Dano002481.1
Basic Information
- Insect
- Drosophila anomelani
- Gene Symbol
- rfx7.L
- Assembly
- GCA_035045905.1
- Location
- JAWNOO010000007.1:19116140-19120258[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-33 1e-28 100.0 0.1 3 78 310 385 308 386 0.97
Sequence Information
- Coding Sequence
- ATGTCCGAGAAGCACGGCCAGCTGGGTGCGCAGTGGACGAAATCAGCGGCGCCAGCAGCACAAGCCTCCGCCACCATCCCCGTGCAAGTCCCTGTTCCACTTCCGAtcccagttccagttcccCTCCAAAAGGCCAACCCAAATCCCTACGTCAACTGCAATCTACAGCCAACGGATATCACCTATACCGCCGCCCGATTCCAGGCGCCCGTCATCCATGCCAAGGCATCGCCTCTGACGATTACGCCCGTGGGCAGTGGAGGAGCAGTGCCTGCTGGCTCCCAGATCTCACCCACGAGCCACACCCATGTACCTGTACCTGTAGCCACGCCCAGCGGCTTTGTGCCTCCTCCGTTTCCCAATGCCGGCGCTGGAGCCACTTCCGTGCTCACGCCGAATCCTTTTGTCGCGGCTGCCGGGAACGCTGCTGCCGGACTGGCCTTcgccaatgccttctccttcAACACAGCTCAGCAACTGGGCCTGGGAAAGATCATGCATGTCGTAGGAGGAACGTCACCAGCAGGATCAGTGCCAGCCACAACAGCACCGGCAGTCTCTGCAGCACCGCCCTCAGTACCAGCAATAGCGGGTCAACGGCATTCGAACGAAGCTGGACCAGCGGCCAGTGGTGTAATCAATTCCACCATTGCCGAGAACGTGATGAATGCCTTGACTAACTCCATGTCGGCGACGACGGGAGGAGCTCCGGTGCCCAGTGAGGAGAAAATGCGACGAGTGCAGCAAGTCATTGAGTCCAGTTTGGACGACACTGCCAAGCTGCAGATCTCGCAGATCCTGGAGCGGGTCTCCGTATTGAAGCCCATCGAGAAGCTATTCCTATACCTTCGTTTGCCCGGTGAATGCGCCGATACAGATCCGCTGAGGCAGCCACAGAATCCTTTGGGAACGCGCTCTGAGATTAATCATACCATAAATTGGGTGCGTTCCCACCTGGAGCACGATGCACAGGTGTCTATACCTAAGCAGGACGTGTACAACGATTACATAGCTTATTGCGAACGCCTAAGCATCAAACCCCTGTCGACAGCGGATTTTGGCAAGGTTATGAAGCAAGTTTTTCCGGGCGTGCGCCCTCGGAGATTAGGAACGCGAGGTAACTCCCGCTACTGCTATGCGGCTATGCGGAAGACCACAAAGCTGCCGCCTCCTCAGTTGCCGCAACTGAACAAAAGCGATAAAGGTCTCGGTGATGATCCCTCTGCTGATTCCAAGCTGTTGGCTGCTAGTCCCAATATGGTTGGATTACTGCCGACAGCAGGTGGAGGGGACTCTGAATGTTGGGAGGTGGTGCGAGGCTGGGCGGAGAAATTGCTAAATACCAAGCTGGAGAGTGTGGCAGATTTAAGTAGCCGCATCAGAAGCAACAATGCCACAGTTTCGACCAAGAAATATGCAGCTCGGGAACCCAAGGATAAGAGAGTTCTAACCGACATTGGACCTCTGAAGAAGAGACGCAAAAAGAAACGCAAAGGCTCAACATCCTCGGAATCCAGCTGCAATCAACTGGCCACTGGTCAGGATGCGGGCAGTAGCCAGGATGCCAGCGACGAACAGTTACTCAAGATCAAGCAGGAGATCATAGACTCGCCCATTCAtcaccatcagcagcaacagcaagcaCCCCTGGGCTACCTGCAGCAGGTGACGCCCATGAATTTGGCCACTGACCAGCGAAGCAGCAGCGCTGTGCGCAACCTAACGCCCAAGATCATGGAGATGGGCACGCCGTCCGTCGTGCTTTCGCAGCAAGACGAACCTTCGCCCACGGGACTAGTCATCAAAGACGAGGTGGAGGACTATACATCGAACATTTTCTGCAAGAAAGTGTTGAAGGCGCAGCAAACGAAAGGTTTCTGGGCCAATTCACCAAGCAGCGGGACAACAGGGGGCGGTGGCGGTCTGCTGGTGCCGCCAACGATCACCACTACCTCGGCGACGCCCCCTCCGCCGAATTCGGGTAATTCCCCTGTTCCCGGCCCCGGCCTTTCTATGGGTCCGCCCTCACAGATGATGATTGTCAATTCGGTGAGTCCATCGAGCAGCATGGATGCCACGCCCAAAGTGGCCTCTCGCAATCAGATGATGATTCTAAGAGCAAAGCGCTTAATGGCAGCAGAAAATGCCGCTCTGGCAGCGGCTGCCGAAGACTCTGGACTGCCCGAGAACTTGGGATTGCCCAGGGAGCGAGTGATCAGCATATGCAACATGGACAAGCATGAGCTGGATGACTATTTCCTGCCCGGCGAGGATGAGGAGAACTCCGAGGAGCCCGACAACGAGCTACTCCAATATTTTCAGATGGGAGACGCTGAGGAAAAACAACTAAATTCCTTGGATGCTGCAGAACCAAACAGGAATCCACTAGAGCCAACGTCGATGGGCTCTGCACCGGAGGCGATGCCCGCTCCCGGCCGCGGAGCAGCAGCCGTCgtcgccgcagcagcagcgatgtTAACGCCGGTCCCGGCGCCTTCAATGCTGCCCGGTCAGGCGGGAGTGGGTTCTGCCTCAGCGTCTCTGGCCTTAATGTCAAAAaagcatcaacagcagcaggagaagcagcagcatcacctgcagcagcaccaccagcagcgaCCAAGGCAGCTGCCCAGCattatcaacaacaacaagcgaAAGATCAGCCTGAGCAATGCATCCAGCAACGGTAGCAACAAGAACCATTTCCTACCTATATCACCGAATATAAATGGGTCCAACGGAACTGGAGCTAGTGCATCCACCCCGGCATCGGCACCAACATCGGCTAATTCCAGCCAGAATTGTTTTGCCAGTCCTGGCGTGACCCGGATGAAACAGCGATCAAGTTTGCTCAGCAAGCAACAGTCCCTGGACTGTGACAACCGGGATCCCATGATTGGAGCCCATCGCAAGGGACGTGGGTATGTGTACAGCTATCCCACTAGCACGTCGGCCTCCGCACCCCCGAGTCCGTCGCTTCTCCAGCAATGGATGGGCCCCAGTTGGTCGTTCAGTAGCGGCGGCAATTCGTGCAGTTTCACGGACAGCAGTCAGAGTGCCGATCCGCTGGTTAACCAGAACTCAATGGATCTGGAAACTAGTCTAGCGCTGACAGGCGCCAACGATCTAGATTCATCGGAGATGCAGCGTTCGCAGTCGGTGCCCTTGTCCCAACTGCAGCGGAGGTGCAGCCAGCAGTCGCCCAGCCTGAACTTCTATTCGGAAAACAGCAACAGCCAGCAGTCGGCGCCACTGAAGGATACAGGTTTGCTCTACGAAGACGTTGATGTTAGCTCCCTGATCTCGCCCAGTTTTAATCACAAGTTCAACAGCATGACACAGCAAACTGCAACCACGTGCAGCTCCTCGGCGGGTTCGTCGTCGGGCTACAGCAGTGGCGGATCTGCAGGAATTGTTTCGCGATCGGTGCCCTCCACTCCGCTGCCCCACCAGCAGCAAAACAGTCTAATATCGATGAATGGCAGTGGGTTGACAGCCAATGGAGCAGGTGTAGGTACAGGAGGATCAGGAAGTGGAAATGGAGCAGGTTGCGGAGTTGAGAATGGTTTCTTTAACATCTCACCGTCGTTTAACTGGGGCAAGGCCTCATCGGGCAATGGAAACCATTTGGCTTACGCTCACTCTTACGGTGCCCGGAATCCGCTAGATATATCCAAGTCCATGCCCACAACGCCAATTGCTAATCAATGTTTCCGCTACAGTCCCTCTGAGATGCGCCGCGATTTCCTTATCAACGGCAACACCATAGACAGTTTACCCTCGTCGTCGGCCTATGGAACGGGTATGGCCACAGATCCAGGGCTGGCCCTGAGCACGGACACCCTAATCGATGACAGTGCACCCAGCAGCGCCGATGTGGTGGAGGCGATGATTGGTGTCGAAGACATACTCGATGACTTTTAG
- Protein Sequence
- MSEKHGQLGAQWTKSAAPAAQASATIPVQVPVPLPIPVPVPLQKANPNPYVNCNLQPTDITYTAARFQAPVIHAKASPLTITPVGSGGAVPAGSQISPTSHTHVPVPVATPSGFVPPPFPNAGAGATSVLTPNPFVAAAGNAAAGLAFANAFSFNTAQQLGLGKIMHVVGGTSPAGSVPATTAPAVSAAPPSVPAIAGQRHSNEAGPAASGVINSTIAENVMNALTNSMSATTGGAPVPSEEKMRRVQQVIESSLDDTAKLQISQILERVSVLKPIEKLFLYLRLPGECADTDPLRQPQNPLGTRSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSRYCYAAMRKTTKLPPPQLPQLNKSDKGLGDDPSADSKLLAASPNMVGLLPTAGGGDSECWEVVRGWAEKLLNTKLESVADLSSRIRSNNATVSTKKYAAREPKDKRVLTDIGPLKKRRKKKRKGSTSSESSCNQLATGQDAGSSQDASDEQLLKIKQEIIDSPIHHHQQQQQAPLGYLQQVTPMNLATDQRSSSAVRNLTPKIMEMGTPSVVLSQQDEPSPTGLVIKDEVEDYTSNIFCKKVLKAQQTKGFWANSPSSGTTGGGGGLLVPPTITTTSATPPPPNSGNSPVPGPGLSMGPPSQMMIVNSVSPSSSMDATPKVASRNQMMILRAKRLMAAENAALAAAAEDSGLPENLGLPRERVISICNMDKHELDDYFLPGEDEENSEEPDNELLQYFQMGDAEEKQLNSLDAAEPNRNPLEPTSMGSAPEAMPAPGRGAAAVVAAAAAMLTPVPAPSMLPGQAGVGSASASLALMSKKHQQQQEKQQHHLQQHHQQRPRQLPSIINNNKRKISLSNASSNGSNKNHFLPISPNINGSNGTGASASTPASAPTSANSSQNCFASPGVTRMKQRSSLLSKQQSLDCDNRDPMIGAHRKGRGYVYSYPTSTSASAPPSPSLLQQWMGPSWSFSSGGNSCSFTDSSQSADPLVNQNSMDLETSLALTGANDLDSSEMQRSQSVPLSQLQRRCSQQSPSLNFYSENSNSQQSAPLKDTGLLYEDVDVSSLISPSFNHKFNSMTQQTATTCSSSAGSSSGYSSGGSAGIVSRSVPSTPLPHQQQNSLISMNGSGLTANGAGVGTGGSGSGNGAGCGVENGFFNISPSFNWGKASSGNGNHLAYAHSYGARNPLDISKSMPTTPIANQCFRYSPSEMRRDFLINGNTIDSLPSSSAYGTGMATDPGLALSTDTLIDDSAPSSADVVEAMIGVEDILDDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00482725;
- 90% Identity
- iTF_00489121; iTF_00532849; iTF_00484867; iTF_00525635; iTF_00488457; iTF_00527052; iTF_00612556; iTF_00561488; iTF_00594288; iTF_00491257; iTF_00593595;
- 80% Identity
- -