEELEIHLQIHSDKLPHRCPHCPISFAHKSVYLTHLLEHPGEFKYKCSECPQGFMKKVELSKHIQSHRSKQVRSVPSIQQSGARSKPQEEVIKKRKPALNESPDQKPKTNEDSTDKTVKSKTKSNKTVNGVMEVIHIKEEVDKDSNLKIKPGEESEQLQLKKPSATSSNSHMCKFCNREFSNLGDLRLHEKCYTHTAKQLSNRPYKCNDCTMSFTQAYNLAVHTRQHTGERPYKCPHCLRTFIQHSGLKVHIRQHSGERPYKCAHCPRTFANLSNRTKHMIVHDTELARYHPYKCPHCARTFAQNSHFIAHVRGHTGERPFACIHCSKRFKVSHELKRHLRIHTGERPFKCPHCAKSFAQTSHYHAHIRVHSSDRPLKCPQCPSTFLKSYDLNVHLGTHTAHIRCHQDMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00471015;
90% Identity: -
80% Identity: -