Dara010925.1
Basic Information
- Insect
- Drosophila arawakana
- Gene Symbol
- -
- Assembly
- GCA_018151165.1
- Location
- JAECWX010000260.1:739570-757630[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-11 2.6e-08 33.3 0.0 1 40 421 461 421 464 0.90 2 4 7.1e-14 1.4e-10 40.5 0.1 2 39 476 513 475 516 0.94 3 4 1.7e-17 3.3e-14 52.1 0.0 1 45 530 575 530 575 0.98 4 4 1.7e-19 3.4e-16 58.5 0.0 1 43 582 625 582 626 0.97
Sequence Information
- Coding Sequence
- ATGGGCCTATTACGCACCGCTGAGCAATTGAAAATCAAAGGACTCTGCGAGCCAGCTGAGAACGCGGATGATTTGAATGACGCTGCATCGGCGACGATAACCGTTTCGGAGAACATACAGCAGGCGGTTGTTGGGAATATTCAAACAGCTGACGGCAATTATATACCTGTACCGGCAACAGCTGGCGACGACAACGACTCCGATAGCGATAATAAGCCCCAAAAGATTTGCAAAACAGAACAATCGGTGGCCTCACCCACATCCAACTCGTCCACATCGAATAATGCCGCTTCTGGCGTGAGCGGCCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAATAAAATGACTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGATTTCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATTTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCATTCAATAGCGCATCATCACACGACCGGAGACGAGAGCAACTCGAATCTGGTGCAGCATATCAAAAGTGAAGTGATTGAGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACTGTTATGGAGATTGATCCGAGCCAGATCAAACACGAGCCGGGCATGATCATAACGCCAGAGATTGTAAACATGATGTCCACTGGGCATATGGATATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCTAACGGTTCGCCGCACGATCAAAATGAGCCGCATTATACGAATTTGGATCAGCAACACGGCGGCTTGGGTGGCAGCGTTTGCGGCCCCGGCGCCGGTGGTGTTGGTGGTGGTGGCGGCATTGGTGGTGGTGGTAATGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACAACATTATGGCAGCGTGCACACCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGAACGAAATCATGGAATGAGGATGCATTACAGAATGCATTGGAGGCATTGCGATCGGGCCAAATATCGGCAAATAAAGCATCAAAAGCGTTTGGTATACCCTCATCGACGCTCTACAAGATAGCGCGTCGGGAGGGCATACGACTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGAGCTGGTAATACGTCGGTGCAAAAAGCAAGTGCTGAGTTTGGTATACCGACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGAATCGAATTATCGCGTTCAAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTAAACTCAGTGCGCGTTGGTCAAATGTCCATCAATCAGGCGGCCATACACTATAACCTGCCCTACAGTTCGCTCTACGGACGCTTTAAGCGGGGCAAATACGATGTGGTGGCAAATACCAGTGGTGTCTCGCTAATGAACACATCGGGCAACACGACCGGCAGCATTGAGATTATCGAACATAGTCAGGAGAACTCGGCTTCCATTGAGGTGCGAGACGCAGGCACTCGTACGCTGTCCATGCTGCAGAGCACCAATCCAAATTTCCGTTCCTTGGACTTGTCTCTGACACCAACAGTGTCCGTGTCCGCCTCTTCGGGTAGTGTGCCCAACGCTGCAAGTGTTGAGGGTTCATCTTTGTGTGGTTCTACTGTATCGGCTGGTTGCATTGGCAGTGCCCAGGACGAGGAGAGCTGCGATACCAAATTGCTGACTAGAACACGGGCGTACGCTTCCGTTAGCCAGCCGCAGAGTCCACGTCATAGGGGGCGTGGCACACCCAACGGTCTGACAGGACGTTCCACATCCATTTCTTCGCAGCTGGAGAAGACCAAGAAGCTGCTCAAGATGACAGAGGGTGAGGATAAACCCTTGACCATTCTGCACTACAACGATGTCTACAATATTGAGTCCATGGCCGAAACGGAACCAATTGGCGGTGCTGCACGCTTTGCCACCGCCATCAAAAGTTATGCACACTTGAATCCATTGGTGCTCTTCAGCGGTGATGCATTCTCGCCCAGCATGTTGAGCACCTTTACGCAAGGAGAACAGATGATACCGGTACTCAATCAGGTGGGCACGCACTGTGCTGTGTTTGGAAATCACGATTTTGATCACGGTCTGGATGTGCTCGTTAAGCTGATCAAACAAACTGAGTTTCCCTGGCTCATGTCGAATGTGGTTGACAACGAAACTGGCCGTCCGCTGGGCGGTGGCAAGATCTCTCACTTTATATTGCACAATCAAATCTCGATTGGTTTGATTGGTCTTGTGGAGAGGGAATGGCTCGAAACATTGCCCACCATCGATCCCACCGAAGTGACCTACATCGATTATGTGGAAGCTGGCAATCGACTGGCCCGTGAGCTACGCAACGAGGGCTGTGATCTGATCATAGCCCTTACCCACATGCGGACACCCAACGATATTAATCTGGCCGAGAAGTGTAATGGCATTGACATCATTTTGGGTGGTCACGATCATGTGCGTGAAGTGACCGAAATCAATGGCAAAATGATTGTAAAATCTGGCACTGATTTCCAACAATTCTCGGTCATAACCATCGAACGACAGCCCAATAATCGCACACAATTCACCACAGATGTGCGTTGTGTGGATGTCACGGCCAAAATTCCAGAGGATCCGGTATTGAAACAGGAATTATCCAAATATGCTGAGTTTATTGAGAGCAAACTATCGGATGTGATGGGCGTGTTTAGTGTGGAGCTGGATGGACGCTTCTCTCAAATACGCACCCAGGAGACAAATCTGGGTAATTGGGTGTGCGATGTGGTGCTGGCAGCAGTTGGCGCCGATGTGGTGATCCTTAACGGTGGCACTTTTCGCTCTGATCGCATACATCCCGTGGGCGCTTTCACAATGGGTGATTTGGTGAATGTCATACCCATGCGGGATCCCTTGATACTGCTGGAGGTCAAGGGCAGTGTGCTGTGGCAGGCACTAGAGAACGGCGTCTCAGCCTATCCAAAGCTCGAGGGTCGCTTTCCTCAAGTCTCGGGCATAAGTTTTGCCTTTGATCCGAAGGCAACGCCCGGTAAACGCATCGATCCGCAGCTCATACAGATTGGTGATGAGTATTTAAACCTCGAACAGACCTACAAGTTGTGCGTGAAGAGCTATATATTCATGGGCTGCGATGGTTACACCATGTTCAAGGACGCCAAAGTGCTGATGGATGACGATGCCTGTCCAGAGCTGGGCATTACGCTACAGAATCACTTCAAGGCTATCAATTCGCGTAAATGTGGACAGAATACCAAGCATCGTCAGTCGCTGGTGACACTCTCACGCCGTCATAGTCTAGTGCAGTGCTTGGATAATCTTGATCTGGATGGACCGTCGCCCATACGCAAACTGTCGGTGGGTCATCACAACAAGTCCATGGATCTGACGCATGGCAACTCTCAGAAGATGCTGCGTCGCGCTTCTTTGGATGACTTGGAGCAGTCCACCTGCGATTTGGCGCCACAGCTGCAGCATCGAATTGTTATGATACAGAACGAGGAGCACTATCATCAGTTGGTGCTCAAGAAGAAAACTCACATCACAAACTCAACCATCACCGAAGCGGAGGATGAGTAA
- Protein Sequence
- MGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGNIQTADGNYIPVPATAGDDNDSDSDNKPQKICKTEQSVASPTSNSSTSNNAASGVSGQAIVTQIVVARDGKDNKMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTTGDESNSNLVQHIKSEVIEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGIGGGGNAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSASIEVRDAGTRTLSMLQSTNPNFRSLDLSLTPTVSVSASSGSVPNAASVEGSSLCGSTVSAGCIGSAQDEESCDTKLLTRTRAYASVSQPQSPRHRGRGTPNGLTGRSTSISSQLEKTKKLLKMTEGEDKPLTILHYNDVYNIESMAETEPIGGAARFATAIKSYAHLNPLVLFSGDAFSPSMLSTFTQGEQMIPVLNQVGTHCAVFGNHDFDHGLDVLVKLIKQTEFPWLMSNVVDNETGRPLGGGKISHFILHNQISIGLIGLVEREWLETLPTIDPTEVTYIDYVEAGNRLARELRNEGCDLIIALTHMRTPNDINLAEKCNGIDIILGGHDHVREVTEINGKMIVKSGTDFQQFSVITIERQPNNRTQFTTDVRCVDVTAKIPEDPVLKQELSKYAEFIESKLSDVMGVFSVELDGRFSQIRTQETNLGNWVCDVVLAAVGADVVILNGGTFRSDRIHPVGAFTMGDLVNVIPMRDPLILLEVKGSVLWQALENGVSAYPKLEGRFPQVSGISFAFDPKATPGKRIDPQLIQIGDEYLNLEQTYKLCVKSYIFMGCDGYTMFKDAKVLMDDDACPELGITLQNHFKAINSRKCGQNTKHRQSLVTLSRRHSLVQCLDNLDLDGPSPIRKLSVGHHNKSMDLTHGNSQKMLRRASLDDLEQSTCDLAPQLQHRIVMIQNEEHYHQLVLKKKTHITNSTITEAEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00579206;
- 90% Identity
- -
- 80% Identity
- -