Basic Information

Gene Symbol
Trerf1
Assembly
GCA_035045945.1
Location
JAWNON010000140.1:4063356-4073289[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-10 2e-07 31.1 0.1 2 45 1760 1803 1759 1804 0.94

Sequence Information

Coding Sequence
ATGTGCAACGCATCTGTGGGCAGCGAGGGTTCCGTAACACTGCAACTAAGAGATGCGAGTGCTTTGGAGGCAGCCGCCAGCAGCACaagtacagcaacaacaacaactgcagcaacagcagcaacatcgtcATCAGGCCAAGCCAGCCAAGCGAATGCGTCAGGACTAACGTCAGCATTAGAGAATGCGCTGACTATTGGCTATCCGGATCCGGACATGTTAGCAGATGTCTTGGGCACCATACAGACAGCCTCTCTTAAGAACAAACAAAGcagcaacaccaccaccaacaccaataccaacagcaatagcaacagcatcagcaacagcaaacgaaGCATTAATGgtagcagcagccgaagcaaCTGCACTACTGCTCCAACAATTTTGAACAATACGATTGGAGCAACGAGCTCTGGCGTTCGCCTGAACAGTCCCAATAGGATAACAATTACGCGACGCAGCGCTAGCAATAAGATTAGCGTACAAACTGTGAGCGCTTCAACAAACACAACCATTAGTAGCATTGGTGGCAGCAAGACCAACTACATTAAGAACTGTCTaatacgcagcagcagctgcagcaacacgGCCACCAATGTCACAACGCTGGCACAGATtatgagcaacagcagcaccagcagcgccGCCAGTTTACTCAGTCAgcacaacaataatagcaactgcagcaacagcagcaactttaGCAACGCCTCGTCTGTGGGTAGCAGCATTAGTATtaacagcaccaccagcagcagcaccaccagcagtcACAGTagcagccatagccatagcaacagcaacagcaacgacagcaacagcagcagcggtcaCAGCCTAAGTTTCAAGAGCAACGGCCGACATGTTGCTAGCAtagtaacaacagcagcatccacGAACACCACTGCAACTGGCATTGGCATAATCACTGTCGACCACGCTCCCCGAAAGAGCCGACCCAAGTTATCCTCACCCACGCGTCACGGCCCCCAACAGTGTCAGaTTTGTAGCAAGATCTTTGGGAATGCCTCGGCACTAGCCAAGCACAAACTGACGCACAGCGACGAACGGAAATATATTTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACGCATCGGAACAAGAAACCTTACGAATGTAAGGCGGAAGGCTGCGGAAAGTCCTATTGTGATGCCCGCTCTCTTCGCCGACATTCGGAAAATCACCATGGAGGCGTGGCCACTCCGAATAACAACTCGCTCTCGCCAACGACTAGCACCAACTGCGGCAGCGTGAGCAGtggcagtagtagcagcagcagcagtgtgggcgtggccaccAACTCGCTTAGCCTGTCGCCGGCTACGGCGAGTGGTGATGCCAGCTCACCAGACGGTGCCACCTGCATTCGCACCTACATTTCCACAGGCAGCACAGTGGTGGACGCAGCCACTGGCATTGCGCTATCCGACGAGCAGATCAAGGCCATGAATTTGCCCATTAAAACTGGCGTTACATTGTTGTCGCCCACCACATCGACATCGTCGAACGCATCGTCCACAGCATCCTCGGCATGCTCCACATCGGGCAGCAACAccagcggcaatggcaacggcaacggcaacggcaatggcaatgctaTTGTTACTAGCTCACCCACAATTACGCTTAGCGATGGCACCACGCTCGAGGGCGATGGATTGACGCGCGAGCAACTCGATCTCATAAGCAAGATCATGCAGCAGACAAAGCAGACCAGTGCACAGGTCACTGTCTCCTCTCCCACCAGCGTCAGCTCCTACAAAATCAATACAGAGACAACGCAAGTTTCGTCGCGACCGCGCACCTGGAACATGCAATTGcTTAATAATGCACAAAACGTGACAGTAACTGTGGAGGATGGCACAGAGTTGGCTGGCTCGACTTCAGTTTCACCCGATGAGGTCAAGGACGATGAGATGAGCCAGCAGTTGGTGGCCGCCATTAATCCCCATCTGCTCAACATTGTTAAGATCGACAAGCCGGTCGAGTGCAATCTATGTCATCGCAAATTCAAGAATATACCCGCCCTTAATGGGCACATGCGTCTGCATGGCGGATACTTCAAAAAGGATCCGGAAACTAAACGCAGTGAGAAGAAGGACTCGAACGGACCTCCTTTACAGACAGCCAGCATTGGAGTGCGCGCCCTCATCGAGGAGAAGATCATCAGCAAGCGGAAGGACATAAATAAGGGCGCCTTCGTGGTGCCTGCTCCACCGAGTACCACAGGCAACAGCGGAGGCGTAGGagcctgcagcagcaacagcaacacactgCGACGCTCGATAAGTGACCTGGAGAGTTTTCTCAATCCGaagtgcagcagcaccagcttGAGTCAGGCACTctccaccagcagcagcaccaccacagCGGTGCTGCCGGCAGCGACCACAATCAAGAGCAGCAATGGGCTAAGCATACAGCAGATTGGTCTGCCGCAAAGCATCGAAATCTTCAGCGGAGGTCACAGGCAGCCAAAAACCCTTAGTTTAGGCAGTGGTGCCAATACAATAACCATAACCACCAATAACGTGCCTACCACAACCACCATGAGCGCCCTAACGGCATTGAAGGGCGGCGGCACCATCAATGGCATCTCCAGCAATGTGGATCCCAAGGACTCGACATTAATTGAGCTGCTTAAGCGTGGCACGCGTATCGCCGTCGCCTCCAAGAAGACTCACTTGCAAACGCAGAGCAGCACAAATCTGTTGCTGAGCAATGTGACGGGCACGGAGCTCACAACCATTGGCAGCAGCGTCCAGACAGCTGGCCGACAGATAATAACCAACAACAATCGCACAGTCATCATACCCTCGGATGTGCATGTGGTGTCCACTAAAAGTAAGCTCATCTCGACACAAGCCATCGCagccaacgacaacagcaacatcaacagcagcagcaacaatgcaacaTGTTCGACAAGCAGCATCTCTTTGCCGGATGGCACTCCGCTCTCAGTGGCCATTGCGAATAGCCAAGAGAATTTGGGCGTTAGCGAGGCAAGTAGCATTACGGGCGCCGGCGGTGTTTACACTGTGACCTACACTAGCGATGCGGATGCATCGGACCTCTTCGACGACGCTGAGGTCTACAATGTCTCGGATACGGAAATGCTACTGCAAACGGTGGATACCATGGAATTACTcaatgatgatgaggatgtgGTGCACAAGAGCGAACATTCCGAGGACTTTTCGCTGCTCAGCGAGGCCGGCGAAACTGTGCATACGCAGCTGGTCAAGACGGAGCCGGGACTACCTAGCACAACTAACAGCATAAATAAGACGACGCCGTTGCCCACCTTCCAGCAATTCCATTCCAAAGAGATTATCATGCAGAACAGTTCGCAAATTCAAGCCATTGCCAACATGCGTAACGGCAGCAATCTGGGCGTGCTCGCCTCACCCTTACATTCGCCAATAGCCTATCCGACGCCGCCGTCCAGCCACGAGAATATGGCACAGTCCTCACCTTTCATAGAGGATGCTGCGGCTCAGTTTGTGGACTCCAGTCACACATTCTTTGGCGACAAGACAGACTTCTCGCACGTCTATTTTAAAACAGACGAGGGCGATTCCATGCAGCAACTCACTGAGAACGACAACGAGAAGATACTCAAACTGAAGACGGTGCTTGAGGAGAGCAGCTTCGATCCGTCTATCAAAGTGGAAGATCTGTTGAGTAGCACTGAAGACGATGCTGAGTGCGATTTGCGCGAGTTTGCTGAGACAAATCTCTCGTTCCTGGATGAGGATCAGGAGTTCCTGAATGACTCACGAAATGCCACCTCTCCGTTGTCCGAATCCTTTTTTACCAGTGGCATCGGTTCGGCCGAGGATGTCAAACAAGTGCTGCGTGAGGTGTTGCCCGAGGAAAATATACAATTGCAGttgagcagcgagcagcaggGCGAGAACATCATTGATCTTTACTATTTGCCCGGTCTTGGCCTGCAATCCCAAATGATGCCCAACTCCGACGACCCGCTGTTGTCGTCCTCGCCACGAGAATTCGGCCAACAGCGTCAAGTTCTGCATGCAACATCTGCGACTACGACTGCACAACCTATCGAACAGTTGCAGTCTACGACTGTGCTTTAcgaccaacagcagcagcaacagcaacaacaattgcaactgcaattgcaaatgcaaccccagcatcagcaacagtcacaggaacagcaacaagcgcaagaacagcaacagcagcagcagcaacatcagcagcaacagcagcagcaacagcagcagcaacagcaacagctagaagctcaacagcaacagctgcaattgcCTCAGCTACCTGCCATGCAAActgaacaacagcagcaacaaactgaTTTTGTGCTCACTAACTTTACGCCCGTAAACTGTCAACCTCAATATATGGATGCCAATCAGCAGCCGATGATGCTGCAGCCATTGAATAGCCTGCTGCAGCCAATACTttacggcaacagcagcactggGAATAATAAGCCCGCATTTAGCACGCTTCTCAACGGCAATACGGTTCAGGCAACAGCACTCGATGCGAGCCTGCTCTTTGCCTGCGATGACTCCAAAAATAACTGCAACAAACCAATGCTAGCCGCTTTACCCGCAGCAATTCCGACGCCCGTAGTTACTGCTGCACCAAGTGTTGCTAATCTGCAGCCGTTGTCCAATCAAACGAATTCCATACTAAAGCGTCGACTGCGATCCAATGGAGCGCAGGATGTGCACAAGTTTTCGAAATTCCATACACTTTCGCCGCATCGTTCGAAGCTGCGCAAGCCATCGCGAACCCACTACACCCCTGCCCCAATACTCAATCCGGATCGCAAGGGCACTGGGCTCTACTGCAATGTGCGCAAACAGCTTGGCCAGGGCATGTTCGACGTATTTGACGATGACTTTGGCGATCCTGTGGGCTTGGTGGACTTCTGCGACGAGTCGAAGGTGAATCTTGGCTCCACCTATCAAGCGCAGATCCCAGCATGCAAGGCGCAAGACGAATCTCTTAAGGAACCCATGTGCGCCGACCTCATGTGGGATCCAAGTGTCCAGTTGGACGATAAGATACTGATGCGTTATATAGATCTCAGCAAATCATCGGCCGTACCCATGGGCAGCCATTCCGAGGAGGTAGCCTTACAGACGCTACTCGACGCAAAGGGCAACTCGGCGGCAGCGGTGCTTACACTACTGCAGATGCAGTCTAGCGCATTCCAAATGAAGTGGACTGCCTACGAGCTGGAGCAATTTCTACGTGGCCTCGAAAAGCATGGCAAAGATTTTGGCAAAATCGCAAGCGAGCTTCATACAAAGACTTCAGGCGAATGCGTgcaaatgtattatttttggaaGAAACTCTGTGTGGACTACAAGGTATCGCACCTTAAAATGGAGCCAGTTCCTGCGAGCATCCCAACGGTGGAGCAGAAGCCCTACGTTTGCGAGATTGCCGACTGCTCGGCGAGCTTCAGTTCTAAGGCGGCGCTGCATGGTCATGTTCGCATACACGCTTATGGTAgaaatgccagcaacaataatagcaacaacagcaacaacaacagcaacaaccagcaTGCCACGGCAACTagtgccaacaacaaccataattccagcaacagcaacaacaacaacaacaccaatagCAACAACGCATGCACACCCCTGACTAGCAGCAGTCAACAGactagcaacagcaacaacaacaatgcaacaacaaccataacGCACACTAATGGCAATAACAACACCAccgcgaacaacaacaataatatgaacaacaacaacagcatcgcTGGCATTTCCACAAACCCAACGATGCTctcagtagcaacaacagcaatagcaacagctgccgctgcagccgcaacaacagctgttgcagcagtaGCCACATCAACAGCATCGACAGCAATGAAagacagtagcaacagcaacaattccAACATACCCAAGGACAGTGAATTTCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAGAGCCGCAGCGCACATATGAAAACGCATCGAGTACAAGAAGCGGAACAACTAGCCAATTCCAAACAGCAATCATCcacacttgttgttgctgtcgcagcaacagcttcagcagcagccgcagcagcagcaacatcctcagcagcagcaacagcaatggccaCAGCAATTTCCTAG
Protein Sequence
MCNASVGSEGSVTLQLRDASALEAAASSTSTATTTTAATAATSSSGQASQANASGLTSALENALTIGYPDPDMLADVLGTIQTASLKNKQSSNTTTNTNTNSNSNSISNSKRSINGSSSRSNCTTAPTILNNTIGATSSGVRLNSPNRITITRRSASNKISVQTVSASTNTTISSIGGSKTNYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAASLLSQHNNNSNCSNSSNFSNASSVGSSISINSTTSSSTTSSHSSSHSHSNSNSNDSNSSSGHSLSFKSNGRHVASIVTTAASTNTTATGIGIITVDHAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHSENHHGGVATPNNNSLSPTTSTNCGSVSSGSSSSSSSVGVATNSLSLSPATASGDASSPDGATCIRTYISTGSTVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSACSTSGSNTSGNGNGNGNGNGNAIVTSSPTITLSDGTTLEGDGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTETTQVSSRPRTWNMQLLNNAQNVTVTVEDGTELAGSTSVSPDEVKDDEMSQQLVAAINPHLLNIVKIDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKRSEKKDSNGPPLQTASIGVRALIEEKIISKRKDINKGAFVVPAPPSTTGNSGGVGACSSNSNTLRRSISDLESFLNPKCSSTSLSQALSTSSSTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGHRQPKTLSLGSGANTITITTNNVPTTTTMSALTALKGGGTINGISSNVDPKDSTLIELLKRGTRIAVASKKTHLQTQSSTNLLLSNVTGTELTTIGSSVQTAGRQIITNNNRTVIIPSDVHVVSTKSKLISTQAIAANDNSNINSSSNNATCSTSSISLPDGTPLSVAIANSQENLGVSEASSITGAGGVYTVTYTSDADASDLFDDAEVYNVSDTEMLLQTVDTMELLNDDEDVVHKSEHSEDFSLLSEAGETVHTQLVKTEPGLPSTTNSINKTTPLPTFQQFHSKEIIMQNSSQIQAIANMRNGSNLGVLASPLHSPIAYPTPPSSHENMAQSSPFIEDAAAQFVDSSHTFFGDKTDFSHVYFKTDEGDSMQQLTENDNEKILKLKTVLEESSFDPSIKVEDLLSSTEDDAECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPEENIQLQLSSEQQGENIIDLYYLPGLGLQSQMMPNSDDPLLSSSPREFGQQRQVLHATSATTTAQPIEQLQSTTVLYDQQQQQQQQQLQLQLQMQPQHQQQSQEQQQAQEQQQQQQQHQQQQQQQQQQQQQQLEAQQQQLQLPQLPAMQTEQQQQQTDFVLTNFTPVNCQPQYMDANQQPMMLQPLNSLLQPILYGNSSTGNNKPAFSTLLNGNTVQATALDASLLFACDDSKNNCNKPMLAALPAAIPTPVVTAAPSVANLQPLSNQTNSILKRRLRSNGAQDVHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGMFDVFDDDFGDPVGLVDFCDESKVNLGSTYQAQIPACKAQDESLKEPMCADLMWDPSVQLDDKILMRYIDLSKSSAVPMGSHSEEVALQTLLDAKGNSAAAVLTLLQMQSSAFQMKWTAYELEQFLRGLEKHGKDFGKIASELHTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVPASIPTVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASNNNSNNSNNNSNNQHATATSANNNHNSSNSNNNNNTNSNNACTPLTSSSQQTSNSNNNNATTTITHTNGNNNTTANNNNNMNNNNSIAGISTNPTMLSVATTAIATAAAAAATTAVAAVATSTASTAMKDSSNSNNSNIPKDSEFPCKVCGKVFNKVKSRSAHMKTHRVQEAEQLANSKQQSSTLVVAVAATASAAAAAAATSSAAATAMATAIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00573254;
90% Identity
iTF_00476856;
80% Identity
iTF_00476856;