Dacu016247.1
Basic Information
- Insect
- Drosophila acutilabella
- Gene Symbol
- -
- Assembly
- GCA_035046005.1
- Location
- JAWNOK010000068.1:4536478-4538719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.2e-05 0.0025 18.4 1.5 1 23 88 110 88 110 0.98 2 17 0.00026 0.02 15.5 2.9 1 23 116 138 116 138 0.95 3 17 0.002 0.16 12.7 1.7 1 23 144 166 144 166 0.99 4 17 7.6 5.9e+02 1.5 1.2 2 15 173 186 172 187 0.87 5 17 0.00054 0.042 14.5 0.1 2 23 190 211 189 211 0.97 6 17 4.5e-05 0.0035 17.9 0.0 2 23 235 256 234 256 0.97 7 17 0.00044 0.034 14.8 2.4 1 23 262 284 262 284 0.96 8 17 0.029 2.2 9.1 2.6 1 21 290 310 290 312 0.95 9 17 0.0011 0.083 13.6 0.6 1 20 438 457 438 458 0.93 10 17 0.0006 0.047 14.4 4.1 1 23 472 494 472 494 0.98 11 17 3.2e-08 2.5e-06 27.8 1.6 1 23 500 522 500 522 0.99 12 17 1.3e-05 0.001 19.6 1.5 1 23 528 550 528 550 0.98 13 17 3.1e-06 0.00024 21.6 2.3 1 23 560 582 560 582 0.98 14 17 0.0004 0.031 15.0 5.2 1 23 588 610 588 610 0.96 15 17 8.4e-07 6.5e-05 23.4 5.1 1 23 616 638 616 638 0.99 16 17 0.003 0.23 12.2 4.2 2 23 645 666 644 666 0.97 17 17 5.7e-05 0.0044 17.6 4.0 1 21 672 692 672 694 0.95
Sequence Information
- Coding Sequence
- ATGAATGGAAACATAGACTTAAGTCGTGTTAAATCGGAGCCAGagctggaggaggagcagcatGAGACTTTCACGGCAAGCAATGTGGGCGtttacaacaattttgtgCTTAAAACGGAAAACAATTTGGAGATTGATATAGGACCTGTTAAAATAGAACCAGAACCACCCACAGTTTGTAAGACTGCGCTGCCTGTAAGAAGAAAAGAAACTCGGACCAAGAAACTTCCTGCCACTACCGAAAAAGCTTCTACGGGTCCGTTTCAATGTTCGCAGTGTCCGCGGCACTTTGAGCGACGTGATGAGCtgctcatacacacacaaatacactccAACAATCTGCTCTACAAGTGTCCTTATTGTCCAAACAGTTTCTCGCACAAATCCGTCTATACGACGCACCTATTCGGACACACGGGCAAGTTTCCTTATCAGTGCCAGGAATGCCCGCAGGGATTCCTAAAGAAGTTTGAGCTTAACAAGCACTCACGTCGACATGAGAAGCGACGTCCAACCAAATGCACGTTGTGTCCCCGCAAGTGCATGCACAAGGGGAATATTCCACTGCAGTGTCCACAGTGTCCTAGGAGCTTTCTGAACCGCGAGGGGCTGGAGATTCATCTTCAGATCCATAATAGCAAGTGTGCAGTTAAGTGTCAAGTGTGTCCCAGTAAGTGCAAGCATATTGGCGATTATAAGCTACAGTGTCCACAGTGTCCTCGTGGCTTCATGAACAGTGAAGAACTGGAGATTCATCTACAGATTCACAGCGATAAACTGCCGCACAGATGTCCCCACTGTCCCATCAGCTTTGCACACAAATCCGTTTACTTGGCGCATCTTTTGGAGCACACAGGCGAGTTTAAGTTCAAATGCAGCGAGTGCTCGCAGGGATTTATGAAGAAAATGGATCTATCCCAACATATTCTGTGCCATTGGGGCAAGCGAGCCAGAAGTGTTCCAAGTATACAGCAATCGATAGCGAGGAGTATGCCGCAGGAAGAAGTTATCAAAGTGCGGAAGTCGGAGCCCAGTGTATCTcctaataaaaaacataaaactaatGAGGATTCAACAGATAAGActgtcaaaaataaaatgaatttaattccCATTAAATTGGAGCATGGGACTCAAAGTGTGGCTGAGTCTCAAGCGGATTCCGAGAGTAACAAGACTGTGAAAGGTGTTATGGATGTGACACTCATAAAGGACGAAGTAGACATAGATAgaaatcttaaaattaaaccaGGGGAGGAGTCGAAGCAACTCCAGTTGAAGAAACTTTTAGCAACGCCTTCTAACtccacacacatgtgcaagCTCTGCAACCGGGAGTTTCCCAACTTAAGCGATTTGCGTTTGCACGAAAAatgctacacacacacggcTAAACAGTCTAGTAATCGACCCTATAAGTGCAACTGCTGCACCATGAGTTTTACACAGGCCTATAATCTAGCGGTGCACAAGCGCAAACATACAGGTGAACGTCCCTACAAATGTCCACACTGTCCACGCACTTTTATACAGAACTCCGGACTCAAGGTGCACATGAGACAGCATTCTGGCGAAAGGCCATATAAGTGTGCCCATTGTCCACGCACCTTTGCCAATCTCTCGAATCGTACGAAGCACCTGATTGTTCATGATACGGAACTGGCCCGAGATCATCCATATAAGTGTCCACACTGTGCACGGACGTTTGCACAAAACTCGCATTTCATAGCGCACGTGAGGGGACATACGGGCGAGCGTCCCTTTGAGTGCATCCATTGCTCGAAACGGTTTAAAGTGAGTCACGAACTGAAGCGACACCTGCGCATCCATACAGGAGAGCGTCCCTATAAGTGTCCACACTGTCCAAAATCATTTGCTCAGACATCGCATTATCATGCACATATTCGCGTACATTCCGGTGACCGGCCTTTGAAGTGTCCCCACTGTCCGAGCACTTTTCTAAAGAGCTACAATCTCAAGGTGCATCTCTGTACGCACACAGGTGAACGTCCCTACAAATGCCCCCATTGCCCAAAAACATTTACTCAAAGCTCTGGGCGGCAAGCGCATGTTCGTTGTCATCAAGACagcaaataa
- Protein Sequence
- MNGNIDLSRVKSEPELEEEQHETFTASNVGVYNNFVLKTENNLEIDIGPVKIEPEPPTVCKTALPVRRKETRTKKLPATTEKASTGPFQCSQCPRHFERRDELLIHTQIHSNNLLYKCPYCPNSFSHKSVYTTHLFGHTGKFPYQCQECPQGFLKKFELNKHSRRHEKRRPTKCTLCPRKCMHKGNIPLQCPQCPRSFLNREGLEIHLQIHNSKCAVKCQVCPSKCKHIGDYKLQCPQCPRGFMNSEELEIHLQIHSDKLPHRCPHCPISFAHKSVYLAHLLEHTGEFKFKCSECSQGFMKKMDLSQHILCHWGKRARSVPSIQQSIARSMPQEEVIKVRKSEPSVSPNKKHKTNEDSTDKTVKNKMNLIPIKLEHGTQSVAESQADSESNKTVKGVMDVTLIKDEVDIDRNLKIKPGEESKQLQLKKLLATPSNSTHMCKLCNREFPNLSDLRLHEKCYTHTAKQSSNRPYKCNCCTMSFTQAYNLAVHKRKHTGERPYKCPHCPRTFIQNSGLKVHMRQHSGERPYKCAHCPRTFANLSNRTKHLIVHDTELARDHPYKCPHCARTFAQNSHFIAHVRGHTGERPFECIHCSKRFKVSHELKRHLRIHTGERPYKCPHCPKSFAQTSHYHAHIRVHSGDRPLKCPHCPSTFLKSYNLKVHLCTHTGERPYKCPHCPKTFTQSSGRQAHVRCHQDSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00478874;
- 90% Identity
- -
- 80% Identity
- -